EY730901

Overview
NameEY730901
Unique NameEY730901
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length697
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of EY730901 vs. ExPASy Swiss-Prot
Match: RH3_ARATH (DEAD-box ATP-dependent RNA helicase 3 OS=Arabidopsis thaliana GN=RH3 PE=1 SV=2)

HSP 1 Score: 129.798 bits (325), Expect = 1.374e-29
Identity = 62/79 (78.48%), Postives = 70/79 (88.61%), Query Frame = 1 
Query:   13 GFMSATSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKELLNKQIPPGNTISKITKLPVLQDDGPSSDNY 249
            GF+SA SV GFLSD+Y TAADE+GKI +IADDR+QGAVFDLPEEIAKELL K +P GN++S ITKLP LQDDGPSSDNY
Sbjct:  563 GFLSARSVTGFLSDLYRTAADEVGKIFLIADDRIQGAVFDLPEEIAKELLEKDVPEGNSLSMITKLPPLQDDGPSSDNY 641
[Close]
BLAST of EY730901 vs. ExPASy Swiss-Prot
Match: RH3_ORYSJ (DEAD-box ATP-dependent RNA helicase 3 OS=Oryza sativa subsp. japonica GN=Os03g0827700 PE=2 SV=2)

HSP 1 Score: 117.857 bits (294), Expect = 5.404e-26
Identity = 54/79 (68.35%), Postives = 68/79 (86.08%), Query Frame = 1 
Query:   13 GFMSATSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKELLNKQIPPGNTISKITKLPVLQDDGPSSDNY 249
            GF S  SV GFLSDV   AADE+GKI + AD++VQGAVFDLPEEIA++LL+ ++PPGNTI+K+TKLP LQDDGP++D+Y
Sbjct:  563 GFFSPRSVTGFLSDVSSAAADEVGKIFLTADEKVQGAVFDLPEEIARDLLSMELPPGNTITKVTKLPALQDDGPATDSY 641
The following BLAST results are available for this feature:
BLAST of EY730901 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
RH3_ARATH1.374e-2978.48DEAD-box ATP-dependent RNA helicase 3 OS=Arabidops... [more]
RH3_ORYSJ5.404e-2668.35DEAD-box ATP-dependent RNA helicase 3 OS=Oryza sat... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-704-036-C03-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY730901 ID=EY730901; Name=EY730901; organism=Citrus sinensis; type=EST; length=697bp
CACGCGTCCGGGGGATTTATGTCTGCTACATCTGTCATGGGATTTCTTTC
TGACGTTTATCCTACAGCTGCCGATGAAATTGGAAAAATACACATAATTG
CAGATGACAGGGTTCAGGGAGCTGTTTTTGATCTTCCGGAGGAGATTGCA
AAGGAGTTGCTAAATAAACAAATACCTCCTGGAAACACCATTTCCAAGAT
CACTAAGTTGCCTGTCTTGCAAGATGATGGGCCCTCAAGCGATAACTATG
GCAGGTTCTCTAGCGGGGATCGCTTTTCCAGAGGAGGAGGTTCTCGCTTT
TCCAGGGGAGGAGCCAGGGGAGGAGGTTCTCGCTTTTCCAGGGGAGGAGC
CACGGGAGGAGGTTTTAGATCATCCCGCAGTTGGGGCAGTGATGATGAGG
ATGGATTTAGTTCATCCCGTGGCGGTCCCGGTTTTATATCTGGAAATACC
GAGGGTCCAGGTTTTCAGCAAGCAGTGATGGATGATTGGTTGATTGGTGG
TGCTAGTCTGGCGCTTCTCGTCGCGGGGGCCGTCGGCCGGGGCGCGGCCT
GGCTCCGCGCTCGCGGGTCGTTGCTACTGGATGTTGCGCGACCCGCGCCC
CGCTGATCTTCCTCCCCGCGGTTCTGGGTGGCCGTGGTCCGATTCTCGGC
GCGCTGTGAGTGCCGCGCGCCCAGCGCGGCGGTTCGTGCAGTTGGCG
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