EY676899

Overview
NameEY676899
Unique NameEY676899
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length983
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig870 contig Csv1_Contig870:126..1108. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY676899 vs. ExPASy Swiss-Prot
Match: MNME_TRIEI (tRNA modification GTPase mnmE OS=Trichodesmium erythraeum (strain IMS101) GN=mnmE PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 3.670e-38
Identity = 76/158 (48.10%), Postives = 113/158 (71.52%), Query Frame = 3
Query:   18 PKILTREDVVELQCHGPEVCLRRVLRACLEAGATLAQPGEFTLRAFLNGRLDLSQAENVEKLISXXXXXXXXXXXXGIQGGFSSLVTSVRAKCIELLTEIEARLDFDDEMPPLNLNLVMDKIHAMSQDVENAMETANYDKLLQSGLQIAIGGRPNVGK 491
            P+  TREDVVE  CHG  + +++VL+ C+EAGA LAQPGEFTLRAFLNGRLDL+QAE++ +L+             G+QG  +S +  +RA C+++L EIEAR+DF++++PPL+ + +  K+  +  D+   + TA+  +LL++GL++AI GRPNVGK
Sbjct:   82 PRSYTREDVVEFHCHGGIIAIQQVLQLCIEAGAELAQPGEFTLRAFLNGRLDLTQAESIAELVGSQSPAAAQVALAGLQGKLASPIRHLRACCLDILAEIEARIDFEEDLPPLDESEISQKLDDILVDLSMVLATASRGELLRTGLKVAIIGRPNVGK 239          
BLAST of EY676899 vs. ExPASy Swiss-Prot
Match: MNME_CYAP4 (tRNA modification GTPase mnmE OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=mnmE PE=3 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 6.261e-38
Identity = 77/160 (48.12%), Postives = 110/160 (68.75%), Query Frame = 3
Query:   12 VGPKILTREDVVELQCHGPEVCLRRVLRACLEAGATLAQPGEFTLRAFLNGRLDLSQAENVEKLISXXXXXXXXXXXXGIQGGFSSLVTSVRAKCIELLTEIEARLDFDDEMPPLNLNLVMDKIHAMSQDVENAMETANYDKLLQSGLQIAIGGRPNVGK 491
            + P+  T+EDVVE  CHG  + +++VL+ CLEAGA LAQPGEFTLRAFL+GRLDL+QAE+V  L+             G+QG     +  +R  CI++L EIEAR+DF++++PPL+LN +  +I     +V   + TA+  +LL++GL++AI GRPNVGK
Sbjct:   76 LAPRSYTKEDVVEFHCHGGMIAVQQVLQLCLEAGAVLAQPGEFTLRAFLHGRLDLTQAESVADLVGAKSPQAAQAALAGLQGKLIQPLQQLRRTCIDILAEIEARIDFEEDLPPLDLNQISSQIQHSLTEVNRILATADRGELLRTGLKVAIVGRPNVGK 235          
BLAST of EY676899 vs. ExPASy Swiss-Prot
Match: MNME_SYNP6 (tRNA modification GTPase mnmE OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=mnmE PE=3 SV=2)

HSP 1 Score: 157.532 bits (397), Expect = 1.068e-37
Identity = 76/160 (47.50%), Postives = 111/160 (69.38%), Query Frame = 3
Query:   12 VGPKILTREDVVELQCHGPEVCLRRVLRACLEAGATLAQPGEFTLRAFLNGRLDLSQAENVEKLISXXXXXXXXXXXXGIQGGFSSLVTSVRAKCIELLTEIEARLDFDDEMPPLNLNLVMDKIHAMSQDVENAMETANYDKLLQSGLQIAIGGRPNVGK 491
            + P+  TREDVVEL CHG  + +++ L+ C+ AGA LA+PGEFTLRAFLNGRLDLSQAE++  LIS             +QG     +  +R +C+++L E+EAR+DF+D++PPL+L  +  ++ A   D++  + TA+  +LL++GL+IAI GRPNVGK
Sbjct:   77 LAPRSYTREDVVELHCHGGLMPVQQTLQLCIRAGARLAEPGEFTLRAFLNGRLDLSQAESIADLISAQSPQAAQAALGSLQGKLGHPIRQLRDRCLDILAEVEARIDFEDDLPPLDLEAIAAQLTAAGADMQAILSTADRGELLRTGLKIAIVGRPNVGK 236          
