EY676881 | Citrus Genome Database

Overview


Name	EY676881
Unique Name	EY676881
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	1000

Libraries


Library Name	Type
Sweet orange leaf, infected with CiLV	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

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BLAST of EY676881 vs. ExPASy Swiss-Prot
Match: CCC12_ARATH (Cyclin-C1-2 OS=Arabidopsis thaliana GN=CYCC1-2 PE=2 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 1.294e-46
Identity = 87/119 (73.11%), Postives = 107/119 (89.92%), Query Frame = 1

Query:   19 MAANFWTSSHYKQLLDQEDVDVAQPLDREKGITVEDYKLIKMQMSNYISKLAQHVKVRQRVVATAVTYMRRCYTRKSMTEYDPHLVAPTCLYLASKAEESTVQARLLVFYIKKIYSE*K 375
            MA+NFWTS+HYK+L D E+V+V  PLD ++GI+VED++LIK+ MSNYISKLAQH+K+RQRVVATAVTYMRR YTRKS+TEY+P LVAPTCLYLA KAEES V A+LLVFY+KK+Y++ K
Sbjct:    1 MASNFWTSTHYKELKDPEEVNVVHPLDAQRGISVEDFRLIKLHMSNYISKLAQHIKIRQRVVATAVTYMRRVYTRKSLTEYEPRLVAPTCLYLACKAEESVVHAKLLVFYMKKLYADEK 119

HSP 2 Score: 137.117 bits (344), Expect = 1.536e-31
Identity = 66/113 (58.41%), Postives = 87/113 (76.99%), Query Frame = 2

Query:  275 LLQPACTWHQ-KQKKAQCRPDFLFFTLKKYILNEKYRYEVKDILEMEMKILEALNYYLVVFHPYRSLVQFLQDAGMNEINMTPLSWEILNDT*KMDLILGHPPHLMALACIYI 610
            L+ P C +   K +++      L F +KK   +EK+RYE+KDILEMEMK+LEALN+YLVVFHPYRSL +FLQD+G+N+ +MT L+W ++NDT +MDLIL HPP L+ LACIYI
Sbjct:   85 LVAPTCLYLACKAEESVVHAKLLVFYMKKLYADEKFRYEIKDILEMEMKVLEALNFYLVVFHPYRSLPEFLQDSGINDTSMTHLTWGLVNDTYRMDLILIHPPFLITLACIYI 197

[Close]

BLAST of EY676881 vs. ExPASy Swiss-Prot
Match: CCC11_ARATH (Cyclin-C1-1 OS=Arabidopsis thaliana GN=CYCC1-1 PE=2 SV=2)

HSP 1 Score: 179.489 bits (454), Expect = 2.699e-44
Identity = 86/117 (73.50%), Postives = 101/117 (86.32%), Query Frame = 1

Query:   19 MAANFWTSSHYKQLLDQEDVDVAQPLDREKGITVEDYKLIKMQMSNYISKLAQHVKVRQRVVATAVTYMRRCYTRKSMTEYDPHLVAPTCLYLASKAEESTVQARLLVFYIKKIYSE 369
            MAANFW SSHYKQLLD E+VDV   LD+E+GI+++D+KLIK  MSN+I KLAQH+KVRQRVVATA+TYMRR Y RKSM E++P LVA TCLYLASKAEES VQAR LVFYIK++Y +
Sbjct:    1 MAANFWNSSHYKQLLDPEEVDVVHDLDKERGISIDDFKLIKFHMSNHIMKLAQHIKVRQRVVATAITYMRRVYIRKSMVEFEPRLVALTCLYLASKAEESIVQARNLVFYIKRLYPD 117

HSP 2 Score: 125.946 bits (315), Expect = 3.542e-28
Identity = 59/91 (64.84%), Postives = 75/91 (82.42%), Query Frame = 2

