DY257116

Overview
NameDY257116
Unique NameDY257116
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length809
Libraries
Library NameType
AbsCFruitcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY257116 vs. ExPASy Swiss-Prot
Match: CNGC1_ARATH (Cyclic nucleotide-gated ion channel 1 OS=Arabidopsis thaliana GN=CNGC1 PE=1 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 3.113e-26
Identity = 64/175 (36.57%), Postives = 101/175 (57.71%), Query Frame = 2
Query:    2 LQQKVKKYKSYIRRKTDYIDVQXXXXXXXXXXXXXXXXXXCWNLLKKVQEFRKLNEVTLDALCDCVKPTFFTEHTHLIREGDPIDEMIFLVQGKLRTYTFKDIQSGSTSSDHKRYDGKNTRKEDLLQDGDFYGEELIDWALRDRFSFDISKSNRTIQALTNVDAFMLMADDLKIV 526
            L++++++Y+ Y  ++T  +D +                  C  LL +V  F K++E  LDALCD ++P  +TE ++++REGDP+DEM+F+++GKL T T    ++G  +S++             L  GDF GEEL+ WAL    S ++  S RT++AL  V+AF L ADDLK V
Sbjct:  437 LRKRIRRYEQYKWQETRGVDEENLLSNLPKDLRRDIKRHLCLALLMRVPMFEKMDEQLLDALCDRLQPVLYTEESYIVREGDPVDEMLFIMRGKLLTITTNGGRTGFLNSEY-------------LGAGDFCGEELLTWALDPHSSSNLPISTRTVRALMEVEAFALKADDLKFV 598          
BLAST of DY257116 vs. ExPASy Swiss-Prot
Match: CNGC7_ARATH (Putative cyclic nucleotide-gated ion channel 7 OS=Arabidopsis thaliana GN=CNGC7 PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.545e-25
Identity = 61/175 (34.86%), Postives = 102/175 (58.29%), Query Frame = 2
Query:    2 LQQKVKKYKSYIRRKTDYIDVQXXXXXXXXXXXXXXXXXXCWNLLKKVQEFRKLNEVTLDALCDCVKPTFFTEHTHLIREGDPIDEMIFLVQGKLRTYTFKDIQSGSTSSDHKRYDGKNTRKEDLLQDGDFYGEELIDWALRDRFSFDISKSNRTIQALTNVDAFMLMADDLKIV 526
            L+++V++Y  Y   +T  +D +                  C NL+++V  F  ++E  LDA+C+ +KP+ FTE T+++REGDP++EM+F+++G+L + T    +SG  +               LL++GDF GEEL+ WAL  +   ++  S RT++ALT V+AF L A++LK V
Sbjct:  453 LRERVRRYDQYKWLETRGVDEENIVQSLPKDLRRDIKRHLCLNLVRRVPLFANMDERLLDAICERLKPSLFTESTYIVREGDPVNEMMFIIRGRLESVTTDGGRSGFFN-------------RGLLKEGDFCGEELLTWALDPKAGSNLPSSTRTVKALTEVEAFALEAEELKFV 614          
BLAST of DY257116 vs. ExPASy Swiss-Prot
Match: CNGC8_ARATH (Putative cyclic nucleotide-gated ion channel 8 OS=Arabidopsis thaliana GN=CNGC8 PE=2 SV=2)

HSP 1 Score: 115.931 bits (289), Expect = 2.635e-25
Identity = 60/175 (34.29%), Postives = 102/175 (58.29%), Query Frame = 2
Query:    2 LQQKVKKYKSYIRRKTDYIDVQXXXXXXXXXXXXXXXXXXCWNLLKKVQEFRKLNEVTLDALCDCVKPTFFTEHTHLIREGDPIDEMIFLVQGKLRTYTFKDIQSGSTSSDHKRYDGKNTRKEDLLQDGDFYGEELIDWALRDRFSFDISKSNRTIQALTNVDAFMLMADDLKIV 526
            L+++V++Y  Y   +T  +D +                  C NL+++V  F  ++E  LDA+C+ +KP+ +TE T+++REGDP++EM+F+++G+L + T    +SG  +               LL++GDF GEEL+ WAL  +   ++  S RT++ALT V+AF L A++LK V
Sbjct:  459 LRERVRRYDQYKWLETRGVDEENIVQSLPKDLRRDIKRHLCLNLVRRVPLFANMDERLLDAICERLKPSLYTESTYIVREGDPVNEMLFIIRGRLESVTTDGGRSGFFN-------------RGLLKEGDFCGEELLTWALDPKAGSNLPSSTRTVKALTEVEAFALEAEELKFV 620          
