EY676880

Overview
NameEY676880
Unique NameEY676880
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1073
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY676880_ssr993 microsatellite EY676880_ssr993:993..1004. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY676880 vs. ExPASy Swiss-Prot
Match: CB13_SOLLC (Chlorophyll a-b binding protein 8, chloroplastic OS=Solanum lycopersicum GN=CAB8 PE=3 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 1.928e-43
Identity = 89/113 (78.76%), Postives = 97/113 (85.84%), Query Frame = 2
Query:   95 ETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLWFASKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAMHRKILAKQASI 433
            E ARQI+G+R +QS T   RK SFVVRAASTPPVKQGA+R LWFASKQSLSYLDG LPGD+GFDPLGLSDPEGTGGFIEPKWLAYGEVINGR+AMLGA GA+  +IL K   I
Sbjct:   17 EAARQIIGSRISQSVT---RKASFVVRAASTPPVKQGANRQLWFASKQSLSYLDGRLPGDFGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRFAMLGAAGAIAPEILGKAGLI 126          

HSP 2 Score: 69.707 bits (169), Expect = 3.319e-11
Identity = 48/99 (48.48%), Postives = 58/99 (58.59%), Query Frame = 1
Query:  379 VGSCGSHAPENSGKAGLNPQETALAWSQTGVIPPTGTINYRGKTFKPFFVLENATSGDFAETRKIPKRGKIPEIKGEGKISSGF*KKIWEGFRGNPGFP 675
            +G+ G+ APE  GKAGL PQETALAW QTGVIPP GT NY    +   FVLE A  G FAE R+     K P   G+ +   G  K +  G  G+P +P
Sbjct:  109 LGAAGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADNY-TLFVLEMALMG-FAEHRRFQDWAK-PGSMGK-QYFLGLEKGL--GGSGDPAYP 201          
BLAST of EY676880 vs. ExPASy Swiss-Prot
Match: CB23_PEA (Chlorophyll a-b binding protein 3, chloroplastic OS=Pisum sativum GN=lhca3 PE=1 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 6.856e-41
Identity = 86/110 (78.18%), Postives = 92/110 (83.64%), Query Frame = 2
Query:   95 ETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGA-DRPLWFASKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAMHRKILAK 421
            E  RQ   ARS  S  G SRKG  +VRAA+TPPVKQG  DRPLWFASKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEP+WLAYGEVINGR+AMLGAVGA+  + L K
Sbjct:   17 EAVRQSFRARSLPSSVGCSRKG--LVRAAATPPVKQGGVDRPLWFASKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPRWLAYGEVINGRFAMLGAVGAIAPEYLGK 124          

HSP 2 Score: 71.2478 bits (173), Expect = 1.141e-11
Identity = 46/101 (45.54%), Postives = 56/101 (55.45%), Query Frame = 1
Query:  379 VGSCGSHAPENSGKAGLNPQETALAWSQTGVIPPTGTINYRGKTFKPFFVLENATSGDFAETRKIPKRGKIPEIKGEGKISSGF*KKIWEGF--RGNPGFP 675
            +G+ G+ APE  GK GL PQETALAW QTGVIPP GT NY    +   FVLE A  G FAE R+     K       G +   +   + +GF   GNP +P
Sbjct:  111 LGAVGAIAPEYLGKVGLIPQETALAWFQTGVIPPAGTYNYWADNY-TLFVLEMALMG-FAEHRRFQDWAK------PGSMGKQYFLGLEKGFGGSGNPAYP 203          
BLAST of EY676880 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 6.048e-13
Identity = 47/110 (42.73%), Postives = 58/110 (52.73%), Query Frame = 2
Query:  110 ILGARSAQSPTGSS-RKGSFVV----RAASTPPVKQGADRPLWFASKQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAMHRKILAK 421
            I+GA  A    G   R   F+     R+ +   V    DRPLWF       +LDGSLPGD+GFDPLGL SDPE        KW A  E+++ R+AMLGA G    + L K
Sbjct:   26 IVGATKASFLGGKRLRVSKFIAPVGSRSVAVSAVAADPDRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPESL------KWNAQAELVHSRWAMLGAAGIFIPEFLTK 129          
BLAST of EY676880 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 2.298e-12
Identity = 40/84 (47.62%), Postives = 51/84 (60.71%), Query Frame = 2
Query:  173 RAASTPPVKQGADRPLWFASKQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAMHRKILAK 421
            R+A+T  V    DRPLWF       +LDGSLPGD+GFDPLGL SDPE        +W    E+++ R+AMLGA G    ++L K
Sbjct:   52 RSATTVCVAADPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGLASDPESL------RWNQQAELVHCRWAMLGAAGIFIPELLTK 129          
The following BLAST results are available for this feature:
BLAST of EY676880 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
CB13_SOLLC1.928e-4378.76Chlorophyll a-b binding protein 8, chloroplastic O... [more]
CB23_PEA6.856e-4178.18Chlorophyll a-b binding protein 3, chloroplastic O... [more]
CB12_PETHY6.048e-1342.73Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB12_SOLLC2.298e-1247.62Chlorophyll a-b binding protein 7, chloroplastic O... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-401-028-B06-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY676880 ID=EY676880; Name=EY676880; organism=Citrus sinensis; type=EST; length=1073bp
ATTTATCGTATTGAAGTCGAGAAACAAGAGGAAAAAAGAAAATTAAAAAA
TGGCAACCCAAGCTTTGGTTTCATCATCTCTTACATCTTCAGTGGAGACT
GCGAGACAAATTCTTGGAGCAAGATCAGCTCAATCCCCAACTGGGTCATC
AAGAAAAGGTTCCTTTGTTGTTAGGGCAGCTTCTACTCCTCCTGTTAAGC
AAGGAGCAGACAGACCGTTGTGGTTTGCATCCAAACAAAGCCTTTCATAC
TTGGATGGCAGCCTCCCCGGAGACTATGGATTCGACCCACTTGGTCTCTC
AGACCCTGAAGGCACAGGAGGGTTCATTGAGCCAAAATGGCTGGCCTACG
GCGAGGTCATCAACGGTCGTTATGCCATGTTGGGAGCTGTGGGAGCCATG
CACCGGAAAATTCTGGCAAAGCAGGCCTCAATCCGCAAGAAACTGCCCTG
GCCTGGTCCCAAACCGGTGTGATTCCCCCCACGGGAACAATCAACTACCG
GGGCAAAACCTTTAAACCCTTTTTCGTCCTGGAAAATGCCACCTCAGGGG
ATTTTGCCGAAACCCGAAAAATTCCAAAAAGGGGGAAAATCCCAGAAATA
AAGGGGGAGGGAAAAATTTCCTCCGGATTTTAAAAAAAAATTTGGGAGGG
GTTCCGGGGAAATCCGGGTTTTCCCCGGGGAAAAACCCCTTTTTTCAACC
CCCCTGGGGGTTTTGGGGGAAAAAAAAAAAAAAACCAAAGGGAAGGATTT
TTTTCCGCCCCCGGGGGGAAGGGAGAAAAAAGAGGAAAAAAAGGGGGGGG
AGGGGTGTGGGCGAAACTTTGGGGGGGTTTTTTTTTTTTTTTTGAAGGGG
GGGGTTTGGTTTTAAAAAAAGGGAGGGGGGGGGGGGGGTCCCTCTTCACC
ACAAAAAAAAAACATCTTTTTTATTGAAGAAATTATTTGATTTTTGGGGG
GTGGGTGGGATGTATCATTTGTCTTTTGTTCCTTTCTCCCACACAACAAC
AACACAACAAAAAACAAAAGAGGAAGATATTTTGTTGTTTTGTTTTTTTT
TGTTTTGTGTTTTTTTTTTTTTT
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