GO241368

Overview
NameGO241368
Unique NameGO241368
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
GO241368_ssr239 microsatellite GO241368_ssr239:239..250. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig10455 contig Csv1_Contig10455:689..1130. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of GO241368 vs. ExPASy Swiss-Prot
Match: FER1_APHFL (Ferredoxin-1 OS=Aphanizomenon flos-aquae PE=1 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 2.977e-17
Identity = 38/66 (57.58%), Postives = 48/66 (72.73%), Query Frame = 2
Query:    2 AGIDLPYSCRAGSCSTCAXXXXXXXXXXXXXXFXEDDQIDAGYVXXCVAYPTSDVTVETPKDEEMF 199
            AG+DLPYSCRAG+CSTCA              F +DDQ++AGYV  CVAYPTSDVT+ET K+E+++
Sbjct:   33 AGLDLPYSCRAGACSTCAGKLVTGTIDQSDQSFLDDDQVEAGYVLTCVAYPTSDVTIETHKEEDLY 98          
BLAST of GO241368 vs. ExPASy Swiss-Prot
Match: FER_CHLFR (Ferredoxin OS=Chlorogloeopsis fritschii PE=1 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 3.888e-17
Identity = 39/66 (59.09%), Postives = 47/66 (71.21%), Query Frame = 2
Query:    2 AGIDLPYSCRAGSCSTCAXXXXXXXXXXXXXXFXEDDQIDAGYVXXCVAYPTSDVTVETPKDEEMF 199
            AG+DLPYSCRAG+CSTCA              F +DDQI+AGYV  CVAYPTSD T+ET K+EE++
Sbjct:   34 AGLDLPYSCRAGACSTCAGKIKSGTVDQSDQSFLDDDQIEAGYVLTCVAYPTSDCTIETHKEEELY 99          
BLAST of GO241368 vs. ExPASy Swiss-Prot
Match: FER_SYNY4 (Ferredoxin OS=Synechocystis sp. (strain PCC 6714) PE=1 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 8.661e-17
Identity = 38/66 (57.58%), Postives = 47/66 (71.21%), Query Frame = 2
Query:    2 AGIDLPYSCRAGSCSTCAXXXXXXXXXXXXXXFXEDDQIDAGYVXXCVAYPTSDVTVETPKDEEMF 199
            AG+DLPYSCRAG+CSTCA              F +DDQI+AGYV  CVAYPTSD T+ET K+E+++
Sbjct:   32 AGLDLPYSCRAGACSTCAGKITAGSVDQSDQSFLDDDQIEAGYVLTCVAYPTSDCTIETHKEEDLY 97          
BLAST of GO241368 vs. ExPASy Swiss-Prot
Match: FER_SYNY3 (Ferredoxin-1 OS=Synechocystis sp. (strain PCC 6803) GN=petF PE=1 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 8.661e-17
Identity = 38/66 (57.58%), Postives = 47/66 (71.21%), Query Frame = 2
Query:    2 AGIDLPYSCRAGSCSTCAXXXXXXXXXXXXXXFXEDDQIDAGYVXXCVAYPTSDVTVETPKDEEMF 199
            AG+DLPYSCRAG+CSTCA              F +DDQI+AGYV  CVAYPTSD T+ET K+E+++
Sbjct:   32 AGLDLPYSCRAGACSTCAGKITAGSVDQSDQSFLDDDQIEAGYVLTCVAYPTSDCTIETHKEEDLY 97          
BLAST of GO241368 vs. ExPASy Swiss-Prot
Match: FER_MASLA (Ferredoxin OS=Mastigocladus laminosus GN=petF PE=1 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 8.661e-17
Identity = 39/66 (59.09%), Postives = 46/66 (69.70%), Query Frame = 2
Query:    2 AGIDLPYSCRAGSCSTCAXXXXXXXXXXXXXXFXEDDQIDAGYVXXCVAYPTSDVTVETPKDEEMF 199
            AGIDLPYSCRAG+CSTCA              F +DDQI+AGYV  CVAYPTSD  +ET K+EE++
Sbjct:   34 AGIDLPYSCRAGACSTCAGKLISGTVDQSDQSFLDDDQIEAGYVLTCVAYPTSDCVIETHKEEELY 99          
BLAST of GO241368 vs. ExPASy Swiss-Prot
Match: FER1_SYNP6 (Ferredoxin-1 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=petF1 PE=1 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 3.291e-16
Identity = 38/65 (58.46%), Postives = 46/65 (70.77%), Query Frame = 2
Query:    5 GIDLPYSCRAGSCSTCAXXXXXXXXXXXXXXFXEDDQIDAGYVXXCVAYPTSDVTVETPKDEEMF 199
            GIDLPYSCRAG+CSTCA              F +DDQI AG+V  CVAYPTSDVT+ET K+E+++
Sbjct:   35 GIDLPYSCRAGACSTCAGKVVSGTVDQSDQSFLDDDQIAAGFVLTCVAYPTSDVTIETHKEEDLY 99          
BLAST of GO241368 vs. ExPASy Swiss-Prot
Match: FER1_SYNE7 (Ferredoxin-1 OS=Synechococcus elongatus (strain PCC 7942) GN=petF PE=3 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 3.291e-16
Identity = 38/65 (58.46%), Postives = 46/65 (70.77%), Query Frame = 2
Query:    5 GIDLPYSCRAGSCSTCAXXXXXXXXXXXXXXFXEDDQIDAGYVXXCVAYPTSDVTVETPKDEEMF 199
            GIDLPYSCRAG+CSTCA              F +DDQI AG+V  CVAYPTSDVT+ET K+E+++
Sbjct:   35 GIDLPYSCRAGACSTCAGKVVSGTVDQSDQSFLDDDQIAAGFVLTCVAYPTSDVTIETHKEEDLY 99          
BLAST of GO241368 vs. ExPASy Swiss-Prot
Match: FER1_ANAVT (Ferredoxin-1 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=petF1 PE=1 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 9.576e-16
Identity = 36/65 (55.38%), Postives = 46/65 (70.77%), Query Frame = 2
Query:    5 GIDLPYSCRAGSCSTCAXXXXXXXXXXXXXXFXEDDQIDAGYVXXCVAYPTSDVTVETPKDEEMF 199
            G DLP+SCRAG+CSTCA              F +DDQI+AGYV  CVAYPTSDVT++T K+E+++
Sbjct:   35 GYDLPFSCRAGACSTCAGKLVSGTVDQSDQSFLDDDQIEAGYVLTCVAYPTSDVTIQTHKEEDLY 99          
BLAST of GO241368 vs. ExPASy Swiss-Prot
Match: FER_SPIMA (Ferredoxin OS=Spirulina maxima PE=1 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 1.633e-15
Identity = 36/66 (54.55%), Postives = 46/66 (69.70%), Query Frame = 2
Query:    2 AGIDLPYSCRAGSCSTCAXXXXXXXXXXXXXXFXEDDQIDAGYVXXCVAYPTSDVTVETPKDEEMF 199
            AG+DLPYSCRAG+CSTCA              F +DDQI+AGYV  CVAYPTSD T++T ++E ++
Sbjct:   34 AGLDLPYSCRAGACSTCAGKITSGSIDQSDQSFLDDDQIEAGYVLTCVAYPTSDCTIQTHQEEGLY 99          
BLAST of GO241368 vs. ExPASy Swiss-Prot
Match: FER_BRANA (Ferredoxin OS=Brassica napus PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.633e-15
Identity = 38/65 (58.46%), Postives = 44/65 (67.69%), Query Frame = 2
Query:    2 AGIDLPYSCRAGSCSTCAXXXXXXXXXXXXXXFXEDDQIDAGYVXXCVAYPTSDVTVETPKDEEM 196
            AGIDLPYSCRAGSCS+CA              F +DDQI  G+V  C AYPTSDVT+ET K+EE+
Sbjct:   31 AGIDLPYSCRAGSCSSCAGKVVSGFVDQSDESFLDDDQIAEGFVLTCAAYPTSDVTIETHKEEEL 95          
The following BLAST results are available for this feature:
BLAST of GO241368 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 100
Match NameE-valueIdentityDescription
FER1_APHFL2.977e-1757.58Ferredoxin-1 OS=Aphanizomenon flos-aquae PE=1 SV=2[more]
FER_CHLFR3.888e-1759.09Ferredoxin OS=Chlorogloeopsis fritschii PE=1 SV=2[more]
FER_SYNY48.661e-1757.58Ferredoxin OS=Synechocystis sp. (strain PCC 6714) ... [more]
FER_SYNY38.661e-1757.58Ferredoxin-1 OS=Synechocystis sp. (strain PCC 6803... [more]
FER_MASLA8.661e-1759.09Ferredoxin OS=Mastigocladus laminosus GN=petF PE=1... [more]
FER1_SYNP63.291e-1658.46Ferredoxin-1 OS=Synechococcus sp. (strain ATCC 271... [more]
FER1_SYNE73.291e-1658.46Ferredoxin-1 OS=Synechococcus elongatus (strain PC... [more]
FER1_ANAVT9.576e-1655.38Ferredoxin-1 OS=Anabaena variabilis (strain ATCC 2... [more]
FER_SPIMA1.633e-1554.55Ferredoxin OS=Spirulina maxima PE=1 SV=2[more]
FER_BRANA1.633e-1558.46Ferredoxin OS=Brassica napus PE=1 SV=1[more]

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Properties
Property NameValue
Genbank description14 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 30 5, mRNA sequence.