EY715968

Overview
NameEY715968
Unique NameEY715968
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length908
Libraries
Library NameType
Sweet orange fruit, development stadium (3 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY715968 vs. ExPASy Swiss-Prot
Match: CCD4_ARATH (Probable carotenoid cleavage dioxygenase 4, chloroplastic OS=Arabidopsis thaliana GN=CCD4 PE=1 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 3.371e-43
Identity = 105/221 (47.51%), Postives = 131/221 (59.28%), Query Frame = 2
Query:  233 APSLFTNI-------IDRPLHPSVDPKHVFTGNFAPV-DELGPTECPVVDGKLPDSLTGTYIRNGPNPQHMPRGPLHFFEGDGMLHSMQLSKGRAIYSSRYVKTYKYKLERDAGGQIFPNVFSGFYGLVDMVQCVAST-ARVLMGHVNLKKGLGLPIQVLASFPPSFLLLGSPIWPTL*KDSKKGTWKLRGK-GILRKIF*NMNALQKKNDP--KETFAFK 859
            A +LFT +       ID P  PSVDPKHV + NFAPV DEL PT+C ++ G LP SL G YIRNGPNPQ +PRGP H F+GDGMLH++++  G+A   SRYVKTYKY +E+  G  + PNVFSGF G+   V   A T ARVL G  N   G+GL    LA F      LG    P   + ++ G  +  G+     K+  +M A   K DP   ETFAF+
Sbjct:   82 ATALFTTVEDVINTFIDPPSRPSVDPKHVLSDNFAPVLDELPPTDCEIIHGTLPLSLNGAYIRNGPNPQFLPRGPYHLFDGDGMLHAIKIHNGKATLCSRYVKTYKYNVEKQTGAPVMPNVFSGFNGVTASVARGALTAARVLTGQYNPVNGIGLANTSLAFFSNRLFALGESDLPYAVRLTESGDIETIGRYDFDGKLAMSMTA-HPKTDPITGETFAFR 301          
BLAST of EY715968 vs. ExPASy Swiss-Prot
Match: CCD_CROSA (Carotenoid 9,10(9',10')-cleavage dioxygenase OS=Crocus sativus GN=CCD PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 3.995e-27
Identity = 60/149 (40.27%), Postives = 80/149 (53.69%), Query Frame = 2
Query:  230 SAPSLFTNIIDRPLHPSVDPKHVFTGNFAPV-DELGPTECPVVDGKLPDSLTGTYIRNGPNPQHMPRGPLHFFEGDGMLHSMQLSKGRAIYSSRYVKTYKYKLERDAGGQIFPNV--FSGFYGLVDMVQCVASTARVLMGHVNLKKGLG 667
            SA  L    +    H    P H  +GNFAPV DE  P     V G LP+ L G ++R GPNP+ MP    H+F+GDGM+H M++  G+A Y+SRYVKT + K E    G  F  +    GF+GL  MVQ     A++ +  V+   G G
Sbjct:   29 SAVDLIEKAVVYLFHDKSKPCHYLSGNFAPVVDETPPCPDLPVRGHLPECLNGEFVRVGPNPKFMPVAGYHWFDGDGMIHGMRIKDGKATYASRYVKTSRLKQEEYFEGPKFMKIGDLKGFFGLF-MVQMQLLRAKLKVIDVSYGVGTG 176          

HSP 2 Score: 43.8986 bits (102), Expect = 3.995e-27
Identity = 23/57 (40.35%), Postives = 35/57 (61.40%), Query Frame = 1
Query:  661 IGFANTSLGFFSAKLLALGESDLAYIIKGLQKGDLET*GKGDFEENFLKHECPSKKK 831
            +G  NT+L +   KLLAL E+D  Y++K L+ GDL+T G  D+++  L H   +  K
Sbjct:  173 VGTGNTALIYHHGKLLALSEADKPYVVKVLEDGDLQTLGLLDYDKR-LSHSFTAHPK 228          
BLAST of EY715968 vs. ExPASy Swiss-Prot
