EY676890

Overview
NameEY676890
Unique NameEY676890
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1011
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY676890 vs. ExPASy Swiss-Prot
Match: F91A1_DANRE (Protein FAM91A1 OS=Danio rerio GN=fam91a1 PE=2 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 6.154e-12
Identity = 34/77 (44.16%), Postives = 51/77 (66.23%), Query Frame = 2
Query:   83 PCAGLARVAFIVDANITSYLMMGSVSPGLKSHAVTLYEAGKLGHASIADLCKDLSTLEGAKFEGELQEFANHAFSLR 313
            P A   R+AF+ D+ +T++LMMG++SP LKSHAVT++E GKL   ++     +L  +E    EGE Q + +HA +LR
Sbjct:  368 PAAPTKRIAFLFDSTLTAFLMMGNLSPNLKSHAVTMFEVGKLSDETLDSFLMELEKVESTA-EGEAQRYFDHALTLR 443          
BLAST of EY676890 vs. ExPASy Swiss-Prot
Match: F91A1_HUMAN (Protein FAM91A1 OS=Homo sapiens GN=FAM91A1 PE=1 SV=3)

HSP 1 Score: 68.9366 bits (167), Expect = 5.209e-11
Identity = 38/104 (36.54%), Postives = 59/104 (56.73%), Query Frame = 2
Query:   14 QGSCLRDGDYSQQGDGTGTENYGPCA----GLARVAFIVDANITSYLMMGSVSPGLKSHAVTLYEAGKLGHASIADLCKDLSTLEGAKFEGELQEFANHAFSLR 313
            + S   D D + Q D   T +    +       R+AF+ D+ +T++LMMG++SP LKSHAVT++E GKL   S+     +L  ++    EGE Q + +HA +LR
Sbjct:  344 EASSATDTDTNSQEDPADTASVSSLSLSTGHTKRIAFLFDSTLTAFLMMGNLSPNLKSHAVTMFEVGKLSDESLDSFLIELEKVQSTG-EGEAQRYFDHALTLR 446          
BLAST of EY676890 vs. ExPASy Swiss-Prot
Match: F91A1_MOUSE (Protein FAM91A1 OS=Mus musculus GN=Fam91a1 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 6.803e-11
Identity = 38/104 (36.54%), Postives = 59/104 (56.73%), Query Frame = 2
Query:   14 QGSCLRDGDYSQQGDGTGTENYGPCA----GLARVAFIVDANITSYLMMGSVSPGLKSHAVTLYEAGKLGHASIADLCKDLSTLEGAKFEGELQEFANHAFSLR 313
            + S   D D + Q D   T +    +       R+AF+ D+ +T++LMMG++SP LKSHAVT++E GKL   S+     +L  ++    EGE Q + +HA +LR
Sbjct:  344 EASSATDTDTNSQEDPADTASVSSLSLSTGYTKRIAFLFDSTLTAFLMMGNLSPNLKSHAVTMFEVGKLSDESLDSFLIELEKVQSTG-EGEAQRYFDHALTLR 446          
The following BLAST results are available for this feature:
BLAST of EY676890 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
F91A1_DANRE6.154e-1244.16Protein FAM91A1 OS=Danio rerio GN=fam91a1 PE=2 SV=... [more]
F91A1_HUMAN5.209e-1136.54Protein FAM91A1 OS=Homo sapiens GN=FAM91A1 PE=1 SV... [more]
F91A1_MOUSE6.803e-1136.54Protein FAM91A1 OS=Mus musculus GN=Fam91a1 PE=1 SV... [more]
back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-401-028-C06-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY676890 ID=EY676890; Name=EY676890; organism=Citrus sinensis; type=EST; length=1011bp
CCACGCGTCCGCTCAGGGGTCATGTCTGCGTGATGGTGATTATAGTCAAC
AAGGAGACGGCACAGGGACAGAGAACTATGGACCATGTGCTGGCCTCGCC
CGTGTTGCTTTTATTGTAGATGCCAATATAACATCCTATCTTATGATGGG
TTCTGTTTCACCAGGCTTGAAATCTCATGCTGTAACACTATACGAAGCAG
GGAAGCTGGGTCATGCTAGCATTGCAGATCTGTGCAAGGATCTGAGTACA
TTAGAGGGAGCAAAATTTGAAGGGGAACTGCAGGAATTTGCAAATCATGC
ATTTAGTCTTCGTTGTGTCTTGGAATGCCTTCTTTCGGGCGGCGTTTCCA
CTGATGTTAAAGCAGTGGAAATTTGTGATAAATTGGACATGTCAGCTTCA
AGTACTGACGAGGCTGCTTCTCTGATTGCTGATACAACATTGACTGACAA
ATCAGAACCCTTTGTTAGCAATGAAGCCAGACACATTATTGATGATTCCA
TGAATTCGAGGCTTCAGAATGTGCATATTTTGGATGAACCCCTTTCTGGA
AATACTGATGATGAGACATCATTTTCTTAATTTATCAGAAGATAGTATTT
TGTTAAATGAAGTCCCTAAACCAAACCCAATTTCCCTGAAATGATGAAAA
AAAAAAACCCTATTGAAAAATCCGAAGTTAATAAAGGGGACTTTGAGGAA
AAAAAAAAAAAAAAATCAAATGGGAAATTTCTCCCCCTGTGAAAACCTTG
GGCCTGGCCCGGGCCCCACCAACCTTTAAAATCGGGTTGGTTCCTTCCGG
GACAAAAAAATTTTTTTTCCCCCAAAAATTCCCCCTCTCCTTGTTTCCCA
CAATTTCTTCTCCGGGCCCCAAAAAAGGGCCCAATTCCCTTTTTTGGGGC
CCCTCCCCCCCCCTTTTTTTTTTCTTTAAAAACCACCAGGGGAAGAAAAA
AAATTTGGTGAATAAAAAATTTTTTACAAACGGTTTTTTTTTTTTCTTAG
GGGGGGACAAC
back to top