GO241437

Overview
NameGO241437
Unique NameGO241437
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
GO241437_ssr446 microsatellite GO241437_ssr446:446..460. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1810 contig Csv1_Contig1810:3..623. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of GO241437 vs. ExPASy Swiss-Prot
Match: BR44L_BOVIN (Brain protein 44-like protein OS=Bos taurus GN=BRP44L PE=1 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.304e-22
Identity = 48/79 (60.76%), Postives = 58/79 (73.42%), Query Frame = 1
Query:  139 TTHFWGPVANWGFVVAGLVDLKKPPEMISGNMTTAMCIYSGLFMRFAWMVQPRNYLLLACHASNETVQLYHLSRWARSQ 375
            +THFWGPVANWG  +A + D+KK PE+ISG MT A+C YS  FMRFA+ VQPRN+LL ACHA+NE  QL    R  R +
Sbjct:   24 STHFWGPVANWGLPIAAINDMKKSPEIISGRMTFALCCYSLTFMRFAYKVQPRNWLLFACHATNEVAQLIQGGRLIRHE 102          
BLAST of GO241437 vs. ExPASy Swiss-Prot
Match: BR44L_HUMAN (Brain protein 44-like protein OS=Homo sapiens GN=BRP44L PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.906e-22
Identity = 46/69 (66.67%), Postives = 55/69 (79.71%), Query Frame = 1
Query:  139 TTHFWGPVANWGFVVAGLVDLKKPPEMISGNMTTAMCIYSGLFMRFAWMVQPRNYLLLACHASNETVQL 345
            +THFWGPVANWG  +A + D+KK PE+ISG MT A+C YS  FMRFA+ VQPRN+LL ACHA+NE  QL
Sbjct:   24 STHFWGPVANWGLPIAAINDMKKSPEIISGRMTFALCCYSLTFMRFAYKVQPRNWLLFACHATNEVAQL 92          
BLAST of GO241437 vs. ExPASy Swiss-Prot
Match: YNFD_CAEEL (UPF0041 protein R07E5.13 OS=Caenorhabditis elegans GN=R07E5.13 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 8.455e-22
Identity = 48/75 (64.00%), Postives = 57/75 (76.00%), Query Frame = 1
Query:  139 TTHFWGPVANWGFVVAGLVDLKKPPEMISGNMTTAMCIYSGLFMRFAWMVQPRNYLLLACHASNETVQLYHLSRW 363
            +THFWGPVANWG  +A L DLKK P+MISG MT+A+ IYS +FMRFAW VQPRN LL ACH +N + Q   L R+
Sbjct:   26 STHFWGPVANWGLPLAALGDLKKNPDMISGPMTSALLIYSSVFMRFAWHVQPRNLLLFACHFANFSAQGAQLGRF 100          
BLAST of GO241437 vs. ExPASy Swiss-Prot
Match: BR44L_RAT (Brain protein 44-like protein OS=Rattus norvegicus GN=Brp44l PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 8.455e-22
Identity = 45/69 (65.22%), Postives = 54/69 (78.26%), Query Frame = 1
Query:  139 TTHFWGPVANWGFVVAGLVDLKKPPEMISGNMTTAMCIYSGLFMRFAWMVQPRNYLLLACHASNETVQL 345
            +THFWGPVANWG  +A + D+KK PE+ISG MT A+C YS  FMRFA+ VQPRN+LL ACH +NE  QL
Sbjct:   24 STHFWGPVANWGLPIAAINDMKKSPEIISGRMTFALCCYSLTFMRFAYKVQPRNWLLFACHVTNEVAQL 92          
BLAST of GO241437 vs. ExPASy Swiss-Prot
Match: BR44L_MOUSE (Brain protein 44-like protein OS=Mus musculus GN=Brp44l PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 8.455e-22
Identity = 45/69 (65.22%), Postives = 54/69 (78.26%), Query Frame = 1
Query:  139 TTHFWGPVANWGFVVAGLVDLKKPPEMISGNMTTAMCIYSGLFMRFAWMVQPRNYLLLACHASNETVQL 345
            +THFWGPVANWG  +A + D+KK PE+ISG MT A+C YS  FMRFA+ VQPRN+LL ACH +NE  QL
Sbjct:   24 STHFWGPVANWGLPIAAINDMKKSPEIISGRMTFALCCYSLTFMRFAYKVQPRNWLLFACHVTNEVAQL 92          
BLAST of GO241437 vs. ExPASy Swiss-Prot
Match: YCYB_SCHPO (UPF0041 protein C1235.11 OS=Schizosaccharomyces pombe GN=SPCC1235.11 PE=2 SV=3)

