DT214544

Overview
NameDT214544
Unique NameDT214544
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length559
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DT214544 vs. ExPASy Swiss-Prot
Match: GRXC2_ARATH (Glutaredoxin-C2 OS=Arabidopsis thaliana GN=GRXC2 PE=2 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 5.198e-38
Identity = 74/96 (77.08%), Postives = 84/96 (87.50%), Query Frame = -2
Query:  250 MATQKAKEIISGNAVAVFSKSFCPCCVRVKELLQQLGAKIIAVELDKESDGSQVQSALAEWTGQRTVPNVFIGEKHIGGCDSVTNLHRDGKLVPML 537
            MA QKAKEI++  +V VFSK++CP CVRVKELLQQLGAK  AVELD ESDGSQ+QS LAEWTGQRTVPNVFIG  HIGGCD+ +NLH+DGKLVP+L
Sbjct:    1 MAMQKAKEIVNSESVVVFSKTYCPYCVRVKELLQQLGAKFKAVELDTESDGSQIQSGLAEWTGQRTVPNVFIGGNHIGGCDATSNLHKDGKLVPLL 96          
BLAST of DT214544 vs. ExPASy Swiss-Prot
Match: GLRX_SOLLC (Glutaredoxin OS=Solanum lycopersicum PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 1.849e-35
Identity = 69/96 (71.88%), Postives = 82/96 (85.42%), Query Frame = -2
Query:  250 MATQKAKEIISGNAVAVFSKSFCPCCVRVKELLQQLGAKIIAVELDKESDGSQVQSALAEWTGQRTVPNVFIGEKHIGGCDSVTNLHRDGKLVPML 537
            M+  KAKEI+SGN VAVFSK++CP CV VK+LL +LGA   AVELD E DGS++Q+ALAEWTGQRTVPNVFIG KHIGGCD+ T LHR+GKL+P+L
Sbjct:    1 MSLAKAKEIVSGNPVAVFSKTYCPFCVSVKDLLSKLGATFKAVELDSEKDGSEIQAALAEWTGQRTVPNVFIGRKHIGGCDATTALHREGKLLPLL 96          
BLAST of DT214544 vs. ExPASy Swiss-Prot
Match: GLRX_VERFO (Glutaredoxin OS=Vernicia fordii PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 2.260e-33
Identity = 64/96 (66.67%), Postives = 79/96 (82.29%), Query Frame = -2
Query:  250 MATQKAKEIISGNAVAVFSKSFCPCCVRVKELLQQLGAKIIAVELDKESDGSQVQSALAEWTGQRTVPNVFIGEKHIGGCDSVTNLHRDGKLVPML 537
            MA  KA+E++S N+V VFSK+FCP C  VK+LL QLGA+   +ELD ESDGS +Q+ALAEWTGQRTVPNVFIG KHIGGCD  T +H++GKL+P+L
Sbjct:    1 MAMIKAQELVSSNSVVVFSKTFCPYCTSVKQLLNQLGAQFKVIELDSESDGSDLQNALAEWTGQRTVPNVFIGGKHIGGCDKTTGMHQEGKLIPLL 96          
BLAST of DT214544 vs. ExPASy Swiss-Prot
Match: GLRX_RICCO (Glutaredoxin OS=Ricinus communis PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 2.952e-33
Identity = 67/96 (69.79%), Postives = 77/96 (80.21%), Query Frame = -2
Query:  250 MATQKAKEIISGNAVAVFSKSFCPCCVRVKELLQQLGAKIIAVELDKESDGSQVQSALAEWTGQRTVPNVFIGEKHIGGCDSVTNLHRDGKLVPML 537
            MA  K KE++S NAV VFSK++CP C  VK+LL QLGAK   VELD ESDGS++Q+ALAEWTGQRTVPNVFIG KHIGGCDS T  H  G+LVP+L
Sbjct:    1 MAMTKTKELVSSNAVVVFSKTYCPYCTSVKKLLDQLGAKYKVVELDTESDGSEIQTALAEWTGQRTVPNVFIGGKHIGGCDSTTAKHSQGQLVPLL 96          
BLAST of DT214544 vs. ExPASy Swiss-Prot
Match: GRXC6_ORYSJ (Glutaredoxin-C6 OS=Oryza sativa subsp. japonica GN=GRXC6 PE=1 SV=2)

HSP 1 Score: 134.035 bits (336), Expect = 4.712e-31
Identity = 64/96 (66.67%), Postives = 76/96 (79.17%), Query Frame = -2
Query:  250 MATQKAKEIISGNAVAVFSKSFCPCCVRVKELLQQLGAKIIAVELDKESDGSQVQSALAEWTGQRTVPNVFIGEKHIGGCDSVTNLHRDGKLVPML 537
            MA  KAKE ++   V V+SKS+CP CVRVK+L +QLGA   A+ELD ESDGS++QSALAEWTGQRTVPNVFI  KHIGGCD    L+ +GKLVP+L
Sbjct:    1 MALAKAKETVASAPVVVYSKSYCPFCVRVKKLFEQLGATFKAIELDGESDGSELQSALAEWTGQRTVPNVFINGKHIGGCDDTLALNNEGKLVPLL 96          
BLAST of DT214544 vs. ExPASy Swiss-Prot
Match: GRXC4_ORYSJ (Glutaredoxin-C4, chloroplastic OS=Oryza sativa subsp. japonica GN=GRXC4 PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 5.760e-29
Identity = 61/96 (63.54%), Postives = 73/96 (76.04%), Query Frame = -2
Query:  250 MATQKAKEIISGNAVAVFSKSFCPCCVRVKELLQQLGAKIIAVELDKESDGSQVQSALAEWTGQRTVPNVFIGEKHIGGCDSVTNLHRDGKLVPML 537
            MA  KAKEI++ + V VFSK++CP C RVK LL +L A   AVELD ESDGS++QSALA+WTGQRTVP VFI  KHIGGCD    +H+ G LVP+L
Sbjct:   27 MALDKAKEIVASSPVVVFSKTYCPFCARVKRLLAELAASYKAVELDVESDGSELQSALADWTGQRTVPCVFIKGKHIGGCDDTMAMHKGGNLVPLL 122          
BLAST of DT214544 vs. ExPASy Swiss-Prot
Match: GRXC1_ARATH (Glutaredoxin-C1 OS=Arabidopsis thaliana GN=GRXC1 PE=2 SV=2)

HSP 1 Score: 119.398 bits (298), Expect = 1.201e-26
Identity = 57/97 (58.76%), Postives = 71/97 (73.20%), Query Frame = -2
Query:  250 KMATQKAKEIISGNAVAVFSKSFCPCCVRVKELLQQLGAKIIAVELDKESDGSQVQSALAEWTGQRTVPNVFIGEKHIGGCDSVTNLHRDGKLVPML 540
            ++   KAKEI+S   V VFSK++C  C RVK+LL QLGA    +ELD+ SDG ++QSAL+EWTGQ TVPNVFI   HIGGCD V   ++ GKLVP+L
Sbjct:   16 EVVVNKAKEIVSAYPVVVFSKTYCGYCQRVKQLLTQLGATFKVLELDEMSDGGEIQSALSEWTGQTTVPNVFIKGNHIGGCDRVMETNKQGKLVPLL 112          
BLAST of DT214544 vs. ExPASy Swiss-Prot
Match: GLRX_DICDI (Glutaredoxin OS=Dictyostelium discoideum GN=grxA PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.163e-21
Identity = 48/92 (52.17%), Postives = 64/92 (69.57%), Query Frame = -2
Query:  250 KAKEIISGNAVAVFSKSFCPCCVRVKELLQQLGAKIIAVELDKESDGSQVQSALAEWTGQRTVPNVFIGEKHIGGCDSVTNLHRDGKLVPML 525
            K K +I  + + +FSK+ CP C+ VK+L ++L      VELD ESDGS++QSA  + +G RTVP VFI EK IGGCD+ T LH  GKL+P+L
Sbjct:    3 KVKALIKAHKLIIFSKTTCPYCISVKDLFKKLKVVPFVVELDLESDGSELQSAAGQISGVRTVPQVFINEKFIGGCDATTKLHSQGKLIPLL 94          
BLAST of DT214544 vs. ExPASy Swiss-Prot
Match: TRXR3_MOUSE (Thioredoxin reductase 3 (Fragment) OS=Mus musculus GN=Txnrd3 PE=1 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 9.218e-19
Identity = 42/98 (42.86%), Postives = 62/98 (63.27%), Query Frame = -2
Query:  250 RKMATQKAKEIISGNAVAVFSKSFCPCCVRVKELLQQLGAKIIAVELDKESDGSQVQSALAEWTGQRTVPNVFIGEKHIGGCDSVTNLHRDGKLVPML 543