BLAST of DY257116 vs. ExPASy Swiss-Prot
Match: CNGC6_ARATH (Probable cyclic nucleotide-gated ion channel 6 OS=Arabidopsis thaliana GN=CNGC6 PE=1 SV=2)

HSP 1 Score: 115.161 bits (287), Expect = 4.495e-25
Identity = 61/175 (34.86%), Postives = 101/175 (57.71%), Query Frame = 2
Query:    2 LQQKVKKYKSYIRRKTDYIDVQXXXXXXXXXXXXXXXXXXCWNLLKKVQEFRKLNEVTLDALCDCVKPTFFTEHTHLIREGDPIDEMIFLVQGKLRTYTFKDIQSGSTSSDHKRYDGKNTRKEDLLQDGDFYGEELIDWALRDRFSFDISKSNRTIQALTNVDAFMLMADDLKIV 526
            L+++V++Y  Y   +T  +D +                  C  L+++V  F  ++E  LDA+C+ +KP  FTE ++L+REGDP++EM+F+++G+L + T      G  S  + R          LL++GDF G+EL+ WAL  +   ++  S RT++ALT V+AF L+AD+LK V
Sbjct:  465 LRERVRRYDQYKWLETRGVDEENLVQNLPKDLRRDIKRHLCLALVRRVPLFENMDERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGRLESVT----TDGGRSGFYNR---------SLLKEGDFCGDELLTWALDPKSGSNLPSSTRTVKALTEVEAFALIADELKFV 626          
BLAST of DY257116 vs. ExPASy Swiss-Prot
Match: CNGC9_ARATH (Putative cyclic nucleotide-gated ion channel 9 OS=Arabidopsis thaliana GN=CNGC9 PE=1 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.708e-24
Identity = 60/175 (34.29%), Postives = 100/175 (57.14%), Query Frame = 2
Query:    2 LQQKVKKYKSYIRRKTDYIDVQXXXXXXXXXXXXXXXXXXCWNLLKKVQEFRKLNEVTLDALCDCVKPTFFTEHTHLIREGDPIDEMIFLVQGKLRTYTFKDIQSGSTSSDHKRYDGKNTRKEDLLQDGDFYGEELIDWALRDRFSFDISKSNRTIQALTNVDAFMLMADDLKIV 526
            L+++V++Y  Y   +T  +D +                  C  L+++V  F  ++E  LDA+C+ +KP  +TE ++L+REGDP++EM+F+++G+L + T    +SG  +               LL++GDF GEEL+ WAL  +   ++  S RT +ALT V+AF L+AD+LK V
Sbjct:  464 LRERVRRYDQYKWLETRGVDEENLVQNLPKDLRRDIKRHLCLALVRRVPLFENMDERLLDAICERLKPCLYTESSYLVREGDPVNEMLFIIRGRLESVTTDGGRSGFFN-------------RSLLKEGDFCGEELLTWALDPKSGSNLPSSTRTAKALTEVEAFALIADELKFV 625          
BLAST of DY257116 vs. ExPASy Swiss-Prot
Match: CNG13_ARATH (Putative cyclic nucleotide-gated ion channel 13 OS=Arabidopsis thaliana GN=CNGC13 PE=2 SV=2)

HSP 1 Score: 113.235 bits (282), Expect = 1.708e-24
Identity = 62/175 (35.43%), Postives = 102/175 (58.29%), Query Frame = 2
Query:    2 LQQKVKKYKSYIRRKTDYIDVQXXXXXXXXXXXXXXXXXXCWNLLKKVQEFRKLNEVTLDALCDCVKPTFFTEHTHLIREGDPIDEMIFLVQGKLRTYTFKDIQSGSTSSDHKRYDGKNTRKEDLLQDGDFYGEELIDWALRDRFSFDISKSNRTIQALTNVDAFMLMADDLKIV 526
            L++++++Y+ Y  ++T  ++ +                  C +LLKKV  F  ++E  LDA+CD +KP  +TE+++ IREGDP++EM+F+++GKL + T    ++G  ++ +             L+  DF GE+L+ WAL  + S     S RT+QALT V+AF L ADDLK+V
Sbjct:  425 LRKRIRRYEQYKWQETRGVEEENLLRNLPKDLRRDIKRHFCLDLLKKVPLFEIMDEQLLDAVCDKLKPVLYTENSYAIREGDPVEEMLFVMRGKLMSATTNGGRTGFFNAVY-------------LKPSDFCGEDLLTWALDPQSSSHFPISTRTVQALTEVEAFALAADDLKLV 586          
BLAST of DY257116 vs. ExPASy Swiss-Prot
