DY257118

Overview
NameDY257118
Unique NameDY257118
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1244
Libraries
Library NameType
AbsCFruitcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY257118 vs. ExPASy Swiss-Prot
Match: RRP2_SPIOL (30S ribosomal protein 2, chloroplastic OS=Spinacia oleracea GN=PSRP2 PE=1 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 9.223e-48
Identity = 96/128 (75.00%), Postives = 112/128 (87.50%), Query Frame = 2
Query:  377 KTVEDANAVIEKLNGTEFGGREIKVNITEKPLAQVDLSLLQAEDSNFVDSTYKVYVGNLAKTVTSEMLKKNFSEKGQVLSAKVSRVPGTSKSSGFGFVTFSSKEDAEAAISSLNNSLLEGQRIRVNNA 760
            KTVEDANAVIEKLN TE GGR+IKVNITEKPL  +D++  QAEDS FV+S YKVY+GNLAKTVT+E+LK  FSEKG+VL AKV R PGTSKS+GFGFV+FSS+E+ EAAI +LNNS+LEGQ+IRVN A
Sbjct:  133 KTVEDANAVIEKLNDTEIGGRKIKVNITEKPLEGMDIATTQAEDSQFVESPYKVYIGNLAKTVTNELLKDFFSEKGKVLGAKVQRTPGTSKSNGFGFVSFSSEEEVEAAIQALNNSVLEGQKIRVNKA 260          
BLAST of DY257118 vs. ExPASy Swiss-Prot
Match: ROC5_NICSY (33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 6.447e-17
Identity = 49/130 (37.69%), Postives = 80/130 (61.54%), Query Frame = 2
Query:  380 TVEDANAVIEKLNGTEFGGREIKVNITEKPLA---QVDLSLLQAEDSNFVDSTYKVYVGNLAKTVTSEMLKKNFSEKGQVLSAKVSRVPGTSKSSGFGFVTFSSKEDAEAAISSLNNSLLEGQRIRVNNA 760
            +VE+A   I   +G++ GGR +KVN  E P     +V  + +++    FVDS +K+YV NL+  +TS+ L+  F+++   +SAKV     + +S GFGF+TFSS E   +A+ ++N   LEG+ +R+N A
Sbjct:  164 SVEEAKEAIRLFDGSQVGGRTVKVNFPEVPRGGEREVMSAKIRSTYQGFVDSPHKLYVANLSWALTSQGLRDAFADQPGFMSAKVIYDRSSGRSRGFGFITFSSAEAMNSALDTMNEVELEGRPLRLNVA 293          
BLAST of DY257118 vs. ExPASy Swiss-Prot
Match: ROC1_NICPL (30 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.029e-14
Identity = 53/134 (39.55%), Postives = 76/134 (56.72%), Query Frame = 2
Query:  386 EDANAVIEKLNGTEFGGREIKVNITEKPLAQVDLSLLQAEDSNF---------VDSTYKVYVGNLAKTVTSEMLKKNFSEKGQVLSAKVSRVPGTSKSSGFGFVTFSSKEDAEAAISSLNNSLLEGQRIRVNNA 760
            E+  A  ++ NG E  GR ++VN    P  + + S    E+S+F          DS+ +VYVGNLA  V  + L+  FSE+G+V+ AKV     + +S GFGFVT+SS E+   AI SL+   L G+ IRV+ A
Sbjct:  139 EEVEAACQQFNGYELDGRALRVNSGPPPEKRENSSF--RENSSFRGGSRGGGSFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVSPA 270          
BLAST of DY257118 vs. ExPASy Swiss-Prot
Match: ROC1_NICSY (29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.344e-14
Identity = 50/126 (39.68%), Postives = 72/126 (57.14%), Query Frame = 2
Query:  386 EDANAVIEKLNGTEFGGREIKVNITEKPLAQVDLSLLQ-AEDSNFVDSTYKVYVGNLAKTVTSEMLKKNFSEKGQVLSAKVSRVPGTSKSSGFGFVTFSSKEDAEAAISSLNNSLLEGQRIRVNNA 760
            E+  A  ++ NG E  GR ++VN    P  + + S    +      DS+ +VYVGNLA  V  + L+  FSE+G+V+ AKV     + +S GFGFVT+SS E+   AI SL+   L G+ IRV+ A
Sbjct:  139 EEVEAACQQFNGYELDGRALRVNSGPPPEKRENSSFRGGSRGGGSFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVSPA 264          
BLAST of DY257118 vs. ExPASy Swiss-Prot
Match: ROC1_SPIOL (28 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.293e-14
Identity = 52/127 (40.94%), Postives = 75/127 (59.06%), Query Frame = 2
Query:  380 TVEDANAVIEKLNGTEFGGREIKVNITEKPLAQVDLSLLQAEDSNFVDSTYKVYVGNLAKTVTSEMLKKNFSEKGQVLSAKVSRVPGTSKSSGFGFVTFSSKEDAEAAISSLNNSLLEGQRIRVNNA 760
            TVE+A   +E LNG +  GR++ VN      A    S  +A   +F  S  +VYVGNL   V +  L++ FSE G+V+SA+V     T +S GFGFVT SS+ +   AI++L+   L+G+ +RVN A
Sbjct:  105 TVEEAEKAVELLNGYDMDGRQLTVN-----KAAPRGSPERAPRGDFEPSC-RVYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETGRSRGFGFVTMSSESEVNDAIAALDGQTLDGRAVRVNVA 225          
BLAST of DY257118 vs. ExPASy Swiss-Prot
Match: ROC2_NICSY (29 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 3.911e-14
Identity = 54/147 (36.73%), Postives = 74/147 (50.34%), Query Frame = 2
Query:  380 TVEDANAVIEKLNGTEFGGREIKVNITEKPLAQVDLSLLQAEDSNF--------------------VDSTYKVYVGNLAKTVTSEMLKKNFSEKGQVLSAKVSRVPGTSKSSGFGFVTFSSKEDAEAAISSLNNSLLEGQRIRVNNA 760
            T E+  A  ++ NG E  GR I+VN    P  + + S       N                     VDS+ +VYVGNL+  V    LK+ FSE+G V+ AKV     + +S GFGFVT+SS ++   AI SLN   L+G+ IRV+ A
Sbjct:  137 TKEEVEAAEQQFNGYEIDGRAIRVNAGPAPAKRENSSFGGGRGGNSSYGGGRDGNSSFGGARGGRSVDSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSSKEVNDAIDSLNGVDLDGRSIRVSAA 283          
BLAST of DY257118 vs. ExPASy Swiss-Prot
Match: ROC2_NICPL (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 5.108e-14
Identity = 54/147 (36.73%), Postives = 74/147 (50.34%), Query Frame = 2
Query:  380 TVEDANAVIEKLNGTEFGGREIKVNITEKPLAQVDLSLLQAEDSNF--------------------VDSTYKVYVGNLAKTVTSEMLKKNFSEKGQVLSAKVSRVPGTSKSSGFGFVTFSSKEDAEAAISSLNNSLLEGQRIRVNNA 760
            T E+  A  ++ NG E  GR I+VN    P  + + S       N                     VDS+ +VYVGNL+  V    LK+ FSE+G V+ AKV     + +S GFGFVT+SS ++   AI SLN   L+G+ IRV+ A
Sbjct:  138 TKEEVEAAEQQFNGYEIDGRAIRVNAGPAPAKRENSSFGGGRGGNSSYGGGRDGNSSFGGARGGRSVDSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSAKEVNDAIDSLNGIDLDGRSIRVSAA 284          
BLAST of DY257118 vs. ExPASy Swiss-Prot
Match: TIA1_MOUSE (Nucleolysin TIA-1 OS=Mus musculus GN=Tia1 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 9.634e-13
Identity = 43/122 (35.25%), Postives = 68/122 (55.74%), Query Frame = 2
Query:  392 ANAVIEKLNGTEFGGREIKVNITEKPLAQV-DLSLLQAEDSNFVDSTYKVYVGNLAKTVTSEMLKKNFSEKGQVLSAKVSRVPGTSKSSGFGFVTFSSKEDAEAAISSLNNSLLEGQRIRVN 754
            A A +  +NG +  G+E+KVN    P +Q  D S      +      + V+VG+L+  +T+E +K  F+  G++  A+V +   T KS G+GFV+F +K DAE AI  +    L G++IR N
Sbjct:   59 AAAALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTN 180          
BLAST of DY257118 vs. ExPASy Swiss-Prot
Match: TIA1_HUMAN (Nucleolysin TIA-1 isoform p40 OS=Homo sapiens GN=TIA1 PE=1 SV=3)

HSP 1 Score: 75.0998 bits (183), Expect = 9.634e-13
Identity = 43/122 (35.25%), Postives = 68/122 (55.74%), Query Frame = 2
Query:  392 ANAVIEKLNGTEFGGREIKVNITEKPLAQV-DLSLLQAEDSNFVDSTYKVYVGNLAKTVTSEMLKKNFSEKGQVLSAKVSRVPGTSKSSGFGFVTFSSKEDAEAAISSLNNSLLEGQRIRVN 754
            A A +  +NG +  G+E+KVN    P +Q  D S      +      + V+VG+L+  +T+E +K  F+  G++  A+V +   T KS G+GFV+F +K DAE AI  +    L G++IR N
Sbjct:   59 AAAALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTN 180          
BLAST of DY257118 vs. ExPASy Swiss-Prot