Match: CCD1_PEA (Carotenoid 9,10(9',10')-cleavage dioxygenase 1 OS=Pisum sativum GN=CCD1 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 3.293e-26
Identity = 52/127 (40.94%), Postives = 72/127 (56.69%), Query Frame = 2
Query:  224 TKSAPSLFTNIIDRPLHPSVDPKHVFTGNFAPV-DELGPTECPVVDGKLPDSLTGTYIRNGPNPQHMPRGPLHFFEGDGMLHSMQLSKGRAIYSSRYVKTYKYKLERDAGGQIFPNV--FSGFYGLV 595
            T  A  L   II +  + S  P H  +GNFAPV DE  P +   V G LPD L G ++R GPNP+  P    H+F+GDGM+H +++  G+A Y SR+VKT ++K E    G  F  +    G +GL+
Sbjct:   23 TSKAVDLLEKIIVKLFYDSSLPHHWLSGNFAPVKDETPPVKDLTVQGHLPDCLNGEFVRVGPNPKFSPVAGYHWFDGDGMIHGLRIKDGKASYVSRFVKTSRFKQEEYFNGSKFMKIGDLKGLFGLL 149          

HSP 2 Score: 42.3578 bits (98), Expect = 3.293e-26
Identity = 24/53 (45.28%), Postives = 31/53 (58.49%), Query Frame = 1
Query:  664 GFANTSLGFFSAKLLALGESDLAYIIKGLQKGDLET*GKGDFEE----NFLKH 810
            G ANT+L +   KLLAL E D  Y IK  + GDL+T G  D+++    NF  H
Sbjct:  170 GTANTALVYHHQKLLALSEGDKPYAIKVFEDGDLQTLGMLDYDKRLGHNFTAH 222          
BLAST of EY715968 vs. ExPASy Swiss-Prot
Match: CCD1_PHAVU (Carotenoid 9,10(9',10')-cleavage dioxygenase 1 OS=Phaseolus vulgaris GN=CCD1 PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.012e-24
Identity = 48/120 (40.00%), Postives = 69/120 (57.50%), Query Frame = 2
Query:  242 LFTNIIDRPLHPSVDPKHVFTGNFAPVDELGPTECPVVDGKLPDSLTGTYIRNGPNPQHMPRGPLHFFEGDGMLHSMQLSKGRAIYSSRYVKTYKYKLERDAGGQIFPNV--FSGFYGLV 595
            L   ++ + L+ S  P H  TGNF PV E  PT+   V G LPD L G ++R GPNP+  P    H+F+GDGM+H +++  G+A Y SR+V+T + K E   G   F  +    G +GL+
Sbjct:   32 LLEKLLVKFLYDSSLPHHYLTGNFGPVTETPPTKDLPVKGHLPDCLNGEFVRVGPNPKFAPVAGYHWFDGDGMIHGLRIKDGKATYVSRFVETSRLKQEEYFGRSKFMKIGDLKGLFGLL 151          

HSP 2 Score: 40.4318 bits (93), Expect = 1.012e-24
Identity = 20/44 (45.45%), Postives = 28/44 (63.64%), Query Frame = 1
Query:  664 GFANTSLGFFSAKLLALGESDLAYIIKGLQKGDLET*GKGDFEE 795
            G  NT+L +   KLLAL E+D  Y IK  + GDL+T G  D+++
Sbjct:  172 GTTNTALVYHHGKLLALSEADKPYAIKVFEDGDLQTLGMLDYDK 215          
BLAST of EY715968 vs. ExPASy Swiss-Prot
Match: CCD1_ARATH (Carotenoid 9,10(9',10')-cleavage dioxygenase 1 OS=Arabidopsis thaliana GN=CCD1 PE=1 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 2.232e-24
Identity = 47/121 (38.84%), Postives = 70/121 (57.85%), Query Frame = 2
Query:  242 LFTNIIDRPLHPSVDPKHVFTGNFAPV-DELGPTECPVVDGKLPDSLTGTYIRNGPNPQHMPRGPLHFFEGDGMLHSMQLSKGRAIYSSRYVKTYKYKLERDAGGQIFPNV--FSGFYGLV 595
            L   ++ + +H +  P H  +GNFAP+ DE  P +   V G LP+ L G ++R GPNP+       H+F+GDGM+H +++  G+A Y SRYVKT + K E   G   F  +    GF+GL+