Match: CNGC5_ARATH (Probable cyclic nucleotide-gated ion channel 5 OS=Arabidopsis thaliana GN=CNGC5 PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.231e-24
Identity = 59/175 (33.71%), Postives = 100/175 (57.14%), Query Frame = 2
Query:    2 LQQKVKKYKSYIRRKTDYIDVQXXXXXXXXXXXXXXXXXXCWNLLKKVQEFRKLNEVTLDALCDCVKPTFFTEHTHLIREGDPIDEMIFLVQGKLRTYTFKDIQSGSTSSDHKRYDGKNTRKEDLLQDGDFYGEELIDWALRDRFSFDISKSNRTIQALTNVDAFMLMADDLKIV 526
            L+++V++Y  Y   +T  +D +                  C  L+++V  F+ +++  LDA+C  +KP  FTE T+L+REGDP+DEM+F+++G+L + T    +SG  +               LL++G+F GEEL+ WAL  +   ++  S RT++ALT V+AF L +++LK V
Sbjct:  449 LRERVRRYDQYKWLETRGVDEEYLVQNLPKDLRRDIKRHLCLALVRRVPLFKSMDDKLLDAICMRLKPCLFTESTYLVREGDPVDEMLFIIRGRLESVTTDGGRSGFFN-------------RSLLKEGEFCGEELLTWALDPKSGVNLPSSTRTVKALTEVEAFALTSEELKFV 610          
BLAST of DY257116 vs. ExPASy Swiss-Prot
Match: CNG10_ARATH (Probable cyclic nucleotide-gated ion channel 10 OS=Arabidopsis thaliana GN=CNGC10 PE=2 SV=2)

HSP 1 Score: 107.071 bits (266), Expect = 1.224e-22
Identity = 60/175 (34.29%), Postives = 101/175 (57.71%), Query Frame = 2
Query:    2 LQQKVKKYKSYIRRKTDYIDVQXXXXXXXXXXXXXXXXXXCWNLLKKVQEFRKLNEVTLDALCDCVKPTFFTEHTHLIREGDPIDEMIFLVQGKLRTYTFKDIQSGSTSSDHKRYDGKNTRKEDLLQDGDFYGEELIDWALRDRFSFDISKSNRTIQALTNVDAFMLMADDLKIV 526
            L++++++Y+ Y  ++T  ++ +                  C +LLKKV  F  ++E  LDA+CD ++P  +TE++++IREGDP+ EM+F+++G+L + T    +SG  ++ +             L+  DF GE+L+ WAL  + S     S RT+QALT V+AF L A+DLK V
Sbjct:  424 LRKRIRRYEQYRWQETRGVEEETLLRNLPKDLRRDIKRHLCLDLLKKVPLFEIMDEQLLDAVCDRLRPVLYTENSYVIREGDPVGEMLFVMRGRLVSATTNGGRSGFFNAVN-------------LKASDFCGEDLLPWALDPQSSSHFPISTRTVQALTEVEAFALTAEDLKSV 585          
BLAST of DY257116 vs. ExPASy Swiss-Prot
Match: CNG15_ARATH (Putative cyclic nucleotide-gated ion channel 15 OS=Arabidopsis thaliana GN=CNGC15 PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.088e-22
Identity = 61/175 (34.86%), Postives = 96/175 (54.86%), Query Frame = 2
Query:    2 LQQKVKKYKSYIRRKTDYIDVQXXXXXXXXXXXXXXXXXXCWNLLKKVQEFRKLNEVTLDALCDCVKPTFFTEHTHLIREGDPIDEMIFLVQGKLRTYTFKDIQSGSTSSDHKRYDGKNTRKEDLLQDGDFYGEELIDWALRDRFSFDISKSNRTIQALTNVDAFMLMADDLKIV 526
            L+Q V+KY  Y    T  +D +                  C++L+++V  F +++E  LDA+C+ +KP   TE T L+REGDP++EM+F+++G L +YT    ++G  +S              L+  GDF GEEL+ WAL  R    +  S RT++A+  V+AF L A+DL+ V
Sbjct:  422 LRQAVRKYDQYKWLATRGVDEEALLISLPLDLRRDIKRHLCFDLVRRVPLFDQMDERMLDAICERLKPALCTEGTFLVREGDPVNEMLFIIRGHLDSYTTNGGRTGFFNS-------------CLIGPGDFCGEELLTWALDPRPVVILPSSTRTVKAICEVEAFALKAEDLQFV 583          
BLAST of DY257116 vs. ExPASy Swiss-Prot
Match: CNG18_ARATH (Putative cyclic nucleotide-gated ion channel 18 OS=Arabidopsis thaliana GN=CNGC18 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.036e-21
