EY728649

Overview
NameEY728649
Unique NameEY728649
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length798
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11765 contig Csv1_Contig11765:1..799. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY728649 vs. ExPASy Swiss-Prot
Match: SPD2_ARATH (Spermidine synthase 2 OS=Arabidopsis thaliana GN=SPDSYN2 PE=1 SV=2)

HSP 1 Score: 160.614 bits (405), Expect = 1.873e-39
Identity = 81/120 (67.50%), Postives = 94/120 (78.33%), Query Frame = 1
Query:  337 MAETGSAAATDFPLKRPRDDGEKEANNNNNGSVLMEMDSN----KQPDCISSVIPGWFSEISPMWPGEAHSLKVEKILXQGKSDYQNVMVFQSSTYGKVLILDGVIXLTERDXCGYQEMI 684
            M+ T  A+ TD P+KRPR     EA  +NNG   ME ++     K+P C+SS+IPGWFSEISPMWPGEAHSLKVEKIL QGKSDYQ+V+VFQS+TYGKVL+LDGVI LTERD C YQEMI
Sbjct:    1 MSSTQEASVTDLPVKRPR-----EAEEDNNGGA-METENGGGEIKEPSCMSSIIPGWFSEISPMWPGEAHSLKVEKILFQGKSDYQDVIVFQSATYGKVLVLDGVIQLTERDECAYQEMI 114          

HSP 2 Score: 23.8682 bits (50), Expect = 1.873e-39
Identity = 9/13 (69.23%), Postives = 10/13 (76.92%), Query Frame = 3
Query:  687 HLPLCSLQTRKKV 725
            HLPLCS+   KKV
Sbjct:  116 HLPLCSISNPKKV 128          
BLAST of EY728649 vs. ExPASy Swiss-Prot
Match: SPDE_SOLLC (Spermidine synthase OS=Solanum lycopersicum GN=SPDSYN PE=2 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 2.364e-36
Identity = 77/111 (69.37%), Postives = 88/111 (79.28%), Query Frame = 1
Query:  364 TDFPLKRPRDD-GEKE---ANNNNNGSVLMEMDSNKQPDCISSVIPGWFSEISPMWPGEAHSLKVEKILXQGKSDYQNVMVFQSSTYGKVLILDGVIXLTERDXCGYQEMI 684
            T+ P+KRPR++  E E   ANN+NNG      +  +    ISSV+PGWFSEISP+WPGEAHSLKVEKIL QGKSDYQNV+VFQSSTYGKVL+LDGVI LTERD C YQEMI
Sbjct:   12 TELPVKRPREEEAETEMEAANNSNNGC-----EKEESSPYISSVLPGWFSEISPLWPGEAHSLKVEKILFQGKSDYQNVLVFQSSTYGKVLVLDGVIQLTERDECAYQEMI 117          

HSP 2 Score: 23.483 bits (49), Expect = 2.364e-36
Identity = 9/13 (69.23%), Postives = 10/13 (76.92%), Query Frame = 3
Query:  687 HLPLCSLQTRKKV 725
            HLPLCS+   KKV
Sbjct:  119 HLPLCSIPNPKKV 131          
BLAST of EY728649 vs. ExPASy Swiss-Prot
Match: SPD1_ARATH (Spermidine synthase 1 OS=Arabidopsis thaliana GN=SPDSYN1 PE=1 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 6.811e-36
Identity = 75/112 (66.96%), Postives = 89/112 (79.46%), Query Frame = 1
Query:  358 AATDFPLKRPRDDGEKEANNNNNGSVLMEM---DSNKQPDCISSVIPGWFSEISPMWPGEAHSLKVEKILXQGKSDYQNVMVFQSSTYGKVLILDGVIXLTERDXCGYQEMI 684
            +ATD  LKRPR++      ++N G+  ME    D  K+P C S+VIPGWFSE+SPMWPGEAHSLKVEK+L QGKSDYQ+V+VFQS+TYGKVL+LDGVI LTERD C YQEMI
Sbjct:    7 SATD--LKRPREE------DDNGGAATMETENGDQKKEPACFSTVIPGWFSEMSPMWPGEAHSLKVEKVLFQGKSDYQDVIVFQSATYGKVLVLDGVIQLTERDECAYQEMI 110          

HSP 2 Score: 23.483 bits (49), Expect = 6.811e-36
Identity = 9/13 (69.23%), Postives = 10/13 (76.92%), Query Frame = 3
Query:  687 HLPLCSLQTRKKV 725
            HLPLCS+   KKV
Sbjct:  112 HLPLCSIPNPKKV 124          
BLAST of EY728649 vs. ExPASy Swiss-Prot
Match: SPD1_PEA (Spermidine synthase 1 OS=Pisum sativum GN=SPDSYN1 PE=2 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 2.554e-35
Identity = 76/108 (70.37%), Postives = 85/108 (78.70%), Query Frame = 1
Query:  361 ATDFPLKRPRDDGEKEANNNNNGSVLMEMDSNKQPDCISSVIPGWFSEISPMWPGEAHSLKVEKILXQGKSDYQNVMVFQSSTYGKVLILDGVIXLTERDXCGYQEMI 684
            +TD PLKR R+D   E N  ++      +    QP+ +SSVIPGWFSEISPMWPGEAHSLKVEKIL QGKSDYQ+VMVFQS+TYGKVLILDGVI LTERD C YQEMI
Sbjct:   10 STDSPLKRQRED---EVNGVSD-----TLSKEPQPNGLSSVIPGWFSEISPMWPGEAHSLKVEKILFQGKSDYQDVMVFQSATYGKVLILDGVIQLTERDECAYQEMI 109          

HSP 2 Score: 23.483 bits (49), Expect = 2.554e-35
Identity = 9/13 (69.23%), Postives = 10/13 (76.92%), Query Frame = 3
Query:  687 HLPLCSLQTRKKV 725
            HLPLCS+   KKV
Sbjct:  111 HLPLCSIPNPKKV 123          
BLAST of EY728649 vs. ExPASy Swiss-Prot
Match: SPD2_DATST (Spermidine synthase 2 OS=Datura stramonium PE=2 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 4.337e-35
Identity = 70/91 (76.92%), Postives = 78/91 (85.71%), Query Frame = 1
Query:  412 NNNNNGSVLMEMDSNKQPDCISSVIPGWFSEISPMWPGEAHSLKVEKILXQGKSDYQNVMVFQSSTYGKVLILDGVIXLTERDXCGYQEMI 684
            NNNNNG       ++K+  CISSV+PGWFSEISP+WPGEAHSLKVEKIL QGKSDYQ+VMVFQS+TYGKVL+LDGVI LTERD C YQEMI
Sbjct:    7 NNNNNGCT-----NDKESPCISSVLPGWFSEISPLWPGEAHSLKVEKILFQGKSDYQDVMVFQSTTYGKVLVLDGVIQLTERDECAYQEMI 92          

HSP 2 Score: 23.483 bits (49), Expect = 4.337e-35
Identity = 9/13 (69.23%), Postives = 10/13 (76.92%), Query Frame = 3
Query:  687 HLPLCSLQTRKKV 725
            HLPLCS+   KKV
Sbjct:   94 HLPLCSIPNPKKV 106          
BLAST of EY728649 vs. ExPASy Swiss-Prot
Match: SPDE_NICSY (Spermidine synthase OS=Nicotiana sylvestris PE=2 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 4.680e-34
Identity = 72/92 (78.26%), Postives = 78/92 (84.78%), Query Frame = 1
Query:  409 ANNNNNGSVLMEMDSNKQPDCISSVIPGWFSEISPMWPGEAHSLKVEKILXQGKSDYQNVMVFQSSTYGKVLILDGVIXLTERDXCGYQEMI 684
            AN+NNNG       +N+ P  ISSV+PGWFSEISP+WPGEAHSLKVEKIL QGKSDYQNVMVFQSSTYGKVL+LDGVI LTERD C YQEMI
Sbjct:    4 ANHNNNGC------TNESP-YISSVLPGWFSEISPLWPGEAHSLKVEKILFQGKSDYQNVMVFQSSTYGKVLVLDGVIQLTERDECAYQEMI 88          

HSP 2 Score: 23.483 bits (49), Expect = 4.680e-34
Identity = 9/13 (69.23%), Postives = 10/13 (76.92%), Query Frame = 3
Query:  687 HLPLCSLQTRKKV 725
            HLPLCS+   KKV
Sbjct:   90 HLPLCSIPNPKKV 102          
BLAST of EY728649 vs. ExPASy Swiss-Prot
Match: SPD1_DATST (Spermidine synthase 1 OS=Datura stramonium PE=2 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 7.942e-34
Identity = 68/82 (82.93%), Postives = 73/82 (89.02%), Query Frame = 1
Query:  439 MEMDSNKQPDCISSVIPGWFSEISPMWPGEAHSLKVEKILXQGKSDYQNVMVFQSSTYGKVLILDGVIXLTERDXCGYQEMI 684
            ME  +NK+   ISS++PGWFSEISP+WPGEAHSLKVEKIL QGKSDYQNVMVFQSSTYGKVLILDGVI LTERD C YQEMI
Sbjct:    1 MEEANNKESPYISSILPGWFSEISPLWPGEAHSLKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMI 82          

HSP 2 Score: 23.483 bits (49), Expect = 7.942e-34
Identity = 9/13 (69.23%), Postives = 10/13 (76.92%), Query Frame = 3
Query:  687 HLPLCSLQTRKKV 725
            HLPLCS+   KKV
Sbjct:   84 HLPLCSIPNPKKV 96          
BLAST of EY728649 vs. ExPASy Swiss-Prot
Match: SPDE_COFAR (Spermidine synthase OS=Coffea arabica PE=2 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 1.034e-33
Identity = 67/74 (90.54%), Postives = 69/74 (93.24%), Query Frame = 1
Query:  463 PDCISSVIPGWFSEISPMWPGEAHSLKVEKILXQGKSDYQNVMVFQSSTYGKVLILDGVIXLTERDXCGYQEMI 684
            PD +SSVIPGWFSEISPMWPGEAHSLKVEKIL QGKSDYQNVMVFQSSTYGKVL+LDGVI LTERD C YQEMI
Sbjct:   17 PDGVSSVIPGWFSEISPMWPGEAHSLKVEKILFQGKSDYQNVMVFQSSTYGKVLVLDGVIQLTERDECAYQEMI 90          

HSP 2 Score: 23.8682 bits (50), Expect = 1.034e-33
Identity = 9/13 (69.23%), Postives = 11/13 (84.62%), Query Frame = 3
Query:  687 HLPLCSLQTRKKV 725
            HLPLCS+ + KKV
Sbjct:   92 HLPLCSIPSPKKV 104          
BLAST of EY728649 vs. ExPASy Swiss-Prot
Match: SPD2_PEA (Spermidine synthase 2 OS=Pisum sativum GN=SPDSYN2 PE=2 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 1.345e-33
Identity = 74/114 (64.91%), Postives = 88/114 (77.19%), Query Frame = 1
Query:  352 SAAATDFPLKRPRDDGEKEANNNNNGSVLMEMDS-NKQP--DCISSVIPGWFSEISPMWPGEAHSLKVEKILXQGKSDYQNVMVFQSSTYGKVLILDGVIXLTERDXCGYQEMI 684
            S    +  +K  RDD EK +N  +  +V M+++  +K P  + +SSVIPGWFSEISPMWPGEAHSLK+EKIL QGKS+YQ VMVFQSSTYGKVL+LDGVI LTERD C YQEMI
Sbjct:    5 STVELESSMKEHRDDDEK-SNGFSVSAVSMDVEGGDKDPSGNGVSSVIPGWFSEISPMWPGEAHSLKIEKILFQGKSEYQKVMVFQSSTYGKVLVLDGVIQLTERDECAYQEMI 117          

HSP 2 Score: 23.483 bits (49), Expect = 1.345e-33
Identity = 9/13 (69.23%), Postives = 10/13 (76.92%), Query Frame = 3
Query:  687 HLPLCSLQTRKKV 725
            HLPLCS+   KKV
Sbjct:  119 HLPLCSIPNPKKV 131          
BLAST of EY728649 vs. ExPASy Swiss-Prot
Match: SPD1_HYONI (Spermidine synthase 1 OS=Hyoscyamus niger PE=2 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 2.284e-33
Identity = 69/93 (74.19%), Postives = 76/93 (81.72%), Query Frame = 1
Query:  406 EANNNNNGSVLMEMDSNKQPDCISSVIPGWFSEISPMWPGEAHSLKVEKILXQGKSDYQNVMVFQSSTYGKVLILDGVIXLTERDXCGYQEMI 684
            E  N +NG      ++ K+   ISSV+PGWFSEISP+WPGEAHSLKVEKIL QGKSDYQNVMVFQSSTYGKVL+LDGVI LTERD C YQEMI
Sbjct:    2 EVTNQSNGC----SNNEKESPYISSVLPGWFSEISPLWPGEAHSLKVEKILFQGKSDYQNVMVFQSSTYGKVLVLDGVIQLTERDECAYQEMI 90          

HSP 2 Score: 23.483 bits (49), Expect = 2.284e-33
Identity = 9/13 (69.23%), Postives = 10/13 (76.92%), Query Frame = 3
Query:  687 HLPLCSLQTRKKV 725
            HLPLCS+   KKV
Sbjct:   92 HLPLCSIPNPKKV 104          
The following BLAST results are available for this feature:
BLAST of EY728649 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
SPD2_ARATH1.873e-3967.50Spermidine synthase 2 OS=Arabidopsis thaliana GN=S... [more]
SPDE_SOLLC2.364e-3669.37Spermidine synthase OS=Solanum lycopersicum GN=SPD... [more]
SPD1_ARATH6.811e-3666.96Spermidine synthase 1 OS=Arabidopsis thaliana GN=S... [more]
SPD1_PEA2.554e-3570.37Spermidine synthase 1 OS=Pisum sativum GN=SPDSYN1 ... [more]
SPD2_DATST4.337e-3576.92Spermidine synthase 2 OS=Datura stramonium PE=2 SV... [more]
SPDE_NICSY4.680e-3478.26Spermidine synthase OS=Nicotiana sylvestris PE=2 S... [more]
SPD1_DATST7.942e-3482.93Spermidine synthase 1 OS=Datura stramonium PE=2 SV... [more]
SPDE_COFAR1.034e-3390.54Spermidine synthase OS=Coffea arabica PE=2 SV=1[more]
SPD2_PEA1.345e-3364.91Spermidine synthase 2 OS=Pisum sativum GN=SPDSYN2 ... [more]
SPD1_HYONI2.284e-3374.19Spermidine synthase 1 OS=Hyoscyamus niger PE=2 SV=... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-006-F09-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728649 ID=EY728649; Name=EY728649; organism=Citrus sinensis; type=EST; length=798bp
CCACGCGTCCGGGCATATATAAAGCGTTGCCCACCACCTTCGCACACTTT
AAACCAAGCGCAAGCGGCAGCAAACGCTAACACAAACACGAGCCGCATCT
TTGCGAAGCCAGATTTGTAACTTTTTATAATATATTCTCCCACCACTCGC
AGCTTGCAATTTTTTATTTTAATTTTTCTTTATATATAAAAGGCAAAGAG
GGACGGAGATTCTGTTTGTGTGGCGCCTCTTGACTCCCGAGAGTTGCCTC
GGCAGTCAGTTTTCATTAGAAGTGAAGTGATTGTTGGGTTTTCGGGGGTT
TGAAAGCAGAGAGAATAATCAATAATAATATCTGTTATGGCGGAAACTGG
GTCTGCTGCTGCCACTGATTTTCCGTTGAAGAGGCCGAGAGATGACGGAG
AGAAGGAGGCTAATAACAACAATAACGGGAGTGTGTTGATGGAGATGGAC
TCTAACAAACAGCCTGATTGTATCTCCTCTGTTATTCCTGGCTGGTTCTC
TGAAATCAGCCCAATGTGGCCCGGTGAGGCACATTCATTGAAGGTTGAGA
AAATCTTGTNTCAAGGGAAGTCTGATTACCAGAATGTCATGGTCTTTCAG
TCTTCAACATACGGGAAGGTTCTTATTTTGGATGGGGTGATTCANCTTAC
TGAAAGGGATGANTGTGGATATCAAGAAATGATCCTCACCTTCCACTTTG
TTCATTGCAAACCCGAAAAAAGGTCTGGTAATGGGTGGAGGAGATGGTGG
GGTTCTGCCGGAAATATCGCGTCGTCCTTCTGGGGAGAAGATGGAATC
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