Query:  338 LFFTLKKYILNEKYRYEVKDILEMEMKILEALNYYLVVFHPYRSLVQFLQDAGMNEINMTPLSWEILNDT*KMDLILGHPPHLMALACIYI 610
            L F +K+   +E  +YE+KDIL MEMK+LEAL+YYLVVFHPYRSL +FLQDA +N++NM  ++W I+NDT KMDLIL HPP+ +ALACIYI
Sbjct:  107 LVFYIKRLYPDEYNKYELKDILGMEMKVLEALDYYLVVFHPYRSLSEFLQDAALNDVNMNQITWGIVNDTYKMDLILVHPPYRIALACIYI 197

[Close]

BLAST of EY676881 vs. ExPASy Swiss-Prot
Match: CCC11_ORYSJ (Cyclin-C1-1 OS=Oryza sativa subsp. japonica GN=Os09g0504400 PE=2 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 2.285e-43
Identity = 87/114 (76.32%), Postives = 99/114 (86.84%), Query Frame = 1

Query:   19 MAANFWTSSHYKQLLDQEDVDVAQPLDREKGITVEDYKLIKMQMSNYISKLAQHVKVRQRVVATAVTYMRRCYTRKSMTEYDPHLVAPTCLYLASKAEESTVQARLLVFYIKKI 360
            MAANFWTSSH KQLLDQEDVD     D ++GIT+E+++L+K+ MS +I +LAQ VKVRQRV+ATAVTY RR YTRKSMTEYDP LVAPTCLYLASK EESTVQARLLVFYIKK+
Sbjct:    1 MAANFWTSSHCKQLLDQEDVDKVPQADSDRGITLEEFRLVKIHMSFHIWRLAQQVKVRQRVIATAVTYFRRVYTRKSMTEYDPRLVAPTCLYLASKVEESTVQARLLVFYIKKM 114

HSP 2 Score: 124.79 bits (312), Expect = 7.890e-28
Identity = 64/114 (56.14%), Postives = 86/114 (75.44%), Query Frame = 2

Query:  275 LLQPACTW-HQKQKKAQCRPDFLFFTLKKYILN-EKYRYEVKDILEMEMKILEALNYYLVVFHPYRSLVQFLQDAGMNEINMTPLSWEILNDT*KMDLILGHPPHLMALACIYI 610
            L+ P C +   K +++  +   L F +KK   + EKYR+E+KDILEMEMK+LEAL+YYLVV+HPYR L+Q LQDAG+ +  +T  +W I+NDT KMDLIL HPP+++ALACIYI
Sbjct:   85 LVAPTCLYLASKVEESTVQARLLVFYIKKMCASDEKYRFEIKDILEMEMKLLEALDYYLVVYHPYRPLLQLLQDAGITD--LTQFAWGIVNDTYKMDLILIHPPYMIALACIYI 196

[Close]

BLAST of EY676881 vs. ExPASy Swiss-Prot
Match: CCNC_XENTR (Cyclin-C OS=Xenopus tropicalis GN=ccnc PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 4.555e-35
Identity = 46/100 (46.00%), Postives = 68/100 (68.00%), Query Frame = 1

Query:   19 MAANFWTSSHYKQ-LLDQEDVDVAQPLDREKGITVEDYKLIKMQMSNYISKLAQHVKVRQRVVATAVTYMRRCYTRKSMTEYDPHLVAPTCLYLASKAEE 315
            MA NFW SSHY Q +LD++D+   +  D  K ++ E+Y  +++  +N I  L +H+K+RQ+V+ATA  Y +R Y R S+   DP L+APTC++LASK EE
Sbjct:    1 MAGNFWQSSHYLQWILDKQDLLKERQKDL-KFLSEEEYWKLQIFFTNVIQALGEHLKLRQQVIATATVYFKRFYARYSLKSIDPVLMAPTCVFLASKVEE 99

HSP 2 Score: 80.4925 bits (197), Expect = 4.555e-35
Identity = 35/84 (41.67%), Postives = 59/84 (70.24%), Query Frame = 2

