DY257118
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DY257118 vs. ExPASy Swiss-Prot
Match: RRP2_SPIOL (30S ribosomal protein 2, chloroplastic OS=Spinacia oleracea GN=PSRP2 PE=1 SV=1) HSP 1 Score: 191.43 bits (485), Expect = 9.223e-48 Identity = 96/128 (75.00%), Postives = 112/128 (87.50%), Query Frame = 2 Query: 377 KTVEDANAVIEKLNGTEFGGREIKVNITEKPLAQVDLSLLQAEDSNFVDSTYKVYVGNLAKTVTSEMLKKNFSEKGQVLSAKVSRVPGTSKSSGFGFVTFSSKEDAEAAISSLNNSLLEGQRIRVNNA 760 KTVEDANAVIEKLN TE GGR+IKVNITEKPL +D++ QAEDS FV+S YKVY+GNLAKTVT+E+LK FSEKG+VL AKV R PGTSKS+GFGFV+FSS+E+ EAAI +LNNS+LEGQ+IRVN A Sbjct: 133 KTVEDANAVIEKLNDTEIGGRKIKVNITEKPLEGMDIATTQAEDSQFVESPYKVYIGNLAKTVTNELLKDFFSEKGKVLGAKVQRTPGTSKSNGFGFVSFSSEEEVEAAIQALNNSVLEGQKIRVNKA 260
BLAST of DY257118 vs. ExPASy Swiss-Prot
Match: ROC5_NICSY (33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1) HSP 1 Score: 88.9669 bits (219), Expect = 6.447e-17 Identity = 49/130 (37.69%), Postives = 80/130 (61.54%), Query Frame = 2 Query: 380 TVEDANAVIEKLNGTEFGGREIKVNITEKPLA---QVDLSLLQAEDSNFVDSTYKVYVGNLAKTVTSEMLKKNFSEKGQVLSAKVSRVPGTSKSSGFGFVTFSSKEDAEAAISSLNNSLLEGQRIRVNNA 760 +VE+A I +G++ GGR +KVN E P +V + +++ FVDS +K+YV NL+ +TS+ L+ F+++ +SAKV + +S GFGF+TFSS E +A+ ++N LEG+ +R+N A Sbjct: 164 SVEEAKEAIRLFDGSQVGGRTVKVNFPEVPRGGEREVMSAKIRSTYQGFVDSPHKLYVANLSWALTSQGLRDAFADQPGFMSAKVIYDRSSGRSRGFGFITFSSAEAMNSALDTMNEVELEGRPLRLNVA 293
BLAST of DY257118 vs. ExPASy Swiss-Prot
Match: ROC1_NICPL (30 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1) HSP 1 Score: 81.6481 bits (200), Expect = 1.029e-14 Identity = 53/134 (39.55%), Postives = 76/134 (56.72%), Query Frame = 2 Query: 386 EDANAVIEKLNGTEFGGREIKVNITEKPLAQVDLSLLQAEDSNF---------VDSTYKVYVGNLAKTVTSEMLKKNFSEKGQVLSAKVSRVPGTSKSSGFGFVTFSSKEDAEAAISSLNNSLLEGQRIRVNNA 760 E+ A ++ NG E GR ++VN P + + S E+S+F DS+ +VYVGNLA V + L+ FSE+G+V+ AKV + +S GFGFVT+SS E+ AI SL+ L G+ IRV+ A Sbjct: 139 EEVEAACQQFNGYELDGRALRVNSGPPPEKRENSSF--RENSSFRGGSRGGGSFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVSPA 270
BLAST of DY257118 vs. ExPASy Swiss-Prot
Match: ROC1_NICSY (29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1) HSP 1 Score: 81.2629 bits (199), Expect = 1.344e-14 Identity = 50/126 (39.68%), Postives = 72/126 (57.14%), Query Frame = 2 Query: 386 EDANAVIEKLNGTEFGGREIKVNITEKPLAQVDLSLLQ-AEDSNFVDSTYKVYVGNLAKTVTSEMLKKNFSEKGQVLSAKVSRVPGTSKSSGFGFVTFSSKEDAEAAISSLNNSLLEGQRIRVNNA 760 E+ A ++ NG E GR ++VN P + + S + DS+ +VYVGNLA V + L+ FSE+G+V+ AKV + +S GFGFVT+SS E+ AI SL+ L G+ IRV+ A Sbjct: 139 EEVEAACQQFNGYELDGRALRVNSGPPPEKRENSSFRGGSRGGGSFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVSPA 264
BLAST of DY257118 vs. ExPASy Swiss-Prot
Match: ROC1_SPIOL (28 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea PE=1 SV=1) HSP 1 Score: 80.4925 bits (197), Expect = 2.293e-14 Identity = 52/127 (40.94%), Postives = 75/127 (59.06%), Query Frame = 2 Query: 380 TVEDANAVIEKLNGTEFGGREIKVNITEKPLAQVDLSLLQAEDSNFVDSTYKVYVGNLAKTVTSEMLKKNFSEKGQVLSAKVSRVPGTSKSSGFGFVTFSSKEDAEAAISSLNNSLLEGQRIRVNNA 760 TVE+A +E LNG + GR++ VN A S +A +F S +VYVGNL V + L++ FSE G+V+SA+V T +S GFGFVT SS+ + AI++L+ L+G+ +RVN A Sbjct: 105 TVEEAEKAVELLNGYDMDGRQLTVN-----KAAPRGSPERAPRGDFEPSC-RVYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETGRSRGFGFVTMSSESEVNDAIAALDGQTLDGRAVRVNVA 225
BLAST of DY257118 vs. ExPASy Swiss-Prot