BLAST of EY676899 vs. ExPASy Swiss-Prot
Match: MNME_SYNE7 (tRNA modification GTPase mnmE OS=Synechococcus elongatus (strain PCC 7942) GN=mnmE PE=3 SV=3)

HSP 1 Score: 157.532 bits (397), Expect = 1.068e-37
Identity = 76/160 (47.50%), Postives = 111/160 (69.38%), Query Frame = 3
Query:   12 VGPKILTREDVVELQCHGPEVCLRRVLRACLEAGATLAQPGEFTLRAFLNGRLDLSQAENVEKLISXXXXXXXXXXXXGIQGGFSSLVTSVRAKCIELLTEIEARLDFDDEMPPLNLNLVMDKIHAMSQDVENAMETANYDKLLQSGLQIAIGGRPNVGK 491
            + P+  TREDVVEL CHG  + +++ L+ C+ AGA LA+PGEFTLRAFLNGRLDLSQAE++  LIS             +QG     +  +R +C+++L E+EAR+DF+D++PPL+L  +  ++ A   D++  + TA+  +LL++GL+IAI GRPNVGK
Sbjct:   77 LAPRSYTREDVVELHCHGGLMPVQQTLQLCIRAGARLAEPGEFTLRAFLNGRLDLSQAESIADLISAQSPQAAQAALGSLQGKLGHPIRQLRDRCLDILAEVEARIDFEDDLPPLDLEAIAAQLTAAGADMQAILSTADRGELLRTGLKIAIVGRPNVGK 236          
BLAST of EY676899 vs. ExPASy Swiss-Prot
Match: MNME_ANASP (tRNA modification GTPase mnmE OS=Anabaena sp. (strain PCC 7120) GN=mnmE PE=1 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 2.379e-37
Identity = 73/158 (46.20%), Postives = 110/158 (69.62%), Query Frame = 3
Query:   18 PKILTREDVVELQCHGPEVCLRRVLRACLEAGATLAQPGEFTLRAFLNGRLDLSQAENVEKLISXXXXXXXXXXXXGIQGGFSSLVTSVRAKCIELLTEIEARLDFDDEMPPLNLNLVMDKIHAMSQDVENAMETANYDKLLQSGLQIAIGGRPNVGK 491
            P+  TREDVVE  CHG  + +++VL+ CLE+GA LAQPGEFTLRAFLNGRLDL+QAE++  L+             G+QG  +  +  +RA C+++L EIEAR+DF++++PPL+   ++  I  ++ ++   + T +  +LL++GL++AI GRPNVGK
Sbjct:   77 PRSYTREDVVEFHCHGGIIAVQQVLQLCLESGARLAQPGEFTLRAFLNGRLDLTQAESIADLVGARSPQAAQTALAGLQGKLAHPIRQLRANCLDILAEIEARIDFEEDLPPLDDEAIISDIENIAAEISQLLATKDKGELLRTGLKVAIVGRPNVGK 234          
BLAST of EY676899 vs. ExPASy Swiss-Prot
Match: MNME_ACAM1 (tRNA modification GTPase mnmE OS=Acaryochloris marina (strain MBIC 11017) GN=mnmE PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 4.058e-37
Identity = 76/160 (47.50%), Postives = 109/160 (68.12%), Query Frame = 3
Query:   12 VGPKILTREDVVELQCHGPEVCLRRVLRACLEAGATLAQPGEFTLRAFLNGRLDLSQAENVEKLISXXXXXXXXXXXXGIQGGFSSLVTSVRAKCIELLTEIEARLDFDDEMPPLNLNLVMDKIHAMSQDVENAMETANYDKLLQSGLQIAIGGRPNVGK 491
            + P+  TREDVVE  CHG  + +++VL ACL+AGA LAQPGEFTLRAFLNGRLDL+QAE V  L+             G+QG  +S +  +R +C++ L E+EAR+DF+D++PPL+   V  ++  +   ++  + TA+  +LL++GL +AI GRPNVGK
Sbjct:   74 LAPRSYTREDVVEFHCHGGMIAVQQVLEACLQAGAELAQPGEFTLRAFLNGRLDLTQAEGVADLVGARSPQAAQAALAGVQGKLASPIRELRQRCLDTLAEVEARVDFEDDLPPLDEAGVQAELQDIHATLQAILATADQGELLRNGLTVAIIGRPNVGK 233          
BLAST of EY676899 vs. ExPASy Swiss-Prot
Match: MNME_ANAVT (tRNA modification GTPase mnmE OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=mnmE PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 6.922e-37
