GO241446

Overview
NameGO241446
Unique NameGO241446
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GO241446 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 251.136 bits (640), Expect = 4.056e-66
Identity = 123/161 (76.40%), Postives = 130/161 (80.75%), Query Frame = 2
Query:    8 WAMLGAAGIFHSGNC*QNLGXPPTLPSWYTGWGARVLHQTPPTLFIVEMIFIGWAEGXRWADIIKPGCVNTDPXFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGXGPIDNXIAXLADPGHAXVFAAFTPK 490
            WAMLGAAGIF        +G   T PSWYT  G +       TLFIVE++ IGWAEG RWADIIKPGCVNTDP FPNNKLTGTDVGYPGGLWFDPLGWGSGSP K+KELRTKEIKNGRLAMLAVMGAWFQHIYTG GPIDN  A LADPGHA +FAAF+PK
Sbjct:  113 WAMLGAAGIFIP-ELLTKIGILNT-PSWYTA-GEQEYFTDTTTLFIVELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATIFAAFSPK 270          
BLAST of GO241446 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 249.98 bits (637), Expect = 9.035e-66
Identity = 121/161 (75.16%), Postives = 130/161 (80.75%), Query Frame = 2
Query:    8 WAMLGAAGIFHSGNC*QNLGXPPTLPSWYTGWGARVLHQTPPTLFIVEMIFIGWAEGXRWADIIKPGCVNTDPXFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGXGPIDNXIAXLADPGHAXVFAAFTPK 490
            WAMLGAAGIF        +G   T PSWYT  G +       TLF++E++ IGWAEG RWADIIKPGCVNTDP FPNNKLTGTDVGYPGGLWFDPLGWGSGSP K+KELRTKEIKNGRLAMLAVMGAWFQHIYTG GPIDN  A LADPGHA +FAAF+PK
Sbjct:  113 WAMLGAAGIFIPEFL-TKIGVLNT-PSWYTA-GEQEYFTDTTTLFVIELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATIFAAFSPK 270          
BLAST of GO241446 vs. ExPASy Swiss-Prot
Match: CB24_PEA (Chlorophyll a-b binding protein P4, chloroplastic OS=Pisum sativum GN=lhcA-P4 PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.107e-22
Identity = 63/151 (41.72%), Postives = 80/151 (52.98%), Query Frame = 2
Query:    8 WAMLGAAGIFHSGNC*QNLGXPPTLPSWYTGWGARVLHQTPPTLFIVEMIFIGWAEGXRWADIIKPGCVNTDPXFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGXGPIDNXIAXLADPGH 460
            WAMLG AG+        ++G    +P WY   G      +  TLF++E I   + E  RW DI  PG VN DP F    L   +VGYPGG+ F+PL +         E + KEI NGRLAMLA +G   QH  TG GP DN +  ++DP H
Sbjct:  101 WAMLGVAGMLLP-EVFTSIGII-NVPKWYAA-GKEEYFASSSTLFVIEFILSHYVEIRRWQDIKNPGSVNQDPIFKQYSLPAGEVGYPGGI-FNPLNFA-----PTLEAKEKEIANGRLAMLAFLGFIIQHNVTGKGPFDNLLQHISDPWH 242          
BLAST of GO241446 vs. ExPASy Swiss-Prot
Match: CB24_ARATH (Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana GN=CAB4 PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.107e-22
Identity = 63/158 (39.87%), Postives = 82/158 (51.90%), Query Frame = 2
Query:    8 WAMLGAAGIFHSGNC*QNLGXPPTLPSWYTGWGARVLHQTPPTLFIVEMIFIGWAEGXRWADIIKPGCVNTDPXFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGXGPIDNXIAXLADPGHAXVFAAF 481
            WAMLG AG+         +G    +P WY   G      +  TLF++E I   + E  RW DI  PG VN DP F    L   +VGYPGG+ F+PL +        +E + KE+ NGRLAMLA +G   QH  TG GP +N +  L+DP H  +   F
Sbjct:  102 WAMLGVAGMLLP-EVFTKIGII-NVPEWYDA-GKEQYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPKGEVGYPGGI-FNPLNFA-----PTQEAKEKELANGRLAMLAFLGFVVQHNVTGKGPFENLLQHLSDPWHNTIVQTF 250          
BLAST of GO241446 vs. ExPASy Swiss-Prot
Match: CB13_SOLLC (Chlorophyll a-b binding protein 8, chloroplastic OS=Solanum lycopersicum GN=CAB8 PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.112e-18
Identity = 51/109 (46.79%), Postives = 67/109 (61.47%), Query Frame = 2
Query:  134 TLFIVEMIFIGWAEGXRWADIIKPGCVNTDPXFPNNKLTGT--DVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGXGPIDNXIAXLADP 454
            TLF++EM  +G+AE  R+ D  KPG +         K  G   D  YPGG  F+PLG+G    + +KEL+ KEIKNGRLAMLA++G + Q + TG GP  N +  LADP
Sbjct:  154 TLFVLEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGLGGSGDPAYPGGPLFNPLGFGKDE-KSMKELKLKEIKNGRLAMLAILGYFIQALVTGVGPYQNLLDHLADP 261          
BLAST of GO241446 vs. ExPASy Swiss-Prot
Match: CB23_PEA (Chlorophyll a-b binding protein 3, chloroplastic OS=Pisum sativum GN=lhca3 PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.666e-17
Identity = 48/109 (44.04%), Postives = 68/109 (62.39%), Query Frame = 2
Query:  134 TLFIVEMIFIGWAEGXRWADIIKPGCVNTDPXFPNNKLTGT--DVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGXGPIDNXIAXLADP 454
            TLF++EM  +G+AE  R+ D  KPG +         K  G   +  YPGG +F+PLG+G    + +KEL+ KE+KNGRLAMLA++G + Q + TG GP  N +  +ADP
Sbjct:  156 TLFVLEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGFGGSGNPAYPGGPFFNPLGFGKDE-KSLKELKLKEVKNGRLAMLAILGYFIQGLVTGVGPYQNLLDHVADP 263          
BLAST of GO241446 vs. ExPASy Swiss-Prot
Match: CB120_HORVU (Chlorophyll a-b binding protein 1B-20, chloroplastic (Fragment) OS=Hordeum vulgare GN=LHC Ib-20 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.617e-14
Identity = 60/159 (37.74%), Postives = 73/159 (45.91%), Query Frame = 2
Query:    8 WAMLGAAGIFHSGNC*QNLGXPPTL--------PSWYTGWGARVLHQTPPTLFIVEMIFIGWAEGXRWADIIKPGCVNTDPXFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGXGPIDNXIAXLADPGH 460
            WAMLG AG+            P  L        P W    G      +  T   V M    + E  RW DI  PG VN DP F +  L   + GYPG + F+PL +   +P + KE   KE+ NGRLAMLA +G   QH   G GP +N    LADP H
Sbjct:   81 WAMLGVAGML----------IPEVLTKAGLMNAPEWLRLPGKETYFASSSTALRVHMSST-YVEIRRWQDIKNPGSVNQDPIFKSYSLPPHECGYPGRV-FNPLNF---APLENKE---KELANGRLAMLAFLGFLVQHNVHGKGPFENLQQHLADPWH 221          
BLAST of GO241446 vs. ExPASy Swiss-Prot
Match: CB2_CHLMO (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas moewusii PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.050e-13
Identity = 65/177 (36.72%), Postives = 75/177 (42.37%), Query Frame = 2
Query:    8 WAMLGAAGIFHSGNC*QNLGXPPTLPSW--------------YTGWGARVLHQTPPTLFIVEMIFIGWAEGXRWADIIKPGCVNTDPXFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGXGPIDNXIAXLADPGHAXVFAA---FTP 487
            WA+LGA GI          G     P W              Y G  A +  Q       V+++ +G  EG R         VN  P        G D  YPG   FDPLG     P+   EL+ KEIKNGRLAM +  G + Q I TG GPI N    LADPG    FAA   FTP
Sbjct:   94 WALLGALGILTPELLSTYAGVKFGEPVWFKAGAQIFSEGGLDYLGSPALIHAQNIVATLAVQVVLMGLIEGYR---------VNGGPAGE-----GLDPLYPGES-FDPLGLAD-DPDTFAELKVKEIKNGRLAMFSCFGFFVQAIVTGKGPIQNLADHLADPGTNNAFAAATKFTP 254          
BLAST of GO241446 vs. ExPASy Swiss-Prot
Match: CB2_DUNTE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella tertiolecta PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.512e-12
Identity = 62/177 (35.03%), Postives = 78/177 (44.07%), Query Frame = 2
Query:    8 WAMLGAAGIFHSGNC*QNLGXPPTLPSW--------------YTGWGARVLHQTPPTLFIVEMIFIGWAEGXRWADIIKPGCVNTDPXFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGXGPIDNXIAXLADPGHAXVFAA---FTP 487
            WA+LGA GI       Q  G     P W              Y G  + +  Q+      V+++ +G AE  R A+    G            L   D  YPGG  FDPLG     P+   EL+ KEIKNGRLAM + +G + Q I TG GP+ N    LADP     FA+   FTP
Sbjct:   89 WALLGALGILTPELLSQYAGVQFGEPVWFKAGAQIFADGGLNYLGNESLIHAQSIIATLAVQVVLMGLAEAYR-ANGGSEGF-----------LDDLDTLYPGGP-FDPLGLAD-DPDTFAELKVKEIKNGRLAMFSCLGFFVQAIVTGKGPVQNLTDHLADPTVNKAFASATKFTP 251          
BLAST of GO241446 vs. ExPASy Swiss-Prot
Match: CB27_TOBAC (Chlorophyll a-b binding protein 7, chloroplastic OS=Nicotiana tabacum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.811e-12
Identity = 40/77 (51.95%), Postives = 48/77 (62.34%), Query Frame = 2
Query:  254 TDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGXGPIDNXIAXLADPGHAXVFAAFT 484
            TD  YPGG  FDPLG     PE   EL+ KEIKNGRLAM ++ G + Q I TG GP+DN +  LADP +   +A  T
Sbjct:  187 TDPLYPGGS-FDPLGLAD-DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLDNLVDHLADPVNNNAWAYAT 261          
The following BLAST results are available for this feature:
BLAST of GO241446 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
CB12_SOLLC4.056e-6676.40Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB12_PETHY9.035e-6675.16Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB24_PEA2.107e-2241.72Chlorophyll a-b binding protein P4, chloroplastic ... [more]
CB24_ARATH2.107e-2239.87Chlorophyll a-b binding protein 4, chloroplastic O... [more]
CB13_SOLLC4.112e-1846.79Chlorophyll a-b binding protein 8, chloroplastic O... [more]
CB23_PEA2.666e-1744.04Chlorophyll a-b binding protein 3, chloroplastic O... [more]
CB120_HORVU1.617e-1437.74Chlorophyll a-b binding protein 1B-20, chloroplast... [more]
CB2_CHLMO3.050e-1336.72Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2_DUNTE7.512e-1235.03Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB27_TOBAC9.811e-1251.95Chlorophyll a-b binding protein 7, chloroplastic O... [more]

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Properties
Property NameValue
Genbank description94 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 178 5, mRNA sequence.