DT214546

Overview
NameDT214546
Unique NameDT214546
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length870
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DT214546 vs. ExPASy Swiss-Prot
Match: YC47_SCHPO (Uncharacterized WD repeat-containing protein C1672.07 OS=Schizosaccharomyces pombe GN=SPCC1672.07 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 9.560e-16
Identity = 57/190 (30.00%), Postives = 91/190 (47.89%), Query Frame = -1
Query:  301 PKSQWQSLINLDIIKARNXXXXXXXXXXKAPFFLPSVPSLSGEILFKPSESTKEDTENLKVENKTKPDIPVSQFIQLLHSCAEMKNFSAFTDYIKSLSPSTLDMELRMLQIIDHDDHQELDKRPEYLSIELLLDYLIHEISCRNNFEFIQAVIRLFLKIHGETIRCHTKLQDKARKLLEVQSAVWQKIDK 870
            P++QWQ+LINL+ IKARN          KAPFFLPS+   S   + K   +T+          K    +  ++F  LLH      +  AF +Y+KSL P+ +D+E+R            LD  P Y    L ++ +   +S R +FE +QA + +F K H + +  H   +D       +++  W+ + K
Sbjct:  712 PRTQWQTLINLEAIKARNAPKEVPKVPEKAPFFLPSLKDQSEATVPKQPIATEISKPTAVASIK----VSGTEFSTLLHG----NDDDAFFEYLKSLGPAKIDLEIR-----------SLDAYPPYEEFILFINIMTRRLSKRRDFELVQACMSVFTKSHEDVLLMHDTPEDTVPVFESLKA--WESVHK 880          
BLAST of DT214546 vs. ExPASy Swiss-Prot
Match: WDR36_HUMAN (WD repeat-containing protein 36 OS=Homo sapiens GN=WDR36 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.182e-11
Identity = 52/208 (25.00%), Postives = 92/208 (44.23%), Query Frame = -1
Query:  250 PKSQWQSLINLDIIKARNXXXXXXXXXXKAPFFLPSVPSLSGEILFKPSESTKEDTENLKVENKTKPDIPVSQFIQLLHSCAEMKNFSAFTDYIKSLSPSTLDMELRMLQIIDHDDHQELDKRPEYLS-IELLLDYLIHEISCRNNFEFIQAVIRLFLKIHGETIRCHTKLQDKARKLLEVQSAVWQKIDKMFQSARCVVSFLSNSQL 870
            P+S+W++L+NLD+IK +N           APFF+P++P L   +    +     D +  KV N        S F   L        +    + +K   PS ++ ELR L     D    ++    +L  I ++LD        + +FE  QA + LFLK+H + +     L ++   L       W  +  +F  + C++++L ++ L
Sbjct:  758 PESRWKNLLNLDVIKKKNKPKEPPKVPKSAPFFIPTIPGL---VPRYAAPEQNNDPQQSKVVN-LGVLAQKSDFCLKLEEGLVNNKYDTALNLLKESGPSGIETELRSL---SPDCGGSIEVMQSFLKMIGMMLDR-------KRDFELAQAYLALFLKLHLKMLPSEPVLLEEITNLSSQVEENWTHLQSLFNQSMCILNYLKSALL 951          
The following BLAST results are available for this feature:
BLAST of DT214546 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
YC47_SCHPO9.560e-1630.00Uncharacterized WD repeat-containing protein C1672... [more]
WDR36_HUMAN3.182e-1125.00WD repeat-containing protein 36 OS=Homo sapiens GN... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS09_42H02_b2 Ruby Orange Developing Seed cDNA Library UCRCS09-2 Citrus sinensis cDNA clone UCRCS09-42H02-P3-1-7.d-polyt, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DT214546 ID=DT214546; Name=DT214546; organism=Citrus sinensis; type=EST; length=870bp
GAAACTTTCATACAATATCAAAAATTACAAATATTACAAACATGAAGAAT
TTATCCAACAGCTAGACTCAATTCCTTTGCTGATCTGCAGTTCCTAATAT
ATAGGGGGGTCCTAAATACAAAATTTGTGACTGTGATTTATAATTAGAAG
CAAGAGAGGTGACTGCCTATGACATTTAAAAAAGAAAATAATCATTTAAG
GTGTTAAATCAAAATTATATTTGAATACAATAATACCTCAGGACTCCTAT
AATTGTGAGTTGCTGAGGAAACTGACCACGCATCTAGCACTTTGGAACAT
TTTATCAATTTTCTGCCATACTGCACTTTGAACTTCCAGAAGCTTCCTTG
CCTTATCCTGTAATTTTGTGTGGCATCGTATCGTTTCACCATGTATCTTC
AGAAACAACCTGATAACAGCTTGTATAAACTCGAAATTATTTCTGCATGA
AATCTCGTGAATCAAATAATCCAGAAGCAGTTCAATCGATAAATACTCAG
GTCTTTTATCAAGTTCTTGGTGATCATCATGATCAATGATCTGAAGCATT
CGAAGTTCCATATCCAAAGTAGATGGGGACAGACTTTTAATATAATCAGT
AAATGCTGAAAAATTTTTCATCTCTGCACAGGAATGAAGAAGTTGTATAA
ATTGGGACACTGGGATGTCAGGTTTTGTCTTGTTTTCCACCTTAAGGTTT
TCTGTATCCTCCTTAGTGGACTCACTAGGCTTAAACAATATTTCTCCTGA
AAGGGATGGAACTGAAGGCAAGAAGAAAGGAGCCTTCTCTGGTTTCTTAG
GAGGCTCAATTGGTTTATTGCGGGCCTTAATAATATCCAGATTGATCAAG
CTTTGCCACTGGCTTTTAGG
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