Query:  359 YILNEKYRYEVKDILEMEMKILEALNYYLVVFHPYRSLVQFLQDAGMNEINMTPLSWEILNDT*KMDLILGHPPHLMALACIYI 610
            Y   +++ Y +  ILE E  +LE ++  L+V+HPYR L+Q++QD G  ++ + PL+W I+NDT + DL L +PP ++ALAC+++
Sbjct:  122 YAFPKEFPYRMNHILECEFYLLELMDCCLIVYHPYRPLLQYVQDMGQEDM-LLPLAWRIVNDTYRTDLCLLYPPFMIALACLHV 204

[Close]

BLAST of EY676881 vs. ExPASy Swiss-Prot
Match: CCNC_XENLA (Cyclin-C OS=Xenopus laevis GN=ccnc PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 4.555e-35
Identity = 46/100 (46.00%), Postives = 68/100 (68.00%), Query Frame = 1

Query:   19 MAANFWTSSHYKQ-LLDQEDVDVAQPLDREKGITVEDYKLIKMQMSNYISKLAQHVKVRQRVVATAVTYMRRCYTRKSMTEYDPHLVAPTCLYLASKAEE 315
            MA NFW SSHY Q +LD++D+   +  D  K ++ E+Y  +++  +N I  L +H+K+RQ+V+ATA  Y +R Y R S+   DP L+APTC++LASK EE
Sbjct:    1 MAGNFWQSSHYLQWILDKQDLLKERQKDL-KFLSEEEYWKLQIFFTNVIQALGEHLKLRQQVIATATVYFKRFYARYSLKSIDPVLMAPTCVFLASKVEE 99

HSP 2 Score: 80.4925 bits (197), Expect = 4.555e-35
Identity = 35/84 (41.67%), Postives = 59/84 (70.24%), Query Frame = 2

Query:  359 YILNEKYRYEVKDILEMEMKILEALNYYLVVFHPYRSLVQFLQDAGMNEINMTPLSWEILNDT*KMDLILGHPPHLMALACIYI 610
            Y   +++ Y +  ILE E  +LE ++  L+V+HPYR L+Q++QD G  ++ + PL+W I+NDT + DL L +PP ++ALAC+++
Sbjct:  122 YAFPKEFPYRMNHILECEFYLLELMDCCLIVYHPYRPLLQYVQDMGQEDM-LLPLAWRIVNDTYRTDLCLLYPPFMIALACLHV 204

[Close]

BLAST of EY676881 vs. ExPASy Swiss-Prot
Match: CCNC_HUMAN (Cyclin-C OS=Homo sapiens GN=CCNC PE=1 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 4.555e-35
Identity = 46/100 (46.00%), Postives = 68/100 (68.00%), Query Frame = 1

Query:   19 MAANFWTSSHYKQ-LLDQEDVDVAQPLDREKGITVEDYKLIKMQMSNYISKLAQHVKVRQRVVATAVTYMRRCYTRKSMTEYDPHLVAPTCLYLASKAEE 315
            MA NFW SSHY Q +LD++D+   +  D  K ++ E+Y  +++  +N I  L +H+K+RQ+V+ATA  Y +R Y R S+   DP L+APTC++LASK EE
Sbjct:    1 MAGNFWQSSHYLQWILDKQDLLKERQKDL-KFLSEEEYWKLQIFFTNVIQALGEHLKLRQQVIATATVYFKRFYARYSLKSIDPVLMAPTCVFLASKVEE 99

HSP 2 Score: 80.4925 bits (197), Expect = 4.555e-35
Identity = 35/84 (41.67%), Postives = 59/84 (70.24%), Query Frame = 2

Query:  359 YILNEKYRYEVKDILEMEMKILEALNYYLVVFHPYRSLVQFLQDAGMNEINMTPLSWEILNDT*KMDLILGHPPHLMALACIYI 610
            Y   +++ Y +  ILE E  +LE ++  L+V+HPYR L+Q++QD G  ++ + PL+W I+NDT + DL L +PP ++ALAC+++
Sbjct:  122 YAFPKEFPYRMNHILECEFYLLELMDCCLIVYHPYRPLLQYVQDMGQEDM-LLPLAWRIVNDTYRTDLCLLYPPFMIALACLHV 204

[Close]

BLAST of EY676881 vs. ExPASy Swiss-Prot
Match: CCNC_CHICK (Cyclin-C OS=Gallus gallus GN=CCNC PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 4.555e-35
Identity = 46/100 (46.00%), Postives = 68/100 (68.00%), Query Frame = 1

Query:   19 MAANFWTSSHYKQ-LLDQEDVDVAQPLDREKGITVEDYKLIKMQMSNYISKLAQHVKVRQRVVATAVTYMRRCYTRKSMTEYDPHLVAPTCLYLASKAEE 315
            MA NFW SSHY Q +LD++D+   +  D  K ++ E+Y  +++  +N I  L +H+K+RQ+V+ATA  Y +R Y R S+   DP L+APTC++LASK EE
Sbjct:    1 MAGNFWQSSHYLQWILDKQDLLKERQKDL-KFLSEEEYWKLQIFFTNVIQALGEHLKLRQQVIATATVYFKRFYARYSLKSIDPVLMAPTCVFLASKVEE 99

HSP 2 Score: 80.4925 bits (197), Expect = 4.555e-35
Identity = 35/84 (41.67%), Postives = 59/84 (70.24%), Query Frame = 2

Query:  359 YILNEKYRYEVKDILEMEMKILEALNYYLVVFHPYRSLVQFLQDAGMNEINMTPLSWEILNDT*KMDLILGHPPHLMALACIYI 610
            Y   +++ Y +  ILE E  +LE ++  L+V+HPYR L+Q++QD G  ++ + PL+W I+NDT + DL L +PP ++ALAC+++
Sbjct:  122 YAFPKEFPYRMNHILECEFYLLELMDCCLIVYHPYRPLLQYVQDMGQEDM-LLPLAWRIVNDTYRTDLCLLYPPFMIALACLHV 204

[Close]

BLAST of EY676881 vs. ExPASy Swiss-Prot
Match: CCNC_BOVIN (Cyclin-C OS=Bos taurus GN=CCNC PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 4.555e-35
Identity = 46/100 (46.00%), Postives = 68/100 (68.00%), Query Frame = 1

Query:   19 MAANFWTSSHYKQ-LLDQEDVDVAQPLDREKGITVEDYKLIKMQMSNYISKLAQHVKVRQRVVATAVTYMRRCYTRKSMTEYDPHLVAPTCLYLASKAEE 315
            MA NFW SSHY Q +LD++D+   +  D  K ++ E+Y  +++  +N I  L +H+K+RQ+V+ATA  Y +R Y R S+   DP L+APTC++LASK EE
Sbjct:    1 MAGNFWQSSHYLQWILDKQDLLKERQKDL-KFLSEEEYWKLQIFFTNVIQALGEHLKLRQQVIATATVYFKRFYARYSLKSIDPVLMAPTCVFLASKVEE 99

HSP 2 Score: 80.4925 bits (197), Expect = 4.555e-35
Identity = 34/84 (40.48%), Postives = 60/84 (71.43%), Query Frame = 2

Query:  359 YILNEKYRYEVKDILEMEMKILEALNYYLVVFHPYRSLVQFLQDAGMNEINMTPLSWEILNDT*KMDLILGHPPHLMALACIYI 610
            Y   +++ Y++  +LE E  +LE ++  L+V+HPYR L+Q++QD G  ++ + PL+W I+NDT + DL L +PP ++ALAC+++
Sbjct:  122 YAFPKEFPYKMNHVLECEFYLLELMDCCLIVYHPYRPLLQYVQDMGQEDM-LLPLAWRIVNDTYRTDLCLLYPPFMIALACLHV 204

[Close]

BLAST of EY676881 vs. ExPASy Swiss-Prot
Match: CCNC_MOUSE (Cyclin-C OS=Mus musculus GN=Ccnc PE=2 SV=3)

HSP 1 Score: 85.8853 bits (211), Expect = 3.773e-34
Identity = 45/100 (45.00%), Postives = 67/100 (67.00%), Query Frame = 1

Query:   19 MAANFWTSSHYKQ-LLDQEDVDVAQPLDREKGITVEDYKLIKMQMSNYISKLAQHVKVRQRVVATAVTYMRRCYTRKSMTEYDPHLVAPTCLYLASKAEE 315
            MA NFW SSHY Q +LD++D+   +  D  K ++ E+Y  +++  +N I  L +H+K+RQ+V+ATA  Y +R   R S+   DP L+APTC++LASK EE
Sbjct:    1 MAGNFWQSSHYLQWILDKQDLLKERQKDL-KFLSEEEYWKLQIFFTNVIQALGEHLKLRQQVIATATVYFKRFDARYSLKSIDPVLMAPTCVFLASKVEE 99

HSP 2 Score: 81.2629 bits (199), Expect = 3.773e-34
Identity = 35/84 (41.67%), Postives = 59/84 (70.24%), Query Frame = 2

Query:  359 YILNEKYRYEVKDILEMEMKILEALNYYLVVFHPYRSLVQFLQDAGMNEINMTPLSWEILNDT*KMDLILGHPPHLMALACIYI 610
            Y   +++ Y +  ILE E  +LE ++  L+V+HPYR L+Q++QD G  ++ + PL+W I+NDT + DL L +PP ++ALAC+++
Sbjct:  122 YAFPKEFPYRMNHILECEFYLLELMDCCLIVYHPYRPLLQYVQDMGQEDV-LLPLAWRIVNDTYRTDLCLLYPPFMIALACLHV 204

[Close]

BLAST of EY676881 vs. ExPASy Swiss-Prot
Match: CCNC_RAT (Cyclin-C OS=Rattus norvegicus GN=Ccnc PE=2 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 1.086e-33
Identity = 46/103 (44.66%), Postives = 66/103 (64.08%), Query Frame = 1

Query:   19 MAANFWTSSHYKQ-LLDQEDVDVAQPLDREKGI---TVEDYKLIKMQMSNYISKLAQHVKVRQRVVATAVTYMRRCYTRKSMTEYDPHLVAPTCLYLASKAEE 315
            MA NFW SSHY Q +LD+E         R+K +   + E+Y  +++  +N I  L +H+K+RQ+V+ATA  Y +R Y R S+   DP L+APTC++LASK EE
Sbjct:    1 MAGNFWQSSHYLQWILDKE---------RQKDLKFLSEEEYWKLQIFFTNVIQALGEHLKLRQQVIATATVYFKRFYARYSLKSIDPVLMAPTCVFLASKVEE 94

HSP 2 Score: 80.4925 bits (197), Expect = 1.086e-33
Identity = 35/84 (41.67%), Postives = 59/84 (70.24%), Query Frame = 2

Query:  359 YILNEKYRYEVKDILEMEMKILEALNYYLVVFHPYRSLVQFLQDAGMNEINMTPLSWEILNDT*KMDLILGHPPHLMALACIYI 610
            Y   +++ Y +  ILE E  +LE ++  L+V+HPYR L+Q++QD G  ++ + PL+W I+NDT + DL L +PP ++ALAC+++
Sbjct:  117 YASPKEFPYRMNHILECEFYLLELMDCCLIVYHPYRPLLQYVQDMGQEDV-LLPLAWRIVNDTYRTDLCLLYPPFMIALACLHV 199

The following BLAST results are available for this feature:

BLAST of EY676881 vs. ExPASy Swiss-Prot

BLAST of EY676881 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41


Match Name	E-value	Identity	Description
CCC12_ARATH	1.294e-46	73.11	Cyclin-C1-2 OS=Arabidopsis thaliana GN=CYCC1-2 PE=...	[more]
CCC11_ARATH	2.699e-44	73.50	Cyclin-C1-1 OS=Arabidopsis thaliana GN=CYCC1-1 PE=...	[more]
CCC11_ORYSJ	2.285e-43	76.32	Cyclin-C1-1 OS=Oryza sativa subsp. japonica GN=Os0...	[more]
CCNC_XENTR	4.555e-35	46.00	Cyclin-C OS=Xenopus tropicalis GN=ccnc PE=2 SV=1	[more]
CCNC_XENLA	4.555e-35	46.00	Cyclin-C OS=Xenopus laevis GN=ccnc PE=2 SV=1	[more]
CCNC_HUMAN	4.555e-35	46.00	Cyclin-C OS=Homo sapiens GN=CCNC PE=1 SV=2	[more]
CCNC_CHICK	4.555e-35	46.00	Cyclin-C OS=Gallus gallus GN=CCNC PE=3 SV=1	[more]
CCNC_BOVIN	4.555e-35	46.00	Cyclin-C OS=Bos taurus GN=CCNC PE=2 SV=1	[more]
CCNC_MOUSE	3.773e-34	45.00	Cyclin-C OS=Mus musculus GN=Ccnc PE=2 SV=3	[more]
CCNC_RAT	1.086e-33	44.66	Cyclin-C OS=Rattus norvegicus GN=Ccnc PE=2 SV=2	[more]

Pages

Properties


Property Name	Value
Genbank description	CS00-C1-401-028-B07-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>EY676881 ID=EY676881; Name=EY676881; organism=Citrus sinensis; type=EST; length=1000bp
CAAAGGTGGGGTGAAAAAATGGCTGCCAATTTCTGGACATCGTCGCACTA
CAAACAGCTTCTGGACCAAGAAGACGTGGATGTGGCGCAACCTCTTGACA
GAGAAAAGGGCATCACTGTTGAAGATTACAAGCTCATTAAGATGCAGATG
TCCAACTATATATCGAAATTGGCCCAACATGTCAAAGTGAGGCAAAGGGT
TGTAGCCACTGCAGTTACATATATGAGACGCTGTTACACCAGAAAGAGTA
TGACAGAATATGATCCCCATCTTGTTGCTCCAACCTGCTTGTACTTGGCA
TCAAAAGCAGAAGAAAGCACAGTGCAGGCCCGACTTCTTGTTTTTTACAT
TAAAAAAATATATTCTGAATGAAAAGTATCGTTACGAAGTCAAGGATATA
CTTGAAATGGAAATGAAGATTTTAGAAGCTCTTAACTATTACTTAGTTGT
ATTCCATCCTTACCGTTCACTTGTGCAGTTTTTGCAGGACGCTGGCATGA
ATGAAATAAATATGACCCCTTTATCTTGGGAAATTCTGAACGACACATAA
AAGATGGACCTTATTCTTGGTCATCCTCCCCATTTGATGGCTTTGGCTTG
CATATATATTGGCCGGTGTAATTAGAGAAAAAAATAACCCCCCCTGGGTT
GGAAAACCTTCGGGGTTGATTTAAAGGGGGGGGAAAAACATTCTCAAGGG
GAAAAATTTAAAATTTTTTTAGAAAACCCAAAAACGGGGTTAAGGGGGGG
AAAAAAAAAAAACCCGCCCCTTTCGGGAAATTGGGGTTTTAAAAAAAATT
TAAAGAAAAAAGGGGAGACCCCGGCGGGGTTTTTGGCAAAAAACCCCCCC
CCCTGCGGGTGGTTTATACCACAAAAAAGGGGGAGAGAATGATGATATAA
AAATAAAAAAAAAATTATGGGGGGGGCGGGGGGGGTGGGGGGGGGGCCCG
ACAGCGGAAAAAAAAAATCCACACCTCACCACTCCTTTGTGTTTTTTGTT