Identity = 55/177 (31.07%), Postives = 97/177 (54.80%), Query Frame = 2
Query:    2 LQQKVKKYKSYIRRKTDYIDVQXXXXXXXXXXXXXXXXXXCWNLLKKVQEFRKLNEVTLDALCDCVKPTFFTEHTHLIREGDPIDEMIFLVQGKLRTYTFKDIQSGSTSSDHKRYDGKNTRKEDLLQDGDFYGEELIDWALRDRFSFDISKSNRTIQALTNVDAFMLMADDLKIVVH 532
            LQ++V+++  Y    T  +D +                  C +L+++V  F ++++  LDA+C C+  +  T  T++ REGDP++EM+F+++G++ + T    +SG  +S               L+ GDF GEEL+ WAL    + ++  S R+++AL+ V+AF L A+DLK V H
Sbjct:  400 LQERVRRFVQYKWLATRGVDEESILHSLPTDLRREIQRHLCLSLVRRVPFFSQMDDQLLDAICGCLVSSLSTAGTYIFREGDPVNEMLFVIRGQIESSTTNGGRSGFFNS-------------TTLRPGDFCGEELLTWALMPNSTLNLPSSTRSVRALSEVEAFALSAEDLKFVAH 563          
The following BLAST results are available for this feature:
BLAST of DY257116 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
CNGC1_ARATH3.113e-2636.57Cyclic nucleotide-gated ion channel 1 OS=Arabidops... [more]
CNGC7_ARATH1.545e-2534.86Putative cyclic nucleotide-gated ion channel 7 OS=... [more]
CNGC8_ARATH2.635e-2534.29Putative cyclic nucleotide-gated ion channel 8 OS=... [more]
CNGC6_ARATH4.495e-2534.86Probable cyclic nucleotide-gated ion channel 6 OS=... [more]
CNGC9_ARATH1.708e-2434.29Putative cyclic nucleotide-gated ion channel 9 OS=... [more]
CNG13_ARATH1.708e-2435.43Putative cyclic nucleotide-gated ion channel 13 OS... [more]
CNGC5_ARATH2.231e-2433.71Probable cyclic nucleotide-gated ion channel 5 OS=... [more]
CNG10_ARATH1.224e-2234.29Probable cyclic nucleotide-gated ion channel 10 OS... [more]
CNG15_ARATH2.088e-2234.86Putative cyclic nucleotide-gated ion channel 15 OS... [more]
CNG18_ARATH1.036e-2131.07Putative cyclic nucleotide-gated ion channel 18 OS... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAK1AD01FM2 AbsCFruit Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257116 ID=DY257116; Name=DY257116; organism=Citrus sinensis; type=EST; length=809bp
TCTCCAGCAAAAGGTGAAGAAATATAAGTCGTACATACGGCGAAAAACTG
ATTACATTGATGTACAAAATCTACTCAATAATCTTCCCAATGAACTCAGA
AGAGAACTAAAGCGCGAACTTTGCTGGAATCTGCTAAAGAAAGTACAAGA
GTTCAGGAAGCTAAATGAGGTAACATTGGATGCTCTATGCGATTGCGTAA
AACCAACTTTCTTCACCGAGCACACTCACTTAATTCGTGAAGGAGACCCA
ATTGACGAGATGATCTTTTTAGTGCAAGGCAAACTGCGCACCTACACCTT
TAAGGATATACAAAGTGGCTCAACAAGCTCTGATCATAAAAGATATGATG
GCAAAAACACAAGGAAAGAAGATCTTCTGCAAGATGGCGACTTCTATGGA
GAAGAACTTATTGACTGGGCTTTGAGAGACCGCTTCTCATTTGACATCTC
TAAGTCAAACAGAACCATTCAAGCACTTACAAATGTTGATGCCTTTATGC
TTATGGCTGATGACTTGAAAATTGTAGTCCATGACATGATGAATCAGTTA
TGTCTCTACGACTAAAGTCTCTACCACAAACAAGAACTCCCTGAACTCTA
CCCAGGAAATTGATGGGGACTTGCCACCTGAGGTTTATCCCCTCTTCACC
AACTAAATCCTTTTAAGAAATAAAAACTTTTAATTATCAAAACTTGGAAT
TTTCCTACTTTTCCGTAGGAAAATCCAAGTTTCCCAAGGCCCACAAAATA
ATCCTTGGAAAGGCCAAACATATCCCCAATGGTAATTGGAAAATGAATTA
ACCCCTAAC
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