FC871125

Overview
NameFC871125
Unique NameFC871125
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length782
Libraries
Library NameType
AbsCFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6581 contig Csv1_Contig6581:1..782. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC871125 vs. ExPASy Swiss-Prot
Match: TBCD_MOUSE (Tubulin-specific chaperone D OS=Mus musculus GN=Tbcd PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.186e-15
Identity = 46/145 (31.72%), Postives = 79/145 (54.48%), Query Frame = 1
Query:  100 DRVIVPTLKTIESLFSKRIF--LNMEVHTPIFCAGVLDSLAVELKATKDFSKLYAGIAILGYIASVSDPISTRAFSYLLNFLGHRFPKIRKASAEQVYLVLLQNGNILEEDKTEKALEIIGETCWEGDMNVVKHQRLELYNLAGV 528
            DRV V  LK ++ L +   F     E + P FC  +L     E+K +KD  KL + IA+L  +   +  +  +    L   LGH FP IRK++A QVY ++L   ++++ +  ++ + ++ +T W+ ++ VV+ QR  L +L GV
Sbjct: 1040 DRVSVSLLKMLDQLLANGCFDIFTAEENHP-FCVKLLTLCKEEIKKSKDIQKLRSSIAVLCGMVQFNGDVRKKILLQLFLLLGHPFPVIRKSTASQVYEMVLTYSDLVDAEVLDEVMSVLSDTAWDAELPVVREQRNRLCDLLGV 1183          
BLAST of FC871125 vs. ExPASy Swiss-Prot
Match: TBCD_HUMAN (Tubulin-specific chaperone D OS=Homo sapiens GN=TBCD PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.155e-14
Identity = 49/146 (33.56%), Postives = 77/146 (52.74%), Query Frame = 1
Query:  100 DRVIVPTLKTIESLFSKR---IFLNMEVHTPIFCAGVLDSLAVELKATKDFSKLYAGIAILGYIASVSDPISTRAFSYLLNFLGHRFPKIRKASAEQVYLVLLQNGNILEEDKTEKALEIIGETCWEGDMNVVKHQRLELYNLAGV 528
            +RV VP LKT++ + +     IF   E H   F   +L     E+K +KD  KL +GIA+   +      +  +A   L   L HRFP IRK +A QVY  LL   +++  D  ++ + ++ +T W+ ++ VV+ QR  L +L GV
Sbjct: 1037 ERVSVPLLKTLDHVLTHGCFDIFTTEEDHP--FAVKLLALCKKEIKNSKDIQKLLSGIAVFCGMVQFPGDVRRQALLQLCLLLCHRFPLIRKTTASQVYETLLTYSDVVGADVLDEVVTVLSDTAWDAELAVVREQRNRLCDLLGV 1180          
BLAST of FC871125 vs. ExPASy Swiss-Prot
Match: TBCD_BOVIN (Tubulin-specific chaperone D OS=Bos taurus GN=TBCD PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 9.154e-12
Identity = 46/146 (31.51%), Postives = 74/146 (50.68%), Query Frame = 1
Query:  100 DRVIVPTLKTIESLFSKR---IFLNMEVHTPIFCAGVLDSLAVELKATKDFSKLYAGIAILGYIASVSDPISTRAFSYLLNFLGHRFPKIRKASAEQVYLVLLQNGNILEEDKTEKALEIIGETCWEGDMNVVKHQRLELYNLAGV 528
            DRV VP LKT++ + +     IF   E H   FC  +L     E+K +KD  KL + IA+   +      +  +    L   L H FP IRK +A QVY ++L   +++     ++ + ++  T W+ ++ VV+ QR  L +L GV
Sbjct: 1045 DRVSVPLLKTLDQMLANGCFDIFTAQENHP--FCVKLLALCKEEIKKSKDVQKLRSSIAVFCGLVQFPGDVRRKVLLQLFLLLCHPFPVIRKNTASQVYEMVL-TYDVVPTAVLDEVMAVLSSTAWDAELPVVRAQRNRLCDLLGV 1187          
The following BLAST results are available for this feature:
BLAST of FC871125 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
TBCD_MOUSE5.186e-1531.72Tubulin-specific chaperone D OS=Mus musculus GN=Tb... [more]
TBCD_HUMAN1.155e-1433.56Tubulin-specific chaperone D OS=Homo sapiens GN=TB... [more]
TBCD_BOVIN9.154e-1231.51Tubulin-specific chaperone D OS=Bos taurus GN=TBCD... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAK2AA06FM1 AbsCFruit1 Citrus sinensis cDNA clone KN0AAK2AA06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC871125 ID=FC871125; Name=FC871125; organism=Citrus sinensis; type=EST; length=782bp
CTTCAAGCGGGTGAGACTGAAGACCTTGATGCAAGAAGCTCCAGAGAATA
CATGCTATATAATGACATCCTTTGGGTTCTTCAACACTATAGGAGATGTG
ACAGAGTGATAGTTCCCACTTTGAAGACTATTGAGAGCCTTTTCAGCAAG
AGGATATTCTTAAATATGGAGGTTCATACACCAATCTTCTGTGCTGGTGT
TCTGGATTCCCTGGCGGTGGAACTGAAAGCCACCAAGGACTTCTCCAAAC
TCTATGCAGGTATCGCAATACTTGGATATATTGCTTCAGTTTCAGATCCC
ATCAGCACCCGAGCGTTCTCTTATCTTCTCAATTTCCTTGGCCATAGATT
CCCCAAGATTCGAAAAGCTTCAGCAGAACAGGTTTACCTTGTCCTCCTTC
AAAATGGAAATATTTTGGAAGAAGACAAGACAGAGAAAGCACTAGAAATT
ATTGGTGAAACTTGCTGGGAAGGTGACATGAATGTAGTAAAGCACCAAAG
GTTAGAATTGTATAATTTGGCAGGTGTGGGTGTGGGAGTACTCAACAATA
CCAACAAAATAACAAATGACGATGGTGAAAAGTGGCCTACTGCAACTGAT
GAACATGCGTCATATTCCTCTTTGGTTGGGTCATGTGGGTTCTGACTTGT
AAATTATCAATCTGTTGTATATCATTTGCTTGCTCTTTGTTATGATATTA
AACCTTGCAGTTTGCTTGTACAACAAAAGATAGACTTTTATTCTTGCTTA
AACTTGATTACAGGGAATGTGCTGTTGAAGCT
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