Sbjct:   29 LLERLVVKLMHDASLPLHYLSGNFAPIRDETPPVKDLPVHGFLPECLNGEFVRVGPNPKFDAVAGYHWFDGDGMIHGVRIKDGKATYVSRYVKTSRLKQEEFFGAAKFMKIGDLKGFFGLL 149          

HSP 2 Score: 43.5134 bits (101), Expect = 2.232e-24
Identity = 22/44 (50.00%), Postives = 31/44 (70.45%), Query Frame = 1
Query:  664 GFANTSLGFFSAKLLALGESDLAYIIKGLQKGDLET*GKGDFEE 795
            G ANT+L +   KLLAL E+D  Y+IK L+ GDL+T G  D+++
Sbjct:  170 GTANTALVYHHGKLLALQEADKPYVIKVLEDGDLQTLGIIDYDK 213          
BLAST of EY715968 vs. ExPASy Swiss-Prot
Match: NCED5_ARATH (Probable 9-cis-epoxycarotenoid dioxygenase NCED5, chloroplastic OS=Arabidopsis thaliana GN=NCED5 PE=1 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 4.577e-24
Identity = 68/214 (31.78%), Postives = 101/214 (47.20%), Query Frame = 2
Query:  263 RPLHPSVDPKHVFTGNFAPVDELGPTECPVVDGKLPDSLTGTYIRNGPNPQHMPRGPLHFFEGDGMLHSMQLSKGRAIYSSRYVKTYKYKLERDAGGQIFPNVFSGFYGLVDMVQCVASTARVLMGHVNLKKGLGLPIQVLASFPPSFLLLGSPIWPTL*KDSKKGTWKLRGKGILRKIF*NMNALQKKNDP--KETFAFKLPLFSPTYISPLK 898
            +PL  +VDP+H  +GN+APV E        VDGK+PD + G Y+RNG NP   P    H F+GDGM+H+++++ G A YS R+ +T +   E+  G  IFP      +G   + + +   AR L G +N K G G+    L  F    L +     P   + +  G  +  G+        +      K DP  KE FA    +    Y+   K
Sbjct:  101 KPLPKTVDPRHQISGNYAPVPEQSVKSSLSVDGKIPDCIDGVYLRNGANPLFEPVSGHHLFDGDGMVHAVKITNGDASYSCRFTETERLVQEKQLGSPIFPKAIGELHGHSGIARLMLFYARGLFGLLNHKNGTGVANAGLVYFHDRLLAMSEDDLPYQVRVTDNGDLETIGRFDFDGQLSSAMIAHPKIDPVTKELFALSYDVVKKPYLKYFK 314          
BLAST of EY715968 vs. ExPASy Swiss-Prot
Match: NCED3_ARATH (9-cis-epoxycarotenoid dioxygenase NCED3, chloroplastic OS=Arabidopsis thaliana GN=NCED3 PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 7.307e-22
Identity = 67/209 (32.06%), Postives = 96/209 (45.93%), Query Frame = 2
Query:  266 PLHPSVDPKHVFTGNFAPVDELGPTECPVVDGKLPDSLTGTYIRNGPNPQHMPRGPLHFFEGDGMLHSMQLSKGRAIYSSRYVKTYKYKLERDAGGQIFPNVFSGFYGLVDMVQCVASTARVLMGHVNLKKGLGLPIQVLASFPPSFLLLGSPIWPTL*KDSKKGTWKLRGKGILRKIF*NMNALQKKNDPK--ETFAFKLPLFSPTYI 886
            PL  + DP     GNFAPV+E        V GKLPDS+ G Y+RNG NP H P    HFF+GDGM+H+++   G A Y+ R+ +T ++  ER  G  +FP      +G   + + +   AR   G V+   G G+    L  F    L +     P   + +  G  K  G+        +      K DP+  E FA    + S  Y+
Sbjct:  112 PLPKTADPSVQIAGNFAPVNEQPVRRNLPVVGKLPDSIKGVYVRNGANPLHEPVTGHHFFDGDGMVHAVKFEHGSASYACRFTQTNRFVQERQLGRPVFPKAIGELHGHTGIARLMLFYARAAAGIVDPAHGTGVANAGLVYFNGRLLAMSEDDLPYQVQITPNGDLKTVGRFDFDGQLESTMIAHPKVDPESGELFALSYDVVSKPYL 320          
BLAST of EY715968 vs. ExPASy Swiss-Prot
