EY676897

Overview
NameEY676897
Unique NameEY676897
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length858
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY676897 vs. ExPASy Swiss-Prot
Match: CHI1_TOBAC (Endochitinase A OS=Nicotiana tabacum GN=CHN48 PE=1 SV=2)

HSP 1 Score: 101.293 bits (251), Expect = 5.448e-28
Identity = 42/60 (70.00%), Postives = 50/60 (83.33%), Query Frame = 1
Query:   25 NPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSTNDINAGRLPGYGLTTNIINGGIECG 204
            +PV+SFKSA+WFWMT Q PKPSCH+VII  W+PS  D  A RLPG+G+ TNIINGG+ECG
Sbjct:  224 DPVISFKSALWFWMTPQSPKPSCHDVIIGRWQPSAGDRAANRLPGFGVITNIINGGLECG 283          

HSP 2 Score: 45.0542 bits (105), Expect = 5.448e-28
Identity = 16/30 (53.33%), Postives = 22/30 (73.33%), Query Frame = 2
Query:  230 NRIGFFTTFCGKFGIQPGDNLDCSNRRPYG 319
            +RIGF+  +C   G+ PGDNLDC N+R +G
Sbjct:  292 DRIGFYRRYCSILGVSPGDNLDCGNQRSFG 321          
BLAST of EY676897 vs. ExPASy Swiss-Prot
Match: CHI2_TOBAC (Endochitinase B OS=Nicotiana tabacum GN=CHN50 PE=1 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 7.095e-28
Identity = 42/60 (70.00%), Postives = 51/60 (85.00%), Query Frame = 1
Query:   25 NPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSTNDINAGRLPGYGLTTNIINGGIECG 204
            +PV+SFKSA+WFWMT Q PKPSCH+VII  W+PS+ D  A RLPG+G+ TNIINGG+ECG
Sbjct:  219 DPVISFKSALWFWMTPQSPKPSCHDVIIGRWQPSSADRAANRLPGFGVITNIINGGLECG 278          

HSP 2 Score: 45.0542 bits (105), Expect = 7.095e-28
Identity = 16/30 (53.33%), Postives = 22/30 (73.33%), Query Frame = 2
Query:  230 NRIGFFTTFCGKFGIQPGDNLDCSNRRPYG 319
            +RIGF+  +C   G+ PGDNLDC N+R +G
Sbjct:  287 DRIGFYRRYCSILGVSPGDNLDCGNQRSFG 316          
BLAST of EY676897 vs. ExPASy Swiss-Prot
Match: CHI9_ORYSJ (Chitinase 9 OS=Oryza sativa subsp. japonica GN=Cht9 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.202e-27
Identity = 44/67 (65.67%), Postives = 56/67 (83.58%), Query Frame = 1
Query:   25 NPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSTNDINAGRLPGYGLTTNIINGGIECGYVGNDAV 225
            +PV+SFK+A+WFWMT Q PKPSCH+VI  +W PS+ DI AGR+PGYG+ TNIINGG+ECG+  +D V
Sbjct:  230 DPVVSFKTALWFWMTPQSPKPSCHDVITGQWTPSSGDIAAGRVPGYGVITNIINGGLECGFGPDDRV 296          

HSP 2 Score: 38.5058 bits (88), Expect = 1.202e-27
Identity = 15/29 (51.72%), Postives = 20/29 (68.97%), Query Frame = 2
Query:  230 NRIGFFTTFCGKFGIQPGDNLDCSNRRPY 316
            NRIGF+  +C   GI  G NLDC ++RP+
Sbjct:  298 NRIGFYQRYCDVLGIGYGSNLDCYDQRPF 326          
BLAST of EY676897 vs. ExPASy Swiss-Prot
Match: CHIC_SOLLC (Basic 30 kDa endochitinase OS=Solanum lycopersicum GN=CHI9 PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.565e-27
Identity = 43/66 (65.15%), Postives = 54/66 (81.82%), Query Frame = 1
Query:   25 NPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSTNDINAGRLPGYGLTTNIINGGIECGYVGNDA 222
            +PV+SFKSAIWFWMT Q PKPSCH+VI   W+PS  D  A R+PG+G+ TNIINGG+ECG+ G+D+
Sbjct:  217 DPVISFKSAIWFWMTPQSPKPSCHDVITGRWQPSGADQAANRVPGFGVITNIINGGLECGH-GSDS 281          

HSP 2 Score: 45.8246 bits (107), Expect = 1.565e-27
Identity = 16/30 (53.33%), Postives = 23/30 (76.67%), Query Frame = 2
Query:  230 NRIGFFTTFCGKFGIQPGDNLDCSNRRPYG 319
            +RIGF+  +CG  G+ PG+NLDC N+R +G
Sbjct:  285 DRIGFYRRYCGILGVSPGENLDCGNQRSFG 314          
BLAST of EY676897 vs. ExPASy Swiss-Prot
Match: CHI3_TOBAC (Endochitinase 3 OS=Nicotiana tabacum GN=CHN14 PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 2.651e-27
Identity = 47/66 (71.21%), Postives = 53/66 (80.30%), Query Frame = 1
Query:   25 NPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSTNDINAGRLPGYGLTTNIINGGIECGYVGNDA 222
            N V+SFKSAIWFWMTAQ PKPSCH+VI   W PS  D  A RLPGYG+ TNIINGG+ECG+ G+DA
Sbjct:  229 NAVVSFKSAIWFWMTAQSPKPSCHDVITGRWTPSAADRAANRLPGYGVITNIINGGLECGH-GSDA 293          

HSP 2 Score: 40.817 bits (94), Expect = 2.651e-27
Identity = 13/29 (44.83%), Postives = 21/29 (72.41%), Query Frame = 2
Query:  230 NRIGFFTTFCGKFGIQPGDNLDCSNRRPY 316
            +RIGF+  +C   G+ PGDN+DC N++ +
Sbjct:  297 DRIGFYRRYCSILGVSPGDNIDCGNQKSF 325          
BLAST of EY676897 vs. ExPASy Swiss-Prot
Match: CHIB_ARATH (Basic endochitinase B OS=Arabidopsis thaliana GN=CHI-B PE=1 SV=3)

HSP 1 Score: 102.064 bits (253), Expect = 3.451e-27
Identity = 43/58 (74.14%), Postives = 50/58 (86.21%), Query Frame = 1
Query:   31 VLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSTNDINAGRLPGYGLTTNIINGGIECG 204
            V++FK+AIWFWMTAQPPKPSCH VI  +W+PS  D  AGRLPGYG+ TNIINGG+ECG
Sbjct:  232 VIAFKAAIWFWMTAQPPKPSCHAVIAGQWQPSDADRAAGRLPGYGVITNIINGGLECG 289          

HSP 2 Score: 41.5874 bits (96), Expect = 3.451e-27
Identity = 15/29 (51.72%), Postives = 21/29 (72.41%), Query Frame = 2
Query:  230 NRIGFFTTFCGKFGIQPGDNLDCSNRRPY 316
            +RIGF+  +C  FG+ PG NLDC N+R +
Sbjct:  298 DRIGFYQRYCNIFGVNPGGNLDCYNQRSF 326          
BLAST of EY676897 vs. ExPASy Swiss-Prot
Match: CHI2_SOLTU (Endochitinase 2 (Fragment) OS=Solanum tuberosum GN=CHTB2 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 3.455e-27
Identity = 41/64 (64.06%), Postives = 52/64 (81.25%), Query Frame = 1
Query:   31 VLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSTNDINAGRLPGYGLTTNIINGGIECGYVGNDA 222
            ++SFKSAIWFWMT Q PKPSCH+VI   W+PS  D  A R+PG+G+ TNIINGG+ECG+ G+D+
Sbjct:  213 IISFKSAIWFWMTPQSPKPSCHDVITGRWQPSGTDQAANRVPGFGVITNIINGGLECGH-GSDS 275          

HSP 2 Score: 47.3654 bits (111), Expect = 3.455e-27
Identity = 17/30 (56.67%), Postives = 23/30 (76.67%), Query Frame = 2
Query:  230 NRIGFFTTFCGKFGIQPGDNLDCSNRRPYG 319
            +RIGF+  +CG  G+ PGDNLDC N+R +G
Sbjct:  279 DRIGFYRRYCGILGVSPGDNLDCGNQRSFG 308          
BLAST of EY676897 vs. ExPASy Swiss-Prot
Match: CHI3_SOLTU (Endochitinase 3 (Fragment) OS=Solanum tuberosum GN=CHTB3 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 4.497e-27
Identity = 42/64 (65.62%), Postives = 52/64 (81.25%), Query Frame = 1
Query:   31 VLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSTNDINAGRLPGYGLTTNIINGGIECGYVGNDA 222
            V+SFKSAIWFWMT Q PKPSCH+VI   W+PS  D  A R+PG+G+ TNIINGG+ECG+ G+D+
Sbjct:  215 VISFKSAIWFWMTPQSPKPSCHDVITGRWQPSGADQAANRVPGFGVITNIINGGLECGH-GSDS 277          

HSP 2 Score: 47.3654 bits (111), Expect = 4.497e-27
Identity = 17/30 (56.67%), Postives = 23/30 (76.67%), Query Frame = 2
Query:  230 NRIGFFTTFCGKFGIQPGDNLDCSNRRPYG 319
            +RIGF+  +CG  G+ PGDNLDC N+R +G
Sbjct:  281 DRIGFYRRYCGILGVSPGDNLDCGNQRSFG 310          
BLAST of EY676897 vs. ExPASy Swiss-Prot
Match: CHI2_PEA (Endochitinase A2 OS=Pisum sativum GN=CHI2 PE=1 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 5.852e-27
Identity = 42/60 (70.00%), Postives = 49/60 (81.67%), Query Frame = 1
Query:   25 NPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSTNDINAGRLPGYGLTTNIINGGIECG 204
            +PV+SFK+A+WFWMT Q PKPSCH+VI   W PS+ D  AGRLPGYG  TNIINGG+ECG
Sbjct:  211 DPVISFKTALWFWMTPQSPKPSCHDVITGGWTPSSADRAAGRLPGYGTVTNIINGGLECG 270          

HSP 2 Score: 43.1282 bits (100), Expect = 5.852e-27
Identity = 17/30 (56.67%), Postives = 23/30 (76.67%), Query Frame = 2
Query:  230 NRIGFFTTFCGKFGIQPGDNLDCSNRRPYG 319
            +RIGF+  +C  FGI  GDNLDC ++RP+G
Sbjct:  279 DRIGFYKRYCDIFGIGYGDNLDCYSQRPFG 308          
BLAST of EY676897 vs. ExPASy Swiss-Prot
Match: CHI1_SOLTU (Endochitinase 1 (Fragment) OS=Solanum tuberosum GN=CHTB1 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 5.854e-27
Identity = 42/64 (65.62%), Postives = 52/64 (81.25%), Query Frame = 1
Query:   31 VLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSTNDINAGRLPGYGLTTNIINGGIECGYVGNDA 222
            V+SFKSAIWFWMT Q PKPSCH+VI   W+PS  D  A R+PG+G+ TNIINGG+ECG+ G+D+
Sbjct:  215 VISFKSAIWFWMTPQSPKPSCHDVITGRWQPSGVDQAANRVPGFGVITNIINGGLECGH-GSDS 277          

HSP 2 Score: 47.3654 bits (111), Expect = 5.854e-27
Identity = 17/30 (56.67%), Postives = 23/30 (76.67%), Query Frame = 2
Query:  230 NRIGFFTTFCGKFGIQPGDNLDCSNRRPYG 319
            +RIGF+  +CG  G+ PGDNLDC N+R +G
Sbjct:  281 DRIGFYRRYCGILGVSPGDNLDCGNQRSFG 310          
The following BLAST results are available for this feature:
BLAST of EY676897 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
CHI1_TOBAC5.448e-2870.00Endochitinase A OS=Nicotiana tabacum GN=CHN48 PE=1... [more]
CHI2_TOBAC7.095e-2870.00Endochitinase B OS=Nicotiana tabacum GN=CHN50 PE=1... [more]
CHI9_ORYSJ1.202e-2765.67Chitinase 9 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIC_SOLLC1.565e-2765.15Basic 30 kDa endochitinase OS=Solanum lycopersicum... [more]
CHI3_TOBAC2.651e-2771.21Endochitinase 3 OS=Nicotiana tabacum GN=CHN14 PE=3... [more]
CHIB_ARATH3.451e-2774.14Basic endochitinase B OS=Arabidopsis thaliana GN=C... [more]
CHI2_SOLTU3.455e-2764.06Endochitinase 2 (Fragment) OS=Solanum tuberosum GN... [more]
CHI3_SOLTU4.497e-2765.63Endochitinase 3 (Fragment) OS=Solanum tuberosum GN... [more]
CHI2_PEA5.852e-2770.00Endochitinase A2 OS=Pisum sativum GN=CHI2 PE=1 SV=... [more]
CHI1_SOLTU5.854e-2765.63Endochitinase 1 (Fragment) OS=Solanum tuberosum GN... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-401-028-D01-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY676897 ID=EY676897; Name=EY676897; organism=Citrus sinensis; type=EST; length=858bp
CCACGCGTCCGCTAATTGCCACTGAATCCAGTACTATCATTCAAGTCAGC
AATCTGGTTCTGGATGACTGCACAGCCACCAAAGCCATCGTGCCACGAAG
TCATTATCGACGAATGGAAACCATCAACAAATGACATAAACGCCGGCCGG
CTTCCGGGATACGGTCTAACCACAAATATAATCAACGGTGGAATTGAATG
TGGCTACGTTGGGAATGACGCTGTACGTAAACCGTATTGGGTTCTTTACC
ACTTTCTGTGGCAAGTTTGGGATTCAACCTGGTGACAATCTTGATTGCTC
CAACCGACGGCCTTATGGCCTTAATCAGATGGCACAATCAATGTGATCAT
CATGATCAACGTTTTAATAAAATAAGACTAATAAAAGCTACTTAGTGAAA
ACTTTAGATGTCACACTTGTAGGTAGGACAACTAAGCTGTTTACGCCCAT
ATTGAAAATAAATATAAATAAAAATGATCGAACAATGGGTAAATAGAAGC
TTCTCCAGAAAAAAACAAAAAAAAGAGGCGAGCGCGACAAAGAAACCAAG
CTTTAAGTAGAAGGGCGAGCAAATGAGCAAAAGTCTTATATATGTCAACA
AAATTCAAATACGCAGGGACAGAGGTATACAGAAAAATGGGGGGAAAAAG
CAGAGCATTACAATTATAAGAAACCTTAAGAACAGACACTCCTTATACGA
CGATGAGAAAGAATGAGAAAAGGCAAAAGAAGGAGACTCTTAAAACAATT
ATACAATAAAAAATAGGTAAAAGAACCACGCCCGATGACAGGAGCAAAAA
AACAAAAAAGGGATGCAAGACAACAAAAGAGAAATGAAAAAAAATGAAAA
CAGGACAA
back to top