EY676894

Overview
NameEY676894
Unique NameEY676894
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1004
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY676894 vs. ExPASy Swiss-Prot
Match: ILR3_ARATH (Transcription factor ILR3 OS=Arabidopsis thaliana GN=ILR3 PE=1 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 1.321e-29
Identity = 58/81 (71.60%), Postives = 65/81 (80.25%), Query Frame = 2
Query:  314 RFMELASILDPGRPPKMDKTVLLADAVQMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLERQVKA 556
            +FMEL +IL+PG PPK DK  +L DAV+MVTQLR EAQKLK SN  L  KI ELK EKNELRDEKQRLK EKE LE+Q+KA
Sbjct:   90 KFMELGAILEPGNPPKTDKAAILVDAVRMVTQLRGEAQKLKDSNSSLQDKIKELKTEKNELRDEKQRLKTEKEKLEQQLKA 170          

HSP 2 Score: 36.965 bits (84), Expect = 1.321e-29
Identity = 21/48 (43.75%), Postives = 25/48 (52.08%), Query Frame = 3
Query:   99 SAEFNDSFGNLDAFKETGSRKRVXXXXXXXXXXXXXXEKMRRDRLNDR 242
            SA  + S GN +A KE GS+KR               EK RRDRLND+
Sbjct:   43 SAGVDGSAGNSEASKEPGSKKRGRCESSSATSSKACREKQRRDRLNDK 90          
BLAST of EY676894 vs. ExPASy Swiss-Prot
Match: BH115_ARATH (Transcription factor bHLH115 OS=Arabidopsis thaliana GN=BHLH115 PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 8.553e-25
Identity = 50/81 (61.73%), Postives = 63/81 (77.78%), Query Frame = 2
Query:  314 RFMELASILDPGRPPKMDKTVLLADAVQMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLERQVKA 556
            +F EL+S+L+PGR PK DK  ++ DA++MV Q RDEAQKLK  N  L  KI ELK EKNELRDEKQ+LK EKE +++Q+KA
Sbjct:   85 KFTELSSVLEPGRTPKTDKVAIINDAIRMVNQARDEAQKLKDLNSSLQEKIKELKDEKNELRDEKQKLKVEKERIDQQLKA 165          

HSP 2 Score: 33.8834 bits (76), Expect = 8.553e-25
Identity = 18/49 (36.73%), Postives = 23/49 (46.94%), Query Frame = 3
Query:   96 LSAEFNDSFGNLDAFKETGSRKRVXXXXXXXXXXXXXXEKMRRDRLNDR 242
            +S E +    + D  KE  SRKR+              EK RRDRLND+
Sbjct:   37 VSVEVDGFLCDADVIKEPSSRKRIKTESCTGSNSKACREKQRRDRLNDK 85          
BLAST of EY676894 vs. ExPASy Swiss-Prot
Match: BH034_ARATH (Transcription factor bHLH34 OS=Arabidopsis thaliana GN=BHLH34 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 2.595e-19
Identity = 44/81 (54.32%), Postives = 65/81 (80.25%), Query Frame = 2
Query:  314 RFMELASILDPGRPPKMDKTVLLADAVQMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLERQVKA 556
            +FM+L+S+L+PGR PK DK+ +L DA+++V QLR EA +L+ +N+KLL +I  LK +KNELR+EK  LK EKE +E+Q+K+
Sbjct:  181 KFMDLSSVLEPGRTPKTDKSAILDDAIRVVNQLRGEAHELQETNQKLLEEIKSLKADKNELREEKLVLKAEKEKMEQQLKS 261          

HSP 2 Score: 23.0978 bits (48), Expect = 2.595e-19
Identity = 12/37 (32.43%), Postives = 18/37 (48.65%), Query Frame = 3
Query:  132 DAFKETGSRKRVXXXXXXXXXXXXXXEKMRRDRLNDR 242
            + F+E  S KR               EK+RR++LND+
Sbjct:  145 EEFEEECSGKRRRTGSCSKPGTKACREKLRREKLNDK 181          
BLAST of EY676894 vs. ExPASy Swiss-Prot
Match: BH104_ARATH (Transcription factor bHLH104 OS=Arabidopsis thaliana GN=BHLH104 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 5.150e-19
Identity = 46/81 (56.79%), Postives = 64/81 (79.01%), Query Frame = 2
Query:  314 RFMELASILDPGRPPKMDKTVLLADAVQMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLERQVKA 556
            RFM+L+S+L+PGR PK DK  +L DA++++ QLRDEA KL+ +N+KLL +I  LK EKNELR+EK  LK +KE  E+Q+K+
Sbjct:  149 RFMDLSSVLEPGRTPKTDKPAILDDAIRILNQLRDEALKLEETNQKLLEEIKSLKAEKNELREEKLVLKADKEKTEQQLKS 229          
The following BLAST results are available for this feature:
BLAST of EY676894 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
ILR3_ARATH1.321e-2971.60Transcription factor ILR3 OS=Arabidopsis thaliana ... [more]
BH115_ARATH8.553e-2561.73Transcription factor bHLH115 OS=Arabidopsis thalia... [more]
BH034_ARATH2.595e-1954.32Transcription factor bHLH34 OS=Arabidopsis thalian... [more]
BH104_ARATH5.150e-1956.79Transcription factor bHLH104 OS=Arabidopsis thalia... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-401-028-C10-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY676894 ID=EY676894; Name=EY676894; organism=Citrus sinensis; type=EST; length=1004bp
CCACGCGTCCGGATGACATTGGAGTCTCTGGTGGCGACCTCCCCTCCCTT
GATCCTCCGGAGGTTCTTTGGTCTTCTTCCACCTCAAATCCTCCTCTCAG
TGCGGAATTCAATGATTCCTTTGGCAATTTGGATGCTTTCAAGGAAACTG
GCTCCAGGAAAAGGGTGAGATCTGGATCCTGCAGTGCATCTGGTTCTAAA
GCTTGTAGAGAGAAAATGCGAAGAGATAGGCTGAATGACAGGCATGCCCT
GAATCTATAGAGCTTTTGTTTCTCTCCCTCTCTGTATTATGTACTGAATC
TGGCTTTATCTTAAGGTTCATGGAATTGGCTTCTATTCTGGATCCTGGGA
GGCCTCCTAAAATGGACAAGACAGTTTTATTGGCTGATGCTGTTCAGATG
GTGACTCAACTGCGTGATGAAGCTCAAAAACTTAAGGTGTCAAATGAAAA
GCTGTTGGGGAAGATCAATGAATTAAAGTGTGAGAAGAATGAGCTTCGTG
ACGAGAAACAAAGGCTAAAAAATGAAAAGGAAAATCTTGAGAGGCAAGTA
AAAGCCTTGAGTTCTCAGGCTTGCCTTCTTACCTCATCCTCCTCCAGTCC
CGGCTCCATTTTCCGGCCCAGGTCCAAGTTGTTGGGGGCAAAATTGGTGC
CCTTAATTTGGGTAATCCTGGAATTTTCCCAGGGGCAAGTTTCAGCCCCC
CTGCCTGCTGGCCAAATACCCCCAAGGGAATAAGGTTTTCCCCCCTCCCC
CAATTTGCTTAAATTTTGACGGGGGTTTTTTAAGGGGTCGCCCCTTCCCC
CCCCCCACCAAAAATGCCCCTTAATTTTTTGGTGAAAAAAAAAGAAATCT
CTTGGAAAAAAAAAAATCTCCGGGGGGTGTTTGTTTTTTTCCAAAAAATT
TTTTTTTTTTTTGTCTTTTTTATAAGGTTTGGGGGGGGAAGTTTCTTTTT
TAAAGAAAAATAATAAAACCCCCGGGTGGTGTTTTTTTTTTTTTTTGTTT
GGGG
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