Match: TIAR_MOUSE (Nucleolysin TIAR OS=Mus musculus GN=Tial1 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.258e-12
Identity = 44/122 (36.07%), Postives = 70/122 (57.38%), Query Frame = 2
Query:  389 DANAVIEKLNGTEFGGREIKVNITEKPLAQVDLSLLQAEDSNFVDSTYKVYVGNLAKTVTSEMLKKNFSEKGQVLSAKVSRVPGTSKSSGFGFVTFSSKEDAEAAISSLNNSLLEGQRIRVN 754
            DA A +  +NG +  G+E+KVN    P +Q      + + SN     + V+VG+L+  +T+E +K  F+  G++  A+V +   T KS G+GFV+F +K DAE AI  +    L G++IR N
Sbjct:   77 DAAAALAAMNGRKILGKEVKVNWATTPSSQ------KKDTSNH----FHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTN 188          
The following BLAST results are available for this feature:
BLAST of DY257118 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
RRP2_SPIOL9.223e-4875.0030S ribosomal protein 2, chloroplastic OS=Spinacia... [more]
ROC5_NICSY6.447e-1737.6933 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
ROC1_NICPL1.029e-1439.5530 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
ROC1_NICSY1.344e-1439.6829 kDa ribonucleoprotein A, chloroplastic OS=Nicot... [more]
ROC1_SPIOL2.293e-1440.9428 kDa ribonucleoprotein, chloroplastic OS=Spinaci... [more]
ROC2_NICSY3.911e-1436.7329 kDa ribonucleoprotein B, chloroplastic OS=Nicot... [more]
ROC2_NICPL5.108e-1436.7331 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
TIA1_MOUSE9.634e-1335.25Nucleolysin TIA-1 OS=Mus musculus GN=Tia1 PE=1 SV=... [more]
TIA1_HUMAN9.634e-1335.25Nucleolysin TIA-1 isoform p40 OS=Homo sapiens GN=T... [more]
TIAR_MOUSE1.258e-1236.07Nucleolysin TIAR OS=Mus musculus GN=Tial1 PE=2 SV=... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAK1AD04FM2 AbsCFruit Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257118 ID=DY257118; Name=DY257118; organism=Citrus sinensis; type=EST; length=1244bp
CCATACAATAATCGAAATACAGATGGGCGTCACAGGTGTCCAAGAGAAAA
GATACAAACTCATGGACTAAAAATTGCTTCAACGGATTCTGAAGTTCGTC
GCTTTATAACTCGATGCGACTCAACATTTGGATGGATTGAATCGCAATTC
ATTACTCAACTGTGTCATTCATTGTTACCAATGTTAATGCTAATAACCAA
AATTTTATGAAGTTGTGGGGCAAAAGCCAAGTGCTCCTCTTACTATAAAA
AAAAAAAAAAAAAAAGAAAAAAAATAAAAAAAAAGAAAAAAAACACAGAA
AAAAAAAAAAAAAATGAAGAAATTAAAGAAAAAAAAAAATGAAAAAAATC
AAACAAATTTGCCTTTGTAACAATAGAAAACTGTTGAGGATGCAAATGCA
GTGATTGAGAAACTGAACGGCACTGAATTTGGTGGACGTGAGATCAAAGT
AAACATCACAGAGAAACCTTTGGCGCAAGTTGATTTGTCCCTCCTCCAAG
CAGAGGATTCTAACTTTGTGGACAGTACGTATAAAGTTTATGTAGGAAAT
CTTGCAAAGACAGTGACCTCGGAAATGCTCAAAAAAAATTTCTCTGAGAA
GGGACAGGTTCTTAGTGCAAAGGTTTCGCGGGTTCCAGGAACATCAAAAT
CATCTGGTTTTGGGTTTGTTACCTTCTCTTCAAAAGAGGATGCAGAAGCT
GCCATCTCTTCTCTTAACAATTCTCTGCTGGAAGGGCAACGAATTCGTGT
AAACAACGCATAGTATGTGACCCGCGGCAGTTTCTCTGGGATTCTGGAGA
GTGTTCTACTTGAAGCAACCATTTGATTTCACATGGAAAAAACAGGAATT
AGTAAAAAATGGACTTCTCTTTTTTAATTTGTTAGGATGGGAAAGCTTGT
TGGTTCTTCTTCAAGGGTATTTAAAGCGTTCAACTTCCACTTATTGGAAT
TCAAGCACTATGGTTTGACAAGGAATCACTTTTTTTGGTTTTATATTTGT
TGAATAGCCCAAAAAACAAGGGCTCGGCCCCCCCCGGAAATGCCAAAAAA
TCAATACTGCAATTTTTTTCACCAACCCCCGGCGGGAAGTTTTTTTACAT
CACACAAAAAAAATATATTTTCCCCCCCGGATTTTTTTTTTATTATATTA
TGGGAGAAGAAGTTAGCAAATGGGGGTTTTGTGCGGAGAGGAAGAGGTGT
GGGGGGGAGGGAAAAAAGAAAAGAAGGTAATAAAAATTAGACAG
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