HSP 1 Score: 102.449 bits (254), Expect = 1.884e-21
Identity = 43/68 (63.24%), Postives = 55/68 (80.88%), Query Frame = 1
Query:  139 TTHFWGPVANWGFVVAGLVDLKKPPEMISGNMTTAMCIYSGLFMRFAWMVQPRNYLLLACHASNETVQ 342
            +THFWGP++N+G  +A ++DLKK P +ISG MT A+ +YS +FMR+AWMV PRNYLLL CHA N TVQ
Sbjct:   34 STHFWGPLSNFGIPIAAILDLKKDPRLISGRMTGALILYSSVFMRYAWMVSPRNYLLLGCHAFNTTVQ 101          
BLAST of GO241437 vs. ExPASy Swiss-Prot
Match: FMP37_YEAST (UPF0041 protein FMP37 OS=Saccharomyces cerevisiae GN=FMP37 PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.302e-19
Identity = 43/87 (49.43%), Postives = 60/87 (68.97%), Query Frame = 1
Query:  139 TTHFWGPVANWGFVVAGLVDLKKPPEMISGNMTTAMCIYSGLFMRFAWMVQPRNYLLLACHASNETVQLYHLSRWARSQGYLSEKKK 399
            TTHFWGPV+N+G  +A + DLKK P +ISG MT A+  YSG+FM++A  V P+NYLL  CH  NET QL    R+ +   + ++++K
Sbjct:   28 TTHFWGPVSNFGIPIAAIYDLKKDPTLISGPMTFALVTYSGVFMKYALSVSPKNYLLFGCHLINETAQLAQGYRFLKYTYFTTDEEK 114          
BLAST of GO241437 vs. ExPASy Swiss-Prot
Match: BR44M_BOVIN (Brain protein 44-like protein 2 OS=Bos taurus PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.143e-18
Identity = 41/75 (54.67%), Postives = 52/75 (69.33%), Query Frame = 1
Query:  139 TTHFWGPVANWGFVVAGLVDLKKPPEMISGNMTTAMCIYSGLFMRFAWMVQPRNYLLLACHASNETVQLYHLSRW 363
            +THFWGPVANWG  +A   D++  P++ISG MTTA+  YS  FMRFA+ VQPRN LL+ACH +N   Q     R+
Sbjct:   26 STHFWGPVANWGLPLAAFRDMRASPDIISGRMTTALIFYSMAFMRFAYRVQPRNLLLMACHGTNIVAQSMQAGRY 100          
BLAST of GO241437 vs. ExPASy Swiss-Prot
Match: FMP43_YEAST (UPF0041 protein FMP43 OS=Saccharomyces cerevisiae GN=FMP43 PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.634e-15
Identity = 36/87 (41.38%), Postives = 54/87 (62.07%), Query Frame = 1
Query:  106 RAFWNSPVGPKTTHFWGPVANWGFVVAGLVDLKKPPEMISGNMTTAMCIYSGLFMRFAWMVQPRNYLLLACHASNETVQLYHLSRWA 366
            R FWNS  GPKT HFW P   WG V AGL D+K+P E +SG    ++   + ++ R++++++P+NYLL + +        YHL+R A
Sbjct:   11 RRFWNSETGPKTVHFWAPTLKWGLVFAGLNDIKRPVEKVSGAQNLSLLATALIWTRWSFVIKPKNYLLASVNFFLGCTAGYHLTRIA 97          
BLAST of GO241437 vs. ExPASy Swiss-Prot
Match: U041A_DICDI (UPF0041 protein A OS=Dictyostelium discoideum GN=DDB_G0267508 PE=3 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 1.107e-13
Identity = 37/97 (38.14%), Postives = 55/97 (56.70%), Query Frame = 1
Query:  115 WNSPVGPKTTHFWGPVANWGFVVAGLVDLKKPPEMISGNMTTAMCIYSGLFMRFAWMVQPRNYLLLACHASNETVQLYHLSRWARSQGYLSEKKKDE 405
            W   VG     F G  ANW   +A  ++LK  PE +   MTT + +YS +FMR+A  + P NY LL CH +NE  QL  L R+ + + + S+++ D+
Sbjct:    5 WTKMVG-----FLGAAANWTIPIASFMNLKNDPEKVDPIMTTTLAVYSAVFMRWAIAIYPPNYWLLGCHVANEVAQLTQLGRYGKWKVFDSKQESDK 96          
The following BLAST results are available for this feature:
BLAST of GO241437 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
BR44L_BOVIN1.304e-2260.76Brain protein 44-like protein OS=Bos taurus GN=BRP... [more]
BR44L_HUMAN2.906e-2266.67Brain protein 44-like protein OS=Homo sapiens GN=B... [more]
YNFD_CAEEL8.455e-2264.00UPF0041 protein R07E5.13 OS=Caenorhabditis elegans... [more]
BR44L_RAT8.455e-2265.22Brain protein 44-like protein OS=Rattus norvegicus... [more]
BR44L_MOUSE8.455e-2265.22Brain protein 44-like protein OS=Mus musculus GN=B... [more]
YCYB_SCHPO1.884e-2163.24UPF0041 protein C1235.11 OS=Schizosaccharomyces po... [more]
FMP37_YEAST2.302e-1949.43UPF0041 protein FMP37 OS=Saccharomyces cerevisiae ... [more]
BR44M_BOVIN1.143e-1854.67Brain protein 44-like protein 2 OS=Bos taurus PE=2... [more]
FMP43_YEAST2.634e-1541.38UPF0041 protein FMP43 OS=Saccharomyces cerevisiae ... [more]
U041A_DICDI1.107e-1338.14UPF0041 protein A OS=Dictyostelium discoideum GN=D... [more]

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Properties
Property NameValue
Genbank description85 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 169 5, mRNA sequence.