Identity = 73/158 (46.20%), Postives = 109/158 (68.99%), Query Frame = 3
Query:   18 PKILTREDVVELQCHGPEVCLRRVLRACLEAGATLAQPGEFTLRAFLNGRLDLSQAENVEKLISXXXXXXXXXXXXGIQGGFSSLVTSVRAKCIELLTEIEARLDFDDEMPPLNLNLVMDKIHAMSQDVENAMETANYDKLLQSGLQIAIGGRPNVGK 491
            P+  TREDVVE  CHG  + +++VL+ CLE GA LAQPGEFTLRAFLNGRLDL+QAE++  L+             G+QG  +  +  +RA C+++L EIEAR+DF++++PPL+   ++  I  ++ ++   + T +  +LL++GL++AI GRPNVGK
Sbjct:   81 PRSYTREDVVEFHCHGGIMAVQQVLQLCLEGGARLAQPGEFTLRAFLNGRLDLTQAESIADLVGARSPQAAQTALAGLQGKLAHPIRQLRANCLDILAEIEARIDFEEDLPPLDDEKIISDIENIAAEISQLLATKDKGELLRTGLKVAIVGRPNVGK 238          
BLAST of EY676899 vs. ExPASy Swiss-Prot
Match: MNME_THEEB (tRNA modification GTPase mnmE OS=Thermosynechococcus elongatus (strain BP-1) GN=mnmE PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 1.542e-36
Identity = 77/160 (48.12%), Postives = 106/160 (66.25%), Query Frame = 3
Query:   12 VGPKILTREDVVELQCHGPEVCLRRVLRACLEAGATLAQPGEFTLRAFLNGRLDLSQAENVEKLISXXXXXXXXXXXXGIQGGFSSLVTSVRAKCIELLTEIEARLDFDDEMPPLNLNLVMDKIHAMSQDVENAMETANYDKLLQSGLQIAIGGRPNVGK 491
            + P+  TREDVVE  CHG  + ++RVL+ C+ AGA LA PGEFTLRAFLNGRLDL+QAE+V +L++            G+ G  +  +  +R  C+ LL EIEARLDF DE+PPL+   + ++I  +   VE  + TA    L+++GL++AI GRPNVGK
Sbjct:   76 LAPRSYTREDVVEFHCHGGLIPVQRVLQLCVAAGARLADPGEFTLRAFLNGRLDLTQAESVAELVAAQSTTAAQIALAGLTGKLARPLQQIRQTCLSLLAEIEARLDFTDELPPLDPAAIAEQIRQLQHQVEAFLATAERGALIRTGLKVAIVGRPNVGK 235          
BLAST of EY676899 vs. ExPASy Swiss-Prot
Match: MNME_SYNEL (tRNA modification GTPase mnmE OS=Synechococcus elongatus GN=mnmE PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 1.542e-36
Identity = 77/160 (48.12%), Postives = 106/160 (66.25%), Query Frame = 3
Query:   12 VGPKILTREDVVELQCHGPEVCLRRVLRACLEAGATLAQPGEFTLRAFLNGRLDLSQAENVEKLISXXXXXXXXXXXXGIQGGFSSLVTSVRAKCIELLTEIEARLDFDDEMPPLNLNLVMDKIHAMSQDVENAMETANYDKLLQSGLQIAIGGRPNVGK 491
            + P+  TREDVVE  CHG  + ++RVL+ C+ AGA LA PGEFTLRAFLNGRLDL+QAE+V +L++            G+ G  +  +  +R  C+ LL EIEARLDF DE+PPL+   + ++I  +   VE  + TA    L+++GL++AI GRPNVGK
Sbjct:   76 LAPRSYTREDVVEFHCHGGLIPVQRVLQLCVAAGARLADPGEFTLRAFLNGRLDLTQAESVAELVAAQSTTAAQIALAGLTGKLARPLQQIRQTCLSLLAEIEARLDFTDELPPLDPAAIAEQIRQLQHQVEAFLATAERGALIRTGLKVAIVGRPNVGK 235          
BLAST of EY676899 vs. ExPASy Swiss-Prot
Match: MNME_SYNY3 (tRNA modification GTPase mnmE OS=Synechocystis sp. (strain PCC 6803) GN=mnmE PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 2.630e-36
Identity = 70/160 (43.75%), Postives = 112/160 (70.00%), Query Frame = 3
Query:   12 VGPKILTREDVVELQCHGPEVCLRRVLRACLEAGATLAQPGEFTLRAFLNGRLDLSQAENVEKLISXXXXXXXXXXXXGIQGGFSSLVTSVRAKCIELLTEIEARLDFDDEMPPLNLNLVMDKIHAMSQDVENAMETANYDKLLQSGLQIAIGGRPNVGK 491
            + P+  T+EDVVE QCHG  + +++VL+ CL+ GA LAQPGEF+ RAFLNGRLDL+QAE++ +L+             G+QG  +  +  +R  C+++L E+EAR+DF+D++PPL+ + +  ++  + Q +E+ + TA   +LL++GL++AI G+PNVGK
Sbjct:   75 LAPRSYTKEDVVEFQCHGGIMPVQQVLQLCLQQGARLAQPGEFSFRAFLNGRLDLTQAESISELVGAQSPQAAAIALAGLQGKLAQPIRDLRNTCLDILAEVEARIDFEDDLPPLDEDSIRQQLQNLYQQLEDILNTAQRGELLRTGLKVAIVGQPNVGK 234          
The following BLAST results are available for this feature:
BLAST of EY676899 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
MNME_TRIEI3.670e-3848.10tRNA modification GTPase mnmE OS=Trichodesmium ery... [more]
MNME_CYAP46.261e-3848.13tRNA modification GTPase mnmE OS=Cyanothece sp. (s... [more]
MNME_SYNP61.068e-3747.50tRNA modification GTPase mnmE OS=Synechococcus sp.... [more]
MNME_SYNE71.068e-3747.50tRNA modification GTPase mnmE OS=Synechococcus elo... [more]
MNME_ANASP2.379e-3746.20tRNA modification GTPase mnmE OS=Anabaena sp. (str... [more]
MNME_ACAM14.058e-3747.50tRNA modification GTPase mnmE OS=Acaryochloris mar... [more]
MNME_ANAVT6.922e-3746.20tRNA modification GTPase mnmE OS=Anabaena variabil... [more]
MNME_THEEB1.542e-3648.13tRNA modification GTPase mnmE OS=Thermosynechococc... [more]
MNME_SYNEL1.542e-3648.13tRNA modification GTPase mnmE OS=Synechococcus elo... [more]
MNME_SYNY32.630e-3643.75tRNA modification GTPase mnmE OS=Synechocystis sp.... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-401-028-D03-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY676899 ID=EY676899; Name=EY676899; organism=Citrus sinensis; type=EST; length=983bp
CCACGCGTCCGGTTGGCCCCAAGATCCTCACCCGTGAAGATGTGGTTGAG
CTTCAATGTCACGGCCCTGAAGTGTGTCTGCGCCGTGTGTTAAGAGCTTG
TTTAGAAGCTGGGGCGACCCTTGCTCAACCAGGCGAGTTCACTCTCCGCG
CCTTTCTCAATGGCCGCTTAGACCTATCTCAAGCTGAAAATGTTGAAAAG
TTAATTTCAGCAAAGTCTGTGGCTGCTGCAGATGCAGCTTTGGCAGGAAT
TCAGGGGGGCTTCTCTTCTTTGGTCACGTCAGTGAGAGCGAAGTGCATCG
AGTTGCTTACTGAGATTGAGGCTCGTTTAGATTTTGATGATGAGATGCCT
CCTCTCAATTTAAATCTGGTTATGGATAAAATACACGCAATGTCACAAGA
TGTGGAAAATGCCATGGAGACTGCCAATTATGACAAACTTCTGCAATCTG
GCTTACAAATAGCAATTGGCGGGCGACCAAATGTTGGGAAGTCTAGCCTT
CTTAATGCTTTGGAGCAAAATTGAGAGAACAATAGTTTACAAGAAAATTG
CCGGTACTACTCAAAAATGTCGTTGAAACCAATGGAAACATTATGTGGGT
GGACCTGGGGAAACTTCCTTGAAACCGCAGGGCTTAAAAAAAACTGAAAA
AAATTTGGGGAAAAAAATTGGTGGGGAAAAAGATCTGAAAACAATAACCT
TGGGGGGGGGGAGAGTTATATAAATAGAAAAAGGAGGGGGCAACTTAGAT
GGGTGGAATCTTTCAAAAAAAAAACACCAAACCTCTTATTAAAAAAATTA
CAATGCCCAAATAAAAAAAAGCTCCGCGGGGGACTCTCTCACCCCCCCCG
AGGAGTATTTCATGTGAAAATCAAGCAAAAAAAAGAAGAAGGGGGGCACC
CCCCATCATCACTAAACAACAAAGAAAAGGGGAGAAAAAAAAAGACACGC
GGAGCCAAATAAATTTTTCCGCACGAACAGAGA
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