CN189621

Overview
NameCN189621
Unique NameCN189621
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length714
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8429 contig Csv1_Contig8429:1223..1936. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN189621 vs. ExPASy Swiss-Prot
Match: RAN1B_LOTJA (GTP-binding nuclear protein Ran1B (Fragment) OS=Lotus japonicus GN=RAN1B PE=2 SV=1)

HSP 1 Score: 248.825 bits (634), Expect = 2.089e-65
Identity = 121/136 (88.97%), Postives = 122/136 (89.71%), Query Frame = -3 
Query:  305 GQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXASQPLPDDDDDAFE 712
            GQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQID              ASQPLPDDDDDAF+
Sbjct:   74 GQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQPLPDDDDDAFD 209
[Close]
BLAST of CN189621 vs. ExPASy Swiss-Prot
Match: RAN1A_LOTJA (GTP-binding nuclear protein Ran1A (Fragment) OS=Lotus japonicus GN=RAN1A PE=2 SV=1)

HSP 1 Score: 248.825 bits (634), Expect = 2.089e-65
Identity = 121/136 (88.97%), Postives = 122/136 (89.71%), Query Frame = -3 
Query:  305 GQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXASQPLPDDDDDAFE 712
            GQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQID              ASQPLPDDDDDAF+
Sbjct:   74 GQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAQAASQPLPDDDDDAFD 209
[Close]
BLAST of CN189621 vs. ExPASy Swiss-Prot
Match: RAN_VICFA (GTP-binding nuclear protein Ran/TC4 OS=Vicia faba PE=2 SV=1)

HSP 1 Score: 245.743 bits (626), Expect = 1.769e-64
Identity = 120/136 (88.24%), Postives = 121/136 (88.97%), Query Frame = -3 
Query:  305 GQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXASQPLPDDDDDAFE 712
            GQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD NLHFVESPALAPPEVQID              A+QPLPDDDDDAFE
Sbjct:   86 GQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDANLHFVESPALAPPEVQIDIALQQRHENEILEAANQPLPDDDDDAFE 221
[Close]
BLAST of CN189621 vs. ExPASy Swiss-Prot
Match: RANA1_TOBAC (GTP-binding nuclear protein Ran-A1 OS=Nicotiana tabacum GN=RAN-A1 PE=2 SV=1)

HSP 1 Score: 245.743 bits (626), Expect = 1.769e-64
Identity = 119/136 (87.50%), Postives = 121/136 (88.97%), Query Frame = -3 
Query:  305 GQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXASQPLPDDDDDAFE 712
            GQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQID              ASQPLPDDDD+ F+
Sbjct:   86 GQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQPLPDDDDETFD 221
[Close]
BLAST of CN189621 vs. ExPASy Swiss-Prot
Match: RAN3_ARATH (GTP-binding nuclear protein Ran-3 OS=Arabidopsis thaliana GN=RAN3 PE=1 SV=2)

HSP 1 Score: 245.358 bits (625), Expect = 2.310e-64
Identity = 120/136 (88.24%), Postives = 120/136 (88.24%), Query Frame = -3 
Query:  305 GQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXASQPLPDDDDDAFE 712
            GQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD NLHFVESPALAPPEVQID              ASQPLPDDDDD FE
Sbjct:   86 GQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDANLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQPLPDDDDDTFE 221
[Close]
BLAST of CN189621 vs. ExPASy Swiss-Prot
Match: RAN2_SOLLC (GTP-binding nuclear protein Ran2 OS=Solanum lycopersicum GN=RAN2 PE=2 SV=1)

HSP 1 Score: 243.817 bits (621), Expect = 6.721e-64
Identity = 118/136 (86.76%), Postives = 120/136 (88.24%), Query Frame = -3 
Query:  305 GQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXASQPLPDDDDDAFE 712
            GQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD NLHFVESPALAPPEVQID               +QPLPDDDD+AFE
Sbjct:   86 GQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDGNLHFVESPALAPPEVQIDLAAQALHEQELQAALNQPLPDDDDEAFE 221
[Close]
BLAST of CN189621 vs. ExPASy Swiss-Prot
Match: RAN2_ARATH (GTP-binding nuclear protein Ran-2 OS=Arabidopsis thaliana GN=RAN2 PE=1 SV=3)

HSP 1 Score: 243.047 bits (619), Expect = 1.146e-63
Identity = 118/136 (86.76%), Postives = 120/136 (88.24%), Query Frame = -3 
Query:  305 GQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXASQPLPDDDDDAFE 712
            GQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD NLHFVESPALAPPEV +D              A+QPLPDDDDDAFE
Sbjct:   86 GQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDQNLHFVESPALAPPEVHLDIAAQQQNEADLAAAAAQPLPDDDDDAFE 221
[Close]
BLAST of CN189621 vs. ExPASy Swiss-Prot
Match: RAN1_SOLLC (GTP-binding nuclear protein Ran1 OS=Solanum lycopersicum GN=RAN1 PE=2 SV=1)

HSP 1 Score: 241.891 bits (616), Expect = 2.554e-63
Identity = 118/136 (86.76%), Postives = 120/136 (88.24%), Query Frame = -3 
Query:  305 GQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXASQPLPDDDDDAFE 712
            GQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD NLHFVESPALAPPEV ID              A+QPLPDDDD+AFE
Sbjct:   86 GQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDGNLHFVESPALAPPEVHIDLAAQALHEEELQQAANQPLPDDDDEAFE 221
[Close]
BLAST of CN189621 vs. ExPASy Swiss-Prot
Match: RAN1_ARATH (GTP-binding nuclear protein Ran-1 OS=Arabidopsis thaliana GN=RAN1 PE=1 SV=1)

HSP 1 Score: 240.736 bits (613), Expect = 5.690e-63
Identity = 117/136 (86.03%), Postives = 119/136 (87.50%), Query Frame = -3 
Query:  305 GQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXASQPLPDDDDDAFE 712
            GQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD NLHFVE+PALAPPEV ID              A+QPLPDDDDD FE
Sbjct:   86 GQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDQNLHFVETPALAPPEVHIDIADQQKNEAELLQAAAQPLPDDDDDIFE 221
[Close]
BLAST of CN189621 vs. ExPASy Swiss-Prot
Match: RANB1_TOBAC (GTP-binding nuclear protein Ran-B1 OS=Nicotiana tabacum GN=RAN-B1 PE=2 SV=1)

HSP 1 Score: 239.195 bits (609), Expect = 1.655e-62
Identity = 117/136 (86.03%), Postives = 119/136 (87.50%), Query Frame = -3 
Query:  305 GQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXASQPLPDDDDDAFE 712
            GQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD NLHFVESPALAPPEVQID              A+  LPDDDD+AFE
Sbjct:   86 GQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDANLHFVESPALAPPEVQIDLAAQQLHEQELLQAAAHALPDDDDEAFE 221
The following BLAST results are available for this feature:
BLAST of CN189621 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
RAN1B_LOTJA2.089e-6588.97GTP-binding nuclear protein Ran1B (Fragment) OS=Lo... [more]
RAN1A_LOTJA2.089e-6588.97GTP-binding nuclear protein Ran1A (Fragment) OS=Lo... [more]
RAN_VICFA1.769e-6488.24GTP-binding nuclear protein Ran/TC4 OS=Vicia faba ... [more]
RANA1_TOBAC1.769e-6487.50GTP-binding nuclear protein Ran-A1 OS=Nicotiana ta... [more]
RAN3_ARATH2.310e-6488.24GTP-binding nuclear protein Ran-3 OS=Arabidopsis t... [more]
RAN2_SOLLC6.721e-6486.76GTP-binding nuclear protein Ran2 OS=Solanum lycope... [more]
RAN2_ARATH1.146e-6386.76GTP-binding nuclear protein Ran-2 OS=Arabidopsis t... [more]
RAN1_SOLLC2.554e-6386.76GTP-binding nuclear protein Ran1 OS=Solanum lycope... [more]
RAN1_ARATH5.690e-6386.03GTP-binding nuclear protein Ran-1 OS=Arabidopsis t... [more]
RANB1_TOBAC1.655e-6286.03GTP-binding nuclear protein Ran-B1 OS=Nicotiana ta... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0002C14_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0002C14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189621 ID=CN189621; Name=CN189621; organism=Citrus sinensis; type=EST; length=714bp
TTTTTTTTTTTTTTTTTGGAAATACAAAACTTATGCATAAAAGTATTGGA
ATGGCATAATCCACGTCACTGAAACATCATTCCAGTAATAAGAAAACTCC
CAAAAAAAAACAAGCATAAAAAGAGTCTCCAACAAGTATCTAAAGGTACA
ACCTAACTACTATAATCCATTGTTCTCGATGGTCACCCCTACGCTGATAA
CCAAATCTCCGCCATGTGTTGAAAATTTCCAAAATAACAGCATTTTTAAG
TCAAGCAGCAGTATGAGAGGTTGCGCCTACACCCGTCCAAGCAGTTCCTC
TCTACTCAAATGCATCATCATCGTCATCAGGAAGAGGCTGGCTAGCTGCT
GCGGCAAGCTCGGCTTCATGTTGTTGCTGTGCAGCTAAGTCAATCTGTAC
TTCTGGAGGAGCGAGAGCAGGAGATTCCACGAAGTGCAAATTTGGGTCCC
CAGCAAGCTTCCTGGCAAGGTACAAGAAAGGTTTCTCAAAATTGTAGTTG
CTCTTGGCAGAAATCTCATAGTACTGTAGATTCTTCTTCCTGTGGAAGGT
AACCTGCTTTGCCTTGACTTGCCTATTCTTCACATCAACCTTGTTCCCAC
AGAGAACAATCGGTