EY728778

Overview
NameEY728778
Unique NameEY728778
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length586
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11780 contig Csv1_Contig11780:1..585. BLAST: Citrus Unigene V1 Contigs to SwissProt
Homology
BLAST of EY728778 vs. ExPASy Swiss-Prot
Match: ECPD_ECOLI (Chaperone protein ecpD OS=Escherichia coli (strain K12) GN=ecpD PE=2 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 7.435e-14
Identity = 48/152 (31.58%), Postives = 81/152 (53.29%), Query Frame = -3
Query:  162 DAGQHSVLRVLY-AGEGCPGDRESLFWLNVMEIPMKPE-----SPDSMQFAVRQRLKLFYRPAGLEGGSAQAVQQVA--WSSPDGH-SIAVTNESAFHVSVVHLQIDSGGPAHALEDYLL--FKPGERKFLDITAPFNAGTRIHFTEFTDIG 584
            DA +   ++++Y A    P DRES+FW NV+E+P KP+     +   +Q A R R+KLFYRP GL+G  ++A   +   WS  +G  S+ VTN + ++VS     +++ G  + ++  ++  F     K   +    N+  ++HF    D G
Sbjct:   87 DAKRGQTIKLMYTASTSLPKDRESVFWFNVLEVPPKPDAEKVANQSLLQLAFRTRIKLFYRPDGLKGNPSEAPLALKWFWSGSEGKASLRVTNPTPYYVSFSSGDLEASGKRYPIDVKMIAPFSDEVMKVNGLNGKANS-AKVHFYAINDFG 237          
BLAST of EY728778 vs. ExPASy Swiss-Prot
Match: LPFB_SALTY (Chaperone protein lpfB OS=Salmonella typhimurium GN=lpfB PE=3 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 9.710e-14
Identity = 39/91 (42.86%), Postives = 59/91 (64.84%), Query Frame = -3
Query:  312 QHSVLRVLYAGEGCPGDRESLFWLNVMEIPMKPESPDS---MQFAVRQRLKLFYRPAGLEGGSAQAVQQVAWSSPDGHSIAVTNESAFHVS 575
            +++VLR++      P DRES++W+NV  IP K E  ++   +Q AVR RLKLFYRPAGL+G S     ++ ++S   + I V N SAF+++
Sbjct:   85 KNNVLRIVNTTNTLPQDRESVYWINVKAIPAKSEDAEAKNVLQIAVRTRLKLFYRPAGLKGNSMDGWNKLQFTSAGANQIKVENPSAFNLT 175          
BLAST of EY728778 vs. ExPASy Swiss-Prot
Match: FIMC_SALTY (Chaperone protein fimC OS=Salmonella typhimurium GN=fimC PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.392e-12
Identity = 44/140 (31.43%), Postives = 73/140 (52.14%), Query Frame = -3
Query:  162 SVLRVLYAGEGCPGDRESLFWLNVMEIPMKP----ESPDSMQFAVRQRLKLFYRPAGLEGGSAQAVQQVAWSSPDGHSIAVTNESAFHVSVVHLQIDSGGPAHALEDYLLFKPGERKFLDITAPFNAGTRIHFTEFTDIG 569
            + LR++YAG+  PGDRESLFW+NV  IP       E  + +Q A+  R+KLF RPA L      A   + +S    H + +TN SA+++++V++ +     A  +++ ++     +  + I  P  A   + F    D G
Sbjct:   88 NTLRIIYAGQPLPGDRESLFWMNVKAIPSVDKSHIEGKNVLQLAILSRIKLFVRPANLPQTPEDAPTLLKFSRVGNH-LKITNPSAYYLTLVNISVG----AKKIDNVMI---APKSDMQIPLPTGAQGNVTFQSVNDYG 219          
BLAST of EY728778 vs. ExPASy Swiss-Prot
Match: FIMB_BORPE (Chaperone protein fimB/fhaD OS=Bordetella pertussis GN=fimB PE=3 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 2.392e-12
Identity = 41/121 (33.88%), Postives = 62/121 (51.24%), Query Frame = -3
Query:  243 DAGQHSVLRVLYAG----EGCPGDRESLFWLNVMEIPMKP---ESPDSMQFAVRQRLKLFYRPAGLEGGSAQAVQQVAWSSPDGHSIAVTNESAFHVSVVHLQIDSGGPAHALEDYLLFKP 584
            D G+   LR+ + G    +  P DRES+FWLNV+E+P K    E    +Q  +R RLKLFYRP GL G    A   + +       + V N + ++V++  L++   G AH  +   +  P
Sbjct:   89 DPGKGQTLRIFFNGYPDGKTLPSDRESVFWLNVLEVPPKATPEEGHGVLQLTIRSRLKLFYRPKGLSGNPLTAAADLTFKRKPNGVLEVHNPTPYYVNLQKLEVGENG-AHGSKTPWMLAP 208          
BLAST of EY728778 vs. ExPASy Swiss-Prot
Match: YRAI_ECOLI (Uncharacterized fimbrial chaperone yraI OS=Escherichia coli (strain K12) GN=yraI PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.187e-11
Identity = 44/145 (30.34%), Postives = 72/145 (49.66%), Query Frame = -3
Query:  162 DAGQHSVLRVLYAGEGCPGDRESLFWLNVMEIPMKPESPD----SMQFAVRQRLKLFYRPAGLEGGSAQAVQQVAWSSPDGHSIAVTNESAFHVSVVHLQIDSGGPAHALEDYLLFKPGERKFLDITAPFNAGTRIHFTEFTDIG 584
            +AG  S LR++   +  P ++ESLF++NV  IP K +S D     +    + R+K+FYRPA L+G    A + + +   D HS+ + N + ++V    L +D       +E      PGE K L +  P + G  + +    D G
Sbjct:   82 EAGDDSSLRIIKTADNLPENKESLFYINVRAIPAKKKSDDVNANELTLVFKTRIKMFYRPAHLKGRVNDAWKSLEFKRSD-HSLNIYNPTEYYVVFAGLAVDKTDLTSKIE---YIAPGEHKQLPL--PASGGKNVKWAAINDYG 220          
BLAST of EY728778 vs. ExPASy Swiss-Prot
Match: MRKB_KLEPN (Chaperone protein mrkB OS=Klebsiella pneumoniae GN=mrkB PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.454e-11
Identity = 43/147 (29.25%), Postives = 76/147 (51.70%), Query Frame = -3
Query:  162 DAGQHSVLRV-LYAGEGCPGDRESLFWLNVMEIP-----MKPESPDSMQFAVRQRLKLFYRPAGLEGGSAQAVQQVAWSSPDGHSIAVTNESAFHVSVVHLQIDSGGPAHALEDYLLFKPGERKFLDITAPFNAGTRIHFTEFTDIG 584
            DA     LR+ L +  G   D+E+L+WLN++EIP      K E  + +Q A+R R K  YRPAGL  G+  A  +    S +G S++V+N + F+++V  +  + G   ++    ++F P   + + +++  + G  +      D G
Sbjct:   81 DAKSGQTLRIKLGSNAGLAKDKETLWWLNLLEIPPVEASQKNEGQNILQLAIRSRFKFIYRPAGL--GNRDAAAEKLALSANGSSLSVSNPTPFYITVSRISRNGGKALNS--KTVMFAPQSSQTIALSSAVSKGETLTVNNINDYG 223          
The following BLAST results are available for this feature:
BLAST of EY728778 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
ECPD_ECOLI7.435e-1431.58Chaperone protein ecpD OS=Escherichia coli (strain... [more]
LPFB_SALTY9.710e-1442.86Chaperone protein lpfB OS=Salmonella typhimurium G... [more]
FIMC_SALTY2.392e-1231.43Chaperone protein fimC OS=Salmonella typhimurium G... [more]
FIMB_BORPE2.392e-1233.88Chaperone protein fimB/fhaD OS=Bordetella pertussi... [more]
YRAI_ECOLI1.187e-1130.34Uncharacterized fimbrial chaperone yraI OS=Escheri... [more]
MRKB_KLEPN3.454e-1129.25Chaperone protein mrkB OS=Klebsiella pneumoniae GN... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-704-008-E02-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728778 ID=EY728778; Name=EY728778; organism=Citrus sinensis; type=EST; length=586bp
GTCGATCCGCTGCCGTCTTCCCGGCAGGCCAGCGCATAACTGGTGGCGGG
GAAGGCGGCGCAAGTGCACAGGGGCGGGCAATAACAAGTGTTTAACGTGT
GGCATGGGTCCGTGTTCCCCGCGAAATATCACTTGAAGGCTGCGCTATGG
CGCCCCTGCAAACCGATATCCGTGAATTCGGTAAAATGGATTCGCGTTCC
CGCGTTGAAGGGCGCCGTAATGTCTAAGAACTTGCGTTCCCCGGGCTTGA
ACAACAAGTAGTCTTCCAACGCGTGAGCCGGGCCGCCGGAGTCAATTTGC
AGGTGCACCACAGACACGTGAAAGGCACTCTCATTGGTCACGGCAATGGA
GTGCCCGTCGGGGCTGCTCCATGCCACTTGCTGCACGGCTTGTGCCGAGC
CGCCCTCAAGCCCTGCCGGGCGATAGAACAACTTGAGGCGCTGGCGCACG
GCAAACTGCATGCTGTCGGGGCTTTCCGGCTTCATCGGGATTTCCATGAC
GTTGAGCCAGAACAGCGACTCCCTATCACCTGGGCAACCTTCACCGGCAT
ACAGGACCCGCAGCACTGAATGTTGGCCGGCATCCA
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