FC871116

Overview
NameFC871116
Unique NameFC871116
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length480
Libraries
Library NameType
AbsCFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1951 contig Csv1_Contig1951:42..521. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC871116 vs. ExPASy Swiss-Prot
Match: QCR9_SOLTU (Cytochrome b-c1 complex subunit 9 OS=Solanum tuberosum PE=1 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 4.273e-23
Identity = 49/72 (68.06%), Postives = 58/72 (80.56%), Query Frame = 3 
Query:   72 MEYTTKRSQGGLLEGLYRVIMRRNSIYVTFIIAGAFAGERAVDYGVRKIWEHNNVGKRYEDIPVLGQRQSEE 287
            ME   +RS GG+LEG YR++MRR  +YVTF+IAGA  GERAVDYGV+ +WE NNVGKRYEDI VLGQR  +E
Sbjct:    1 MESAARRSGGGVLEGFYRLVMRRTPVYVTFVIAGALLGERAVDYGVKTLWEKNNVGKRYEDISVLGQRPVDE 72
The following BLAST results are available for this feature:
BLAST of FC871116 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
QCR9_SOLTU4.273e-2368.06Cytochrome b-c1 complex subunit 9 OS=Solanum tuber... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAK3CH02FM1 AbsCFruit1 Citrus sinensis cDNA clone KN0AAK3CH02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC871116 ID=FC871116; Name=FC871116; organism=Citrus sinensis; type=EST; length=480bp
CTCTGCGAACCCTATATCAACCACTGTATTACAGATCAATCAGAGCGACT
CGAATTCCTGAGCGAACAGCCATGGAGTATACAACCAAACGAAGCCAAGG
AGGCCTCCTCGAAGGTCTTTACAGAGTCATTATGCGCCGCAACTCCATCT
ACGTAACCTTCATCATCGCCGGTGCTTTCGCTGGTGAACGGGCTGTGGAT
TATGGGGTTCGCAAAATCTGGGAGCACAACAATGTCGGGAAACGATATGA
AGACATTCCAGTTTTGGGGCAAAGGCAATCAGAAGAGTAGTACCTCTCCT
GTTCATTCTGAAGTTTTATATAAAAAATTTGGAAGGGGCGTCCAATGTAA
TGGATAGCTGTTTTATGTTGCAATAAATTTTTTGTATGCTTGAGTGCATC
AGACGTGTTTTTCAAGCTTGGTTTCAATCAAATAGGTTTTGGAGCTATTG
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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