DT214576

Overview
NameDT214576
Unique NameDT214576
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length833
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DT214576_ssr257 microsatellite DT214576_ssr257:257..270. BLAST: Citrus ESTs to Prunus persica proteins V1
DT214576_ssr366 microsatellite DT214576_ssr366:366..377. BLAST: Citrus ESTs to Prunus persica proteins V1
DT214576_ssr233 microsatellite DT214576_ssr233:233..247. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
[Close]
BLAST of DT214576 vs. ExPASy Swiss-Prot
Match: DOF25_ARATH (Dof zinc finger protein DOF2.5 OS=Arabidopsis thaliana GN=DOF2.5 PE=2 SV=3)

HSP 1 Score: 81.6481 bits (200), Expect = 5.794e-15
Identity = 64/148 (43.24%), Postives = 86/148 (58.11%), Query Frame = -3 
Query:  388 SPVSALDLLRTGI--ASRAGLDH-FIPT-PMPDSNTLF--SSGFP-LQDIKPAATLSFSIDQANRFGIQDNIGNGS-----------RLFFPFGE-LKQLSSASTTEVDH------------HSNKGTSTSTGYWNGMF----GGGSW 726
            SPVSAL+LLRTG+  +SR+G++  F+P+  M DSNT+   SSGFP + D KP+  LSFS D     G+  N  N S           R+ FPFG+ +K+LSS+ T EVDH            ++N  +S + GYW+GMF    GG SW
Sbjct:  226 SPVSALELLRTGVNVSSRSGINSSFMPSGSMMDSNTVLYTSSGFPTMVDYKPS-NLSFSTDHQ---GLGHNSNNRSEALHSDHHQQGRVLFPFGDQMKELSSSITQEVDHDDNQQQKSHGNNNNNNNSSPNNGYWSGMFSTTGGGSSW 369
[Close]
BLAST of DT214576 vs. ExPASy Swiss-Prot
Match: DOF37_ARATH (Dof zinc finger protein DOF3.7 OS=Arabidopsis thaliana GN=DOF3.7 PE=1 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 6.629e-11
Identity = 54/128 (42.19%), Postives = 69/128 (53.91%), Query Frame = -3 
Query:  388 ALDLLRTGIASRAGLDHFIPTPMPDSNT-LFSS-GFP-LQDIKPA-ATLSFSIDQANRFG---------IQDN---IGNGSRLFFPFGELKQLSSASTTEVDHHSNKGTSTSTGYWNGMF---GGGSW 714
            AL+LLR+   S  G++ F+P  M DSN+ L+SS GFP + D K +   LSFSID     G          QDN   +   SR+ FPF ++K+LS  STT+   H N        YWNGMF   GG SW
Sbjct:  177 ALELLRSNGVSSRGMNTFLPGQMMDSNSVLYSSLGFPTMPDYKQSNNNLSFSIDHHQGIGHNTINSNQRAQDNNDDMNGASRVLFPFSDMKELS--STTQEKSHGN------NTYWNGMFSNTGGSSW 296
The following BLAST results are available for this feature:
BLAST of DT214576 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
DOF25_ARATH5.794e-1543.24Dof zinc finger protein DOF2.5 OS=Arabidopsis thal... [more]
DOF37_ARATH6.629e-1142.19Dof zinc finger protein DOF3.7 OS=Arabidopsis thal... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS10_5H08_b2 Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10-2 Citrus sinensis cDNA clone UCRCS10-5H08-O15-6.d-polyt, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DT214576 ID=DT214576; Name=DT214576; organism=Citrus sinensis; type=EST; length=833bp
CAAAGAAAGAAAAACATAATACAGCAATGTCATCACCTGGTGCCCTAACT
AATAATCATCAACTTCGTCCGATAGAAGAACAAATGAATACTGGCTATGC
AGCTGTATTCACCTCCTCTTCTATGTACATGCAGTCTACACCACACACAA
AGTATCTAATTAACTAAAACCCCCTATGAAGCTAACCGAAAATGTAGAAG
CTCCAAATTTCATACACTGTTCAAATTTTAACAGAAAAGAAAAGAAAAAA
AAAAAATATATATATATATAAATATGGATCTTTTTGTTAGTTACTTCTAA
ATATCGAAACAACTTAAAACAATTAACAGTAGTGACCAGCAGAGCGCAGG
CAAGTGAAAAAGAAGATAAATAAATAAACTTAATTCACCAGGATCCCCCA
CCAAACATTCCATTCCAGTATCCCGTTGAAGTGGATGTTCCCTTGTTGCT
GTGATGATCAACTTCAGTCGTTGAGGCGCTTGAAAGTTGTTTCAGTTCTC
CGAAAGGAAAGAAGAGCCGGCTCCCGTTACCAATATTGTCTTGAATTCCA
AACCTATTTGCTTGATCAATTGAAAAACTTAGGGTTGCTGCTGGTTTGAT
ATCTTGCAAAGGAAACCCAGATGAAAATAAAGTATTTGAATCCGGCATCG
GTGTTGGAATAAAATGATCCAAACCCGCCCTCGAAGCAATTCCTGTCCTC
AGGAGATCTAGAGCTGAAACAGGAGACATGTTGTTATTGATATTATCATT
GCTGGTAGTATTAGTTTCGGCTTTGGACGCTACTGCTGGATGATCAGCAT
ATTGAGACATGTCATTTGCGTTATTATGCATGA
back to top