DT214600

Overview
NameDT214600
Unique NameDT214600
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length788
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3448 contig Csv1_Contig3448:1205..1992. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DT214600 vs. ExPASy Swiss-Prot
Match: ERG1_PANGI (Squalene monooxygenase OS=Panax ginseng PE=2 SV=1)

HSP 1 Score: 317.005 bits (811), Expect = 7.435e-86
Identity = 151/184 (82.07%), Postives = 173/184 (94.02%), Query Frame = -3
Query:  235 GALLMGDAFNMRHPLTGGGMTVALSDIVVLRNLLKPLHDFNDAASLGRYLESFYTLRKPVASTINTLAGALYKVFSSSPDQARKEMRQACFDYLSLGGVFSTGPVALLSGLNPRPLSLVLHFFAVAIYGVGRLLLPFPSPKRMWIGARLISGASGIIFPIIKAEGVRQMFFPATIPAVYRAPPV 786
            GALL+GDAFNMRHPLTGGGMTVALSDIV++R+LL+PL D +D+++L +YLESFYTLRKPVASTINTLAGALYKVF +SPD+AR+EMR ACFDYLSLGG+ S GP+ALLSGLNPRP+SL LHFFAVAIYGVGRLL+PFPSPKRMW+GARLI GASGIIFPIIK+EG+RQMFFPA +PA YRAPP+
Sbjct:  355 GALLLGDAFNMRHPLTGGGMTVALSDIVLIRDLLRPLRDLHDSSTLCKYLESFYTLRKPVASTINTLAGALYKVFCASPDKARQEMRNACFDYLSLGGICSQGPIALLSGLNPRPISLFLHFFAVAIYGVGRLLIPFPSPKRMWLGARLILGASGIIFPIIKSEGLRQMFFPAIVPAYYRAPPI 538          
BLAST of DT214600 vs. ExPASy Swiss-Prot
Match: ERG11_ARATH (Squalene monooxygenase 1,1 OS=Arabidopsis thaliana GN=SQP1,1 PE=2 SV=2)

HSP 1 Score: 186.422 bits (472), Expect = 1.516e-46
Identity = 87/177 (49.15%), Postives = 122/177 (68.93%), Query Frame = -3
Query:  256 GALLMGDAFNMRHPLTGGGMTVALSDIVVLRNLLKPLHDFNDAASLGRYLESFYTLRKPVASTINTLAGALYKVFSSSPDQARKEMRQACFDYLSLGGVFSTGPVALLSGLNPRPLSLVLHFFAVAIYGVGRLLLPFPSPKRMWIGARLISGASGIIFPIIKAEGVRQMFFPATIPA 786
            G +L+GDAFNMRHP    GM V LSDI++LR LL+PL +  +A  + + ++SFY +RKP+++T+NTL  A  +V  +S D+A++ MRQ C+DYLS GG  ++G +ALL G+NPRP+SL+ H  A+ +  +G LL PFPSP R+W   RL   A  ++ P +KAEGV QM FP    A
Sbjct:  329 GVILLGDAFNMRHPAIASGMMVLLSDILILRRLLQPLSNLGNAQKISQVIKSFYDIRKPMSATVNTLGNAFSQVLVASTDEAKEAMRQGCYDYLSSGGFRTSGMMALLGGMNPRPISLIYHLCAITLSSIGHLLSPFPSPLRIWHSLRLFGLAMKMLVPHLKAEGVSQMLFPVNAAA 505          
BLAST of DT214600 vs. ExPASy Swiss-Prot
Match: ERG12_ARATH (Squalene monooxygenase 1,2 OS=Arabidopsis thaliana GN=SQP1,2 PE=2 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 7.521e-46
Identity = 87/181 (48.07%), Postives = 123/181 (67.96%), Query Frame = -3
Query:  244 GALLMGDAFNMRHPLTGGGMTVALSDIVVLRNLLKPLHDFNDAASLGRYLESFYTLRKPVASTINTLAGALYKVFSSSPDQARKEMRQACFDYLSLGGVFSTGPVALLSGLNPRPLSLVLHFFAVAIYGVGRLLLPFPSPKRMWIGARLISGASGIIFPIIKAEGVRQMFFPATIPAVYRA 786
            G +++GDAFNMRHP+   GM V LSDI++LR LL+PL +  DA  +   + SFY +RKP+++T+NTL  A  +V   S D+A++ MRQ  +DYL  GG  ++G +ALL G+NPRPLSLV H  A+ +  +G+LL PFPSP R+W   +L   A  ++ P +KAEGV QM FPA   A +++
Sbjct:  330 GVIVLGDAFNMRHPVVASGMMVLLSDILILRRLLQPLSNLGDANKVSEVINSFYDIRKPMSATVNTLGNAFSQVLIGSTDEAKEAMRQGVYDYLCSGGFRTSGMMALLGGMNPRPLSLVYHLCAITLSSIGQLLSPFPSPLRIWHSLKLFGLAMKMLVPNLKAEGVSQMLFPANAAAYHKS 510          
BLAST of DT214600 vs. ExPASy Swiss-Prot
Match: ERG12_BRANA (Squalene monooxygenase 1,2 OS=Brassica napus GN=SQP1,2 PE=2 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 2.858e-45
Identity = 86/180 (47.78%), Postives = 125/180 (69.44%), Query Frame = -3
Query:  247 GALLMGDAFNMRHPLTGGGMTVALSDIVVLRNLLKPLHDFNDAASLGRYLESFYTLRKPVASTINTLAGALYKVFSSSPDQARKEMRQACFDYLSLGGVFSTGPVALLSGLNPRPLSLVLHFFAVAIYGVGRLLLPFPSPKRMWIGARLISGASGIIFPIIKAEGVRQMFFPATIPAVYR 786
            G +++GDAFNMRHP+   GM V LSDI++L  LLKPL +  D   +   ++SFY LRKP+++T+NTL  + ++V  +S D+A++ MRQ CFDYLS GG  ++G +AL+ G+NPRPLSL  H F +++  +G+LL PFP+P R+W   RL+  +  ++ P +KAEG+ QM  P T  A YR
Sbjct:  331 GVIVLGDAFNMRHPVIASGMMVLLSDILILSRLLKPLGNLGDENKVSEVMKSFYALRKPMSATVNTLGNSFWQVLIASTDEAKEAMRQGCFDYLSSGGFRTSGLMALIGGMNPRPLSLFYHLFVISLSSIGQLLSPFPTPLRVWHSLRLLDLSLKMLVPHLKAEGIGQMLSP-TNAAAYR 509          
BLAST of DT214600 vs. ExPASy Swiss-Prot
Match: ERG11_BRANA (Squalene monooxygenase 1,1 OS=Brassica napus GN=SQP1,1 PE=2 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 2.958e-42
Identity = 86/180 (47.78%), Postives = 117/180 (65.00%), Query Frame = -3
Query:  247 GALLMGDAFNMRHPLTGGGMTVALSDIVVLRNLLKPLHDFNDAASLGRYLESFYTLRKPVASTINTLAGALYKVFSSSPDQARKEMRQACFDYLSLGGVFSTGPVALLSGLNPRPLSLVLHFFAVAIYGVGRLLLPFPSPKRMWIGARLISGASGIIFPIIKAEGVRQMFFPATIPAVYR 786
            G +++GDAFNMRHP    GM V LSDI++LR LL+PL + +DA  +   ++SFY +RKP+++T+NTL  A  +V  +S D+A++ MRQ CFDYLS GG  ++G +ALL G+NPRPLSL+ H   + +  +G+LL PFPSP  +W   RL             AEGV QM  PA   A YR
Sbjct:  330 GVIVLGDAFNMRHPAIASGMMVVLSDILILRRLLQPLRNLSDANKVSEVIKSFYVIRKPMSATVNTLGNAFSQVLIASTDEAKEAMRQGCFDYLSSGGFRTSGMMALLGGMNPRPLSLIFHLCGITLSSIGQLLSPFPSPLGIWHSLRLFG-----------AEGVSQMLSPA-YAAAYR 497          
BLAST of DT214600 vs. ExPASy Swiss-Prot
Match: ERG13_ARATH (Squalene monooxygenase 2 OS=Arabidopsis thaliana GN=SQP2 PE=2 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 3.270e-41
Identity = 81/180 (45.00%), Postives = 121/180 (67.22%), Query Frame = -3
Query:  247 GALLMGDAFNMRHPLTGGGMTVALSDIVVLRNLLKPLHDFNDAASLGRYLESFYTLRKPVASTINTLAGALYKVFSSSPDQARKEMRQACFDYLSLGGVFSTGPVALLSGLNPRPLSLVLHFFAVAIYGVGRLLLPFPSPKRMWIGARLISGASGIIFPIIKAEGVRQMFFPATIPAVYR 786
            G +++GDAFNMRHP+   GM VALSDI +LRNLLKPL + ++   +   ++SFY +RKP+++T+NTLA    +V  ++ D+AR+ MRQ CF+YL+ G   + G + +L G+NP PL+LVLH  A+ +  +G LL PFPSP+R W   R+++ A  ++   +  EG ++M  P T  A YR
Sbjct:  329 GVIVLGDAFNMRHPIIASGMMVALSDICILRNLLKPLPNLSNTKKVSDLVKSFYIIRKPMSATVNTLASIFSQVLVATTDEAREGMRQGCFNYLARGDFKTRGLMTILGGMNPHPLTLVLHLVAITLTSMGHLLSPFPSPRRFWHSLRILAWALQMLGAHLVDEGFKEMLIP-TNAAAYR 507          
BLAST of DT214600 vs. ExPASy Swiss-Prot
Match: ERG1_RAT (Squalene monooxygenase OS=Rattus norvegicus GN=Sqle PE=2 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.627e-32
Identity = 79/168 (47.02%), Postives = 108/168 (64.29%), Query Frame = -3
Query:  295 GALLMGDAFNMRHPLTGGGMTVALSDIVVLRNLLKPLHDFNDAASLGRYLESFYTLRKPVAS-TINTLAGALYKVFSSSPDQARKEMRQACFDYLSLGGVFSTGPVALLSGLNPRPLSLVLHFFAVAIYGVGRLLLPFP---SPKRMWIGARLISGASGIIFPIIKAE 786
            G LL+GDA+N+RHPLTGGGMTVAL DI + R LLK + D  D A++ +  +SF+  RK   S  +N LA ALY++FS++ D  R ++R+ACF Y  LGG   TGPV LLS L+P PL L+ HFF+VA+Y         P    P+ ++    ++  A  IIFP+I +E
Sbjct:  401 GVLLLGDAYNLRHPLTGGGMTVALKDIKIWRQLLKDIPDLYDDAAIFQAKKSFFWSRKRSHSFVVNVLAQALYELFSATDDSLR-QLRKACFLYFKLGGECLTGPVGLLSILSPDPLLLIRHFFSVAVYATYFCFKSEPWATKPRALFSSGAILYKACSIIFPLIYSE 567          
BLAST of DT214600 vs. ExPASy Swiss-Prot
Match: ERG1_HUMAN (Squalene monooxygenase OS=Homo sapiens GN=SQLE PE=2 SV=2)

HSP 1 Score: 138.658 bits (348), Expect = 3.624e-32
Identity = 80/168 (47.62%), Postives = 107/168 (63.69%), Query Frame = -3
Query:  295 GALLMGDAFNMRHPLTGGGMTVALSDIVVLRNLLKPLHDFNDAASLGRYLESFYTLRKPVAS-TINTLAGALYKVFSSSPDQARKEMRQACFDYLSLGGVFSTGPVALLSGLNPRPLSLVLHFFAVAIYGVGRLLLPFP---SPKRMWIGARLISGASGIIFPIIKAE 786
            G LL+GDA+NMRHPLTGGGMTVA  DI + R LLK + D  D A++    +SFY  RK   S  +N LA ALY++FS++ D +  ++R+ACF Y  LGG    GPV LLS L+P PL+L+ HFFAVAIY V       P    P+ +   + ++  A  +IFP+I +E
Sbjct:  402 GVLLLGDAYNMRHPLTGGGMTVAFKDIKLWRKLLKGIPDLYDDAAIFEANKSFYWARKTSHSFVVNILAQALYELFSAT-DDSLHQLRKACFLYFKLGGECVAGPVGLLSVLSPNPLALIGHFFAVAIYAVYFCFKSEPWITKPRALLSSSAVLYKACSVIFPLIYSE 568          
BLAST of DT214600 vs. ExPASy Swiss-Prot
Match: ERG1_MOUSE (Squalene monooxygenase OS=Mus musculus GN=Sqle PE=2 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 1.054e-31
Identity = 77/168 (45.83%), Postives = 108/168 (64.29%), Query Frame = -3
Query:  295 GALLMGDAFNMRHPLTGGGMTVALSDIVVLRNLLKPLHDFNDAASLGRYLESFYTLRKPVAS-TINTLAGALYKVFSSSPDQARKEMRQACFDYLSLGGVFSTGPVALLSGLNPRPLSLVLHFFAVAIYGVGRLLLPFP---SPKRMWIGARLISGASGIIFPIIKAE 786
            G L++GDA+N+RHPLTGGGMTVAL DI + R LLK + D  D A++ +  +SF+  RK   S  +N LA ALY++FS++ D +  ++R+ACF Y  LGG   TGPV LLS L+P PL L+ HFF+VAIY         P    P+ ++    ++  A  I+FP+I +E
Sbjct:  400 GVLILGDAYNLRHPLTGGGMTVALKDIKLWRQLLKDIPDLYDDAAIFQAKKSFFWSRKRTHSFVVNVLAQALYELFSAT-DDSLHQLRKACFLYFKLGGECVTGPVGLLSILSPHPLVLIRHFFSVAIYATYFCFKSEPWATKPRALFSSGAVLYKACSILFPLIYSE 566          
BLAST of DT214600 vs. ExPASy Swiss-Prot
Match: ERG1_CANAL (Squalene monooxygenase OS=Candida albicans GN=ERG1 PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.129e-25
Identity = 66/145 (45.52%), Postives = 90/145 (62.07%), Query Frame = -3
Query:  373 GALLMGDAFNMRHPLTGGGMTVALSDIVVLRNLLKP--LHDFNDAASLGRYLESFYTLRKPVASTINTLAGALYKVFSSSPDQARKEMRQACFDYLSLGGVFSTGPVALLSGLNPRPLSLVLHFFAVAIYGV-----GRLLLPFP 786
            G +L+GD+ NMRHPLTGGGMTV L+D V+L  LL P  + DF+D   + + L++F+  RK + + INTL+ +LY +F++     R  +R  CF Y   GG    GP+ LLSG+ P P+ L  HFF+VA Y V      R LL FP
Sbjct:  326 GFILLGDSLNMRHPLTGGGMTVGLNDSVLLAKLLHPKFVEDFDDHQLIAKRLKTFHRKRKNLDAVINTLSISLYSLFAADKKPLR-ILRNGCFKYFQRGGECVNGPIGLLSGMLPFPMLLFNHFFSVAFYSVYLNFIERGLLGFP 469          
The following BLAST results are available for this feature:
BLAST of DT214600 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
ERG1_PANGI7.435e-8682.07Squalene monooxygenase OS=Panax ginseng PE=2 SV=1[more]
ERG11_ARATH1.516e-4649.15Squalene monooxygenase 1,1 OS=Arabidopsis thaliana... [more]
ERG12_ARATH7.521e-4648.07Squalene monooxygenase 1,2 OS=Arabidopsis thaliana... [more]
ERG12_BRANA2.858e-4547.78Squalene monooxygenase 1,2 OS=Brassica napus GN=SQ... [more]
ERG11_BRANA2.958e-4247.78Squalene monooxygenase 1,1 OS=Brassica napus GN=SQ... [more]
ERG13_ARATH3.270e-4145.00Squalene monooxygenase 2 OS=Arabidopsis thaliana G... [more]
ERG1_RAT1.627e-3247.02Squalene monooxygenase OS=Rattus norvegicus GN=Sql... [more]
ERG1_HUMAN3.624e-3247.62Squalene monooxygenase OS=Homo sapiens GN=SQLE PE=... [more]
ERG1_MOUSE1.054e-3145.83Squalene monooxygenase OS=Mus musculus GN=Sqle PE=... [more]
ERG1_CANAL1.129e-2545.52Squalene monooxygenase OS=Candida albicans GN=ERG1... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_06L13_f2 Parent Washington Navel Orange Red Scale-Infested Rind cDNA Library UCRCS11-2 Citrus sinensis cDNA clone CS_WEd0006c_F07_VN, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DT214600 ID=DT214600; Name=DT214600; organism=Citrus sinensis; type=EST; length=788bp
TAAGTATCATACATACAATTATGGGATTGTTTGTATGATTTTATCCATCC
TCGAAACCACAAATAATTATATAATGTCCACGTTCTTCTGTTTTCTATCT
TTTTACCCTTTTTAACAAAGGCAGTTTGCATATAAGATGTCCTTAAGGTT
GATGGAGGTTCAGATACAAGAGGCACGTTCTTAATAGCAACAAAGCCTCA
GCTACATTGATTTTTGTTTGGTATGTCAATCCTCAACAGGAGGGGCTCTG
TAGACAGCAGGTATGGTGGCAGGGAAGAACATTTGCCTCACTCCTTCGGC
CTTAATGATGGGGAAAATGATACCTGATGCACCCGAAATTAACCTAGCTC
CAATCCACATGCGCTTAGGTGAAGGAAACGGCAGTAGCAAACGACCGACA
CCATATATTGCCACAGCAAAGAAATGAAGAACTAAACTCAAGGGGCGAGG
GTTTAGACCAGAAAGTAGAGCAACTGGTCCAGTTGAAAAGACACCTCCAA
GGCTTAAATAATCGAAACATGCTTGGCGCATTTCCTTCCTTGCTTGATCA
GGAGAAGAGGAAAACACCTTGTAAAGGGCACCTGCCAGAGTATTTATTGT
AGATGCCACTGGCTTGCGCAGGGTGTAAAAGGACTCAAGATATCGGCCAA
GAGAAGCTGCGTCGTTAAAGTCATGGAGTGGCTTAAGAAGATTCCTGAGT
ACAACAATATCAGACAACGCCACAGTCATTCCACCACCAGTTAAAGGATG
ACGCATGTTGAAAGCATCACCCATCAGAAGGGCCCCAG
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