Match: ROC2_NICSY (29 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 3.911e-14 Identity = 54/147 (36.73%), Postives = 74/147 (50.34%), Query Frame = 2 Query: 380 TVEDANAVIEKLNGTEFGGREIKVNITEKPLAQVDLSLLQAEDSNF--------------------VDSTYKVYVGNLAKTVTSEMLKKNFSEKGQVLSAKVSRVPGTSKSSGFGFVTFSSKEDAEAAISSLNNSLLEGQRIRVNNA 760 T E+ A ++ NG E GR I+VN P + + S N VDS+ +VYVGNL+ V LK+ FSE+G V+ AKV + +S GFGFVT+SS ++ AI SLN L+G+ IRV+ A Sbjct: 137 TKEEVEAAEQQFNGYEIDGRAIRVNAGPAPAKRENSSFGGGRGGNSSYGGGRDGNSSFGGARGGRSVDSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSSKEVNDAIDSLNGVDLDGRSIRVSAA 283
BLAST of DY257118 vs. ExPASy Swiss-Prot
Match: ROC2_NICPL (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 5.108e-14 Identity = 54/147 (36.73%), Postives = 74/147 (50.34%), Query Frame = 2 Query: 380 TVEDANAVIEKLNGTEFGGREIKVNITEKPLAQVDLSLLQAEDSNF--------------------VDSTYKVYVGNLAKTVTSEMLKKNFSEKGQVLSAKVSRVPGTSKSSGFGFVTFSSKEDAEAAISSLNNSLLEGQRIRVNNA 760 T E+ A ++ NG E GR I+VN P + + S N VDS+ +VYVGNL+ V LK+ FSE+G V+ AKV + +S GFGFVT+SS ++ AI SLN L+G+ IRV+ A Sbjct: 138 TKEEVEAAEQQFNGYEIDGRAIRVNAGPAPAKRENSSFGGGRGGNSSYGGGRDGNSSFGGARGGRSVDSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSAKEVNDAIDSLNGIDLDGRSIRVSAA 284
BLAST of DY257118 vs. ExPASy Swiss-Prot
Match: TIA1_MOUSE (Nucleolysin TIA-1 OS=Mus musculus GN=Tia1 PE=1 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 9.634e-13 Identity = 43/122 (35.25%), Postives = 68/122 (55.74%), Query Frame = 2 Query: 392 ANAVIEKLNGTEFGGREIKVNITEKPLAQV-DLSLLQAEDSNFVDSTYKVYVGNLAKTVTSEMLKKNFSEKGQVLSAKVSRVPGTSKSSGFGFVTFSSKEDAEAAISSLNNSLLEGQRIRVN 754 A A + +NG + G+E+KVN P +Q D S + + V+VG+L+ +T+E +K F+ G++ A+V + T KS G+GFV+F +K DAE AI + L G++IR N Sbjct: 59 AAAALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTN 180
BLAST of DY257118 vs. ExPASy Swiss-Prot
Match: TIA1_HUMAN (Nucleolysin TIA-1 isoform p40 OS=Homo sapiens GN=TIA1 PE=1 SV=3) HSP 1 Score: 75.0998 bits (183), Expect = 9.634e-13 Identity = 43/122 (35.25%), Postives = 68/122 (55.74%), Query Frame = 2 Query: 392 ANAVIEKLNGTEFGGREIKVNITEKPLAQV-DLSLLQAEDSNFVDSTYKVYVGNLAKTVTSEMLKKNFSEKGQVLSAKVSRVPGTSKSSGFGFVTFSSKEDAEAAISSLNNSLLEGQRIRVN 754 A A + +NG + G+E+KVN P +Q D S + + V+VG+L+ +T+E +K F+ G++ A+V + T KS G+GFV+F +K DAE AI + L G++IR N Sbjct: 59 AAAALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTN 180
BLAST of DY257118 vs. ExPASy Swiss-Prot
Match: TIAR_MOUSE (Nucleolysin TIAR OS=Mus musculus GN=Tial1 PE=2 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 1.258e-12 Identity = 44/122 (36.07%), Postives = 70/122 (57.38%), Query Frame = 2 Query: 389 DANAVIEKLNGTEFGGREIKVNITEKPLAQVDLSLLQAEDSNFVDSTYKVYVGNLAKTVTSEMLKKNFSEKGQVLSAKVSRVPGTSKSSGFGFVTFSSKEDAEAAISSLNNSLLEGQRIRVN 754 DA A + +NG + G+E+KVN P +Q + + SN + V+VG+L+ +T+E +K F+ G++ A+V + T KS G+GFV+F +K DAE AI + L G++IR N Sbjct: 77 DAAAALAAMNGRKILGKEVKVNWATTPSSQ------KKDTSNH----FHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTN 188 The following BLAST results are available for this feature:
BLAST of DY257118 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 16
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Sequences
The
following sequences are available for this feature:
EST sequence >DY257118 ID=DY257118; Name=DY257118; organism=Citrus sinensis; type=EST; length=1244bpback to top |