GO241397

Overview
NameGO241397
Unique NameGO241397
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9540 contig Csv1_Contig9540:532..1036. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of GO241397 vs. ExPASy Swiss-Prot
Match: CB22_HORVU (Chlorophyll a-b binding protein 2, chloroplastic OS=Hordeum vulgare GN=CAB2 PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 4.121e-53
Identity = 75/82 (91.46%), Postives = 76/82 (92.68%), Query Frame = 3
Query:  114 VTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVXGKGPLXNLADXLADPVNNNAWAYAXNFVPGK 359
            V DPLYPGGSFDPLGLADD EAFAELKVKEIKNGRLAMFSMFGFFVQAIV GKGPL NLAD LADPVNNNAWA+A NFVPGK
Sbjct:  183 VVDPLYPGGSFDPLGLADDAEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 264          

HSP 2 Score: 72.7886 bits (177), Expect = 4.121e-53
Identity = 33/44 (75.00%), Postives = 36/44 (81.82%), Query Frame = 2
Query:    2 GNPSLIHAQSXLAXWACQVVLMGXVEGYXIAGGPLGEXD*PIVP 133
            GNPSL+HAQS LA WACQVVLMG VEGY +AGGPLGE   P+ P
Sbjct:  146 GNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDPLYP 189          
BLAST of GO241397 vs. ExPASy Swiss-Prot
Match: CB21_SOYBN (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Glycine max PE=2 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 3.439e-52
Identity = 75/82 (91.46%), Postives = 77/82 (93.90%), Query Frame = 3
Query:  114 VTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVXGKGPLXNLADXLADPVNNNAWAYAXNFVPGK 359
            VTDP+YPGGSFDPL LADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIV GKGPL NLAD LA+PVNNNAWAYA NFVPGK
Sbjct:  164 VTDPIYPGGSFDPLALADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLAEPVNNNAWAYATNFVPGK 245          

HSP 2 Score: 67.781 bits (164), Expect = 3.439e-52
Identity = 33/44 (75.00%), Postives = 34/44 (77.27%), Query Frame = 2
Query:    2 GNPSLIHAQSXLAXWACQVVLMGXVEGYXIAGGPLGEXD*PIVP 133
            GN SLIHAQS LA WA QV+LMG VEGY IAGGPLGE   PI P
Sbjct:  127 GNQSLIHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDPIYP 170          
BLAST of GO241397 vs. ExPASy Swiss-Prot
Match: CB22_SOYBN (Chlorophyll a-b binding protein 2, chloroplastic OS=Glycine max GN=CAB2 PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 2.198e-51
Identity = 72/82 (87.80%), Postives = 74/82 (90.24%), Query Frame = 3
Query:  114 VTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVXGKGPLXNLADXLADPVNNNAWAYAXNFVPGK 359
            VTDP+YPGGSFDPLGLADDPEA AELKVKE+KNGRLAMFSMFGFFVQAIV GKGPL NLAD LADPVNNNAWAYA    PGK
Sbjct:  175 VTDPIYPGGSFDPLGLADDPEALAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATKLCPGK 256          

HSP 2 Score: 70.8626 bits (172), Expect = 2.198e-51
Identity = 34/44 (77.27%), Postives = 35/44 (79.55%), Query Frame = 2
Query:    2 GNPSLIHAQSXLAXWACQVVLMGXVEGYXIAGGPLGEXD*PIVP 133
            GNPSLIHAQS LA WA QV+LMG VEGY IAGGPLGE   PI P
Sbjct:  138 GNPSLIHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDPIYP 181          
BLAST of GO241397 vs. ExPASy Swiss-Prot
Match: CB23_APIGR (Chlorophyll a-b binding protein, chloroplastic OS=Apium graveolens GN=LHC0 PE=1 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 4.056e-50
Identity = 71/82 (86.59%), Postives = 75/82 (91.46%), Query Frame = 3
Query:  114 VTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVXGKGPLXNLADXLADPVNNNAWAYAXNFVPGK 359
            + DPLYPGGSFDPLGLA+DPE  AELKVKE+KNGRLAMFSMFGFFVQAIV GKGPL NLAD LADPVNNNAWA+A NFVPGK
Sbjct:  183 IVDPLYPGGSFDPLGLAEDPERSAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 264          