Match: NCED2_ARATH (9-cis-epoxycarotenoid dioxygenase NCED2, chloroplastic OS=Arabidopsis thaliana GN=NCED2 PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 4.736e-21
Identity = 56/181 (30.94%), Postives = 91/181 (50.28%), Query Frame = 2
Query:  239 SLFTNIIDRPLHPSVDPKHVFTGNFAPVDELGPTECPVVDGKLPDSLTGTYIRNGPNPQHMPRGPLHFFEGDGMLHSMQLSKGRAIYSSRYVKTYKYKLERDAGGQIFPNVFSGFYGLVDMVQCVASTARVLMGHVNLKKGLGLPIQVLASFPPSFLLLGSPIWPTL*KDSKKGTWKLRGK 781
            +L ++  D PL  + DP+    GN++PV E        V+G +PD + G YIRNG NP   P    H F+GDGM+H+++++ G A Y+ R+ KT +   E+  G  +FP      +G   + + +   AR L G +N + G+G+    L  F    L +     P   K ++ G  +  G+
Sbjct:   86 ALISHEQDSPLPKTADPRVQIAGNYSPVPESSVRRNLTVEGTIPDCIDGVYIRNGANPMFEPTAGHHLFDGDGMVHAVKITNGSASYACRFTKTERLVQEKRLGRPVFPKAIGELHGHSGIARLMLFYARGLCGLINNQNGVGVANAGLVYFNNRLLAMSEDDLPYQLKITQTGDLQTVGR 266          
BLAST of EY715968 vs. ExPASy Swiss-Prot
Match: NCED9_ARATH (9-cis-epoxycarotenoid dioxygenase NCED9, chloroplastic OS=Arabidopsis thaliana GN=NCED9 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 6.839e-20
Identity = 71/266 (26.69%), Postives = 113/266 (42.48%), Query Frame = 2
Query:  140 QNIPFRSSQKPKICAPIQSLMGTNSSYNTKSAPSLFTNII------------DRPLHP---SVDPKHVFTGNFAPVDELGPTECPVVDGKLPDSLTGTYIRNGPNPQHMPRGPLHFFEGDGMLHSMQLSKGRAIYSSRYVKTYKYKLERDAGGQIFPNVFSGFYGLVDMVQCVASTARVLMGHVNLKKGLGLPIQVLASFPPSFLLLGSPIWPTL*KDSKKGTWKLRGKGILRKIF*NMNALQKKNDP--KETFAFKLPLFSPTYI 886
            Q+  F+     K+C  + +L+   ++ N K  P   T  +            +R  HP   + DP     GNF PV E        V G +P+ + G Y+RNG NP H P    H F+GDGM+H+++   G   Y+ R+ +T +   ER+ G  +FP      +G + + + +    R L G V+   GLG+    L  F    L +     P   K ++ G  +  G+        +      K DP  +E FA    + S  Y+
Sbjct:  115 QSPTFKPPSWKKLCNDVTNLIPKTTNQNPKLNPVQRTAAMVLDAVENAMISHERRRHPHPKTADPAVQIAGNFFPVPEKPVVHNLPVTGTVPECIQGVYVRNGANPLHKPVSGHHLFDGDGMVHAVRFDNGSVSYACRFTETNRLVQERECGRPVFPKAIGELHGHLGIAKLMLFNTRGLFGLVDPTGGLGVANAGLVYFNGHLLAMSEDDLPYHVKVTQTGDLETSGRYDFDGQLKSTMIAHPKIDPETRELFALSYDVVSKPYL 380          
BLAST of EY715968 vs. ExPASy Swiss-Prot
Match: NCED1_PHAVU (9-cis-epoxycarotenoid dioxygenase NCED1, chloroplastic OS=Phaseolus vulgaris GN=NCED1 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.524e-19
Identity = 52/156 (33.33%), Postives = 78/156 (50.00%), Query Frame = 2
Query:  266 PLHPSVDPKHVFTGNFAPVDELGPTECPVVDGKLPDSLTGTYIRNGPNPQHMPRGPLHFFEGDGMLHSMQLSKGRAIYSSRYVKTYKYKLERDAGGQIFPNVFSGFYGLVDMVQCVASTARVLMGHVNLKKGLGLPIQVLASFPPSFLLLGSPIWP 733