            R+   ++ +++I GN V +FSKS+CP   RVKEL   LG     +ELD+  DG+ VQ  L E + Q+TVPN+F+ + H+GGCD     H++G L  +L
Sbjct:  106 REELRRRLRDLIEGNRVMIFSKSYCPHSTRVKELFSSLGVVYNILELDQVDDGASVQEVLTEISNQKTVPNIFVNKVHVGGCDRTFQAHQNGLLQKLL 203          
BLAST of DT214544 vs. ExPASy Swiss-Prot
Match: TRXR3_HUMAN (Thioredoxin reductase 3 OS=Homo sapiens GN=TXNRD3 PE=1 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 6.606e-17
Identity = 39/88 (44.32%), Postives = 57/88 (64.77%), Query Frame = -2
Query:  250 IISGNAVAVFSKSFCPCCVRVKELLQQLGAKIIAVELDKESDGSQVQSALAEWTGQRTVPNVFIGEKHIGGCDSVTNLHRDGKLVPML 513
            +I  + V +FSKS+CP   RVKEL   LG +   +ELD+  DG++VQ  L+E T Q+TVPN+F+ + H+GGCD     ++ G L  +L
Sbjct:  173 LIERSRVVIFSKSYCPHSTRVKELFSSLGVECNVLELDQVDDGARVQEVLSEITNQKTVPNIFVNKVHVGGCDQTFQAYQSGLLQKLL 260          
The following BLAST results are available for this feature:
BLAST of DT214544 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
GRXC2_ARATH5.198e-3877.08Glutaredoxin-C2 OS=Arabidopsis thaliana GN=GRXC2 P... [more]
GLRX_SOLLC1.849e-3571.88Glutaredoxin OS=Solanum lycopersicum PE=3 SV=1[more]
GLRX_VERFO2.260e-3366.67Glutaredoxin OS=Vernicia fordii PE=3 SV=1[more]
GLRX_RICCO2.952e-3369.79Glutaredoxin OS=Ricinus communis PE=3 SV=1[more]
GRXC6_ORYSJ4.712e-3166.67Glutaredoxin-C6 OS=Oryza sativa subsp. japonica GN... [more]
GRXC4_ORYSJ5.760e-2963.54Glutaredoxin-C4, chloroplastic OS=Oryza sativa sub... [more]
GRXC1_ARATH1.201e-2658.76Glutaredoxin-C1 OS=Arabidopsis thaliana GN=GRXC1 P... [more]
GLRX_DICDI1.163e-2152.17Glutaredoxin OS=Dictyostelium discoideum GN=grxA P... [more]
TRXR3_MOUSE9.218e-1942.86Thioredoxin reductase 3 (Fragment) OS=Mus musculus... [more]
TRXR3_HUMAN6.606e-1744.32Thioredoxin reductase 3 OS=Homo sapiens GN=TXNRD3 ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_3A06_b2 Ruby Orange Developing Seed cDNA Library UCRCS09-2 Citrus sinensis cDNA clone UCRCS09-3A06-B11-1-4.d-polyt, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DT214544 ID=DT214544; Name=DT214544; organism=Citrus sinensis; type=EST; length=559bp
AATCGAGTTTCTATTAACGTTACAAATATTACGAGAAATGACATTACTAG
CAAATGCCGTTAATTATAACATAAATGTATCAGAAGTTCAATACCGACTT
CAACATAAACACAACTTTAAAACATTTCAGACAAAGTTCAGATTTATTGC
TCAAACTTATTTTATTCCTGAGAGAAGTAAATCACAAATTGATTGTGCCC
TTTAAGAAGAAGTAGTTCCAGCTGTTGCAGCGATAGCTCCAGCTTCGGTC
AACATAGGAACTAACTTACCGTCTCTGTGCAGGTTTGTTACAGAATCGCA
TCCACCGATGTGTTTTTCACCTATGAACACATTGGGAACGGTGCGTTGTC
CAGTCCATTCTGCCAGAGCAGATTGAACTTGGCTACCATCACTCTCTTTG
TCGAGCTCAACGGCGATGATTTTGGCTCCCAATTGTTGCAAAAGCTCCTT
CACTCTCACACAGCATGGGCAAAACGACTTGCTGAAAACAGCGACGGCGT
TGCCGGAAATGATCTCTTTAGCCTTCTGCGTCGCCATCTTCCTTCGAAAT
TATGAAAAC
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