HSP 2 Score: 67.3958 bits (163), Expect = 4.056e-50
Identity = 30/44 (68.18%), Postives = 35/44 (79.55%), Query Frame = 2
Query:    2 GNPSLIHAQSXLAXWACQVVLMGXVEGYXIAGGPLGEXD*PIVP 133
            GNPSL+HAQS L+ WA QV+LMG VEGY +AGGPLGE   P+ P
Sbjct:  146 GNPSLVHAQSILSIWATQVILMGAVEGYRVAGGPLGEIVDPLYP 189          
BLAST of GO241397 vs. ExPASy Swiss-Prot
Match: CB22_PINSY (Chlorophyll a-b binding protein type 2 member 2 (Fragment) OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 4.448e-49
Identity = 70/80 (87.50%), Postives = 72/80 (90.00%), Query Frame = 3
Query:  120 DPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVXGKGPLXNLADXLADPVNNNAWAYAXNFVPGK 359
            DPLYPG +FDPLGLADDPEA AELKVKEIKNGRLAMFSMFGFFVQAIV GKGP+ NL D LADPV NNAWAYA NFVPGK
Sbjct:   71 DPLYPGDAFDPLGLADDPEAKAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHLADPVANNAWAYATNFVPGK 150          

HSP 2 Score: 69.707 bits (169), Expect = 4.448e-49
Identity = 31/44 (70.45%), Postives = 35/44 (79.55%), Query Frame = 2
Query:    2 GNPSLIHAQSXLAXWACQVVLMGXVEGYXIAGGPLGEXD*PIVP 133
            GNP+LIHAQS LA WACQVVLMG +EGY + GGPLGE   P+ P
Sbjct:   32 GNPNLIHAQSILAIWACQVVLMGLIEGYRVGGGPLGEGLDPLYP 75          
BLAST of GO241397 vs. ExPASy Swiss-Prot
Match: CB21_PINTH (Chlorophyll a-b binding protein type I, chloroplastic OS=Pinus thunbergii PE=2 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 2.159e-48
Identity = 70/80 (87.50%), Postives = 72/80 (90.00%), Query Frame = 3
Query:  120 DPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVXGKGPLXNLADXLADPVNNNAWAYAXNFVPGK 359
            DPL PGG+FDPLGLADDPEA AELKVKEIKNGRLAMFSMFGFFVQAIV GKGP+ NL D LADPV NNAWAYA NFVPGK
Sbjct:  187 DPLLPGGAFDPLGLADDPEACAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHLADPVANNAWAYATNFVPGK 266          

HSP 2 Score: 67.3958 bits (163), Expect = 2.159e-48
Identity = 30/44 (68.18%), Postives = 35/44 (79.55%), Query Frame = 2
Query:    2 GNPSLIHAQSXLAXWACQVVLMGXVEGYXIAGGPLGEXD*PIVP 133
            GNP+LIHAQS LA WACQVVLMG +EGY + GG LGE   P++P
Sbjct:  148 GNPNLIHAQSILAIWACQVVLMGLIEGYRVGGGTLGEGLDPLLP 191          
BLAST of GO241397 vs. ExPASy Swiss-Prot
Match: CB23_ORYSJ (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. japonica GN=RCABP89 PE=2 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.951e-46
Identity = 66/80 (82.50%), Postives = 72/80 (90.00%), Query Frame = 3
Query:  120 DPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVXGKGPLXNLADXLADPVNNNAWAYAXNFVPGK 359
            D +YPGG+FDPLGLADDP+ FAELKVKE+KNGRLAMFSMFGFFVQAIV GKGP+ NL D +ADPV NNAWAYA NFVPGK
Sbjct:  184 DKVYPGGAFDPLGLADDPDTFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVANNAWAYATNFVPGK 263          

HSP 2 Score: 63.5438 bits (153), Expect = 1.951e-46
Identity = 28/37 (75.68%), Postives = 31/37 (83.78%), Query Frame = 2
Query:    2 GNPSLIHAQSXLAXWACQVVLMGXVEGYXIAGGPLGE 112
            GNP+L+HAQS LA WA QVVLMG VEGY + GGPLGE
Sbjct:  145 GNPNLVHAQSILAIWAVQVVLMGFVEGYRVGGGPLGE 181          
BLAST of GO241397 vs. ExPASy Swiss-Prot
Match: CB23_ORYSI (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_012078 PE=2 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.951e-46
Identity = 66/80 (82.50%), Postives = 72/80 (90.00%), Query Frame = 3
Query:  120 DPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVXGKGPLXNLADXLADPVNNNAWAYAXNFVPGK 359
            D +YPGG+FDPLGLADDP+ FAELKVKE+KNGRLAMFSMFGFFVQAIV GKGP+ NL D +ADPV NNAWAYA NFVPGK
Sbjct:  184 DKVYPGGAFDPLGLADDPDTFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVANNAWAYATNFVPGK 263          

HSP 2 Score: 63.5438 bits (153), Expect = 1.951e-46
Identity = 28/37 (75.68%), Postives = 31/37 (83.78%), Query Frame = 2
Query:    2 GNPSLIHAQSXLAXWACQVVLMGXVEGYXIAGGPLGE 112
            GNP+L+HAQS LA WA QVVLMG VEGY + GGPLGE
Sbjct:  145 GNPNLVHAQSILAIWAVQVVLMGFVEGYRVGGGPLGE 181          
BLAST of GO241397 vs. ExPASy Swiss-Prot
Match: CB21_RAPSA (Chlorophyll a-b binding of LHCII type 1 protein (Fragment) OS=Raphanus sativus PE=2 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 1.987e-46
Identity = 70/80 (87.50%), Postives = 71/80 (88.75%), Query Frame = 3
Query:  120 DPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVXGKGPLXNLADXLADPVNNNAWAYAXNFVPGK 359
            D LYPGGSFDPL    DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIV GKGPL NLAD LADPVNNNAWA+A NFVPGK
Sbjct:   45 DLLYPGGSFDPLASLTDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 124          

HSP 2 Score: 62.003 bits (149), Expect = 1.987e-46
Identity = 30/45 (66.67%), Postives = 35/45 (77.78%), Query Frame = 2
Query:    2 GNPSLIHAQSXLAXWACQVVLMGXVEGYXIAG-GPLGEXD*PIVP 133
            GNPSL+HAQS LA WA QV+LMG VEGY +AG GPLGE +  + P
Sbjct:    5 GNPSLVHAQSILAIWATQVILMGAVEGYRVAGDGPLGEAEDLLYP 49          
BLAST of GO241397 vs. ExPASy Swiss-Prot
Match: CB2_DUNSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella salina PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.185e-39
Identity = 59/78 (75.64%), Postives = 65/78 (83.33%), Query Frame = 3
Query:  120 DPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVXGKGPLXNLADXLADPVNNNAWAYAXNFVP 353
            DPLYPG +FDPLGLADDP+ FAELKVKEIKNGRLAMF+  GFFVQAIV GKGP+ NL D LA+P  NNA+AYA  F P
Sbjct:  195 DPLYPGEAFDPLGLADDPDTFAELKVKEIKNGRLAMFACLGFFVQAIVTGKGPIENLTDHLANPAENNAFAYATKFTP 272          

HSP 2 Score: 57.3806 bits (137), Expect = 1.185e-39
Identity = 28/44 (63.64%), Postives = 32/44 (72.73%), Query Frame = 2
Query:    2 GNPSLIHAQSXLAXWACQVVLMGXVEGYXIAGGPLGEXD*PIVP 133
            GNPSLIHAQ+ +A  A QVVLMG VEGY + GGP GE   P+ P
Sbjct:  156 GNPSLIHAQNIVATLAVQVVLMGLVEGYRVNGGPAGEGLDPLYP 199          
The following BLAST results are available for this feature:
BLAST of GO241397 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
CB22_HORVU4.121e-5391.46Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB21_SOYBN3.439e-5291.46Chlorophyll a-b binding protein, chloroplastic (Fr... [more]
CB22_SOYBN2.198e-5187.80Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB23_APIGR4.056e-5086.59Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB22_PINSY4.448e-4987.50Chlorophyll a-b binding protein type 2 member 2 (F... [more]
CB21_PINTH2.159e-4887.50Chlorophyll a-b binding protein type I, chloroplas... [more]
CB23_ORYSJ1.951e-4682.50Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB23_ORYSI1.951e-4682.50Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB21_RAPSA1.987e-4687.50Chlorophyll a-b binding of LHCII type 1 protein (F... [more]
CB2_DUNSA1.185e-3975.64Chlorophyll a-b binding protein of LHCII type I, c... [more]

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Properties
Property NameValue
Genbank description45 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 127 5, mRNA sequence.