            PL  + DPK    GNFAPV E    +   V GK+P  + G Y+RNG NP + P    HFF+GDGM+H+++ + G A Y+ R+ +T +   E+  G  +FP      +G   + + +   AR L   V+   G+G+    L  F    L +     P
Sbjct:  131 PLPKTADPKVQIAGNFAPVPEHAADQALPVVGKIPKCIDGVYVRNGANPLYEPVAGHHFFDGDGMVHAVKFTNGAASYACRFTETQRLAQEKSLGRPVFPKAIGELHGHSGIARLLLFYARSLFQLVDGSHGMGVANAGLVYFNNHLLAMSEDDLP 286          
The following BLAST results are available for this feature:
BLAST of EY715968 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
CCD4_ARATH3.371e-4347.51Probable carotenoid cleavage dioxygenase 4, chloro... [more]
CCD_CROSA3.995e-2740.27Carotenoid 9,10(9',10')-cleavage dioxygenase OS=Cr... [more]
CCD1_PEA3.293e-2640.94Carotenoid 9,10(9',10')-cleavage dioxygenase 1 OS=... [more]
CCD1_PHAVU1.012e-2440.00Carotenoid 9,10(9',10')-cleavage dioxygenase 1 OS=... [more]
CCD1_ARATH2.232e-2438.84Carotenoid 9,10(9',10')-cleavage dioxygenase 1 OS=... [more]
NCED5_ARATH4.577e-2431.78Probable 9-cis-epoxycarotenoid dioxygenase NCED5, ... [more]
NCED3_ARATH7.307e-2232.069-cis-epoxycarotenoid dioxygenase NCED3, chloropla... [more]
NCED2_ARATH4.736e-2130.949-cis-epoxycarotenoid dioxygenase NCED2, chloropla... [more]
NCED9_ARATH6.839e-2026.699-cis-epoxycarotenoid dioxygenase NCED9, chloropla... [more]
NCED1_PHAVU1.524e-1933.339-cis-epoxycarotenoid dioxygenase NCED1, chloropla... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-702-060-H03-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY715968 ID=EY715968; Name=EY715968; organism=Citrus sinensis; type=EST; length=908bp
CCACGCGTCCGAAAAAAAAAAACATCATCCACTCTACATATCTACCAAAA
GAATGGATCTCATGAATTACTTATCCTTAAAGATATCATACAATTCTCCA
CCAAAACCAAAGTTCACATATTACAATCACATCAACGAACAAAATATCCC
ATTCCGTTCTTCTCAAAAGCCAAAAATATGTGCACCCATACAATCTTTAA
TGGGAACAAATTCATCCTACAACACCAAATCCGCGCCATCATTGTTTACA
AACATTATTGATCGTCCTCTTCATCCTTCTGTTGATCCAAAGCATGTCTT
CACCGGAAACTTTGCTCCGGTGGACGAGCTTGGCCCGACTGAGTGCCCGG
TGGTTGATGGCAAGCTTCCGGACTCTCTAACCGGCACGTACATCCGAAAC
GGACCAAACCCACAGCACATGCCCCGTGGCCCTCTCCACTTCTTTGAAGG
TGATGGCATGCTTCACTCAATGCAATTATCTAAAGGGCGTGCAATTTACA
GTAGCCGCTATGTCAAGACTTACAAGTACAAGCTCGAGAGAGATGCCGGT
GGCCAAATTTTCCCCAACGTCTTCTCAGGATTTTATGGGCTTGTGGATAT
GGTTCAATGTGTTGCATCGACAGCAAGAGTGTTGATGGGTCACGTAAATC
TCAAAAAAGGATTGGGTTTGCCAATACAAGTCTTGGCTTCTTTTCCGCCA
AGCTTCTTGCTCTTGGGGAGTCCGATTTGGCCTACATTATAAAAGGACTC
CAAAAAGGGGACTTGGAAACTTAGGGGAAAGGGGATTTTGAGGAAAATTT
TTTGAAACATGAATGCCCTTCAAAAAAAAAATGACCCCAAGGAAACTTTT
GCTTTCAAATTACCCCTTTTTTCCCCCACCTACATCTCCCCGTTGAAGAA
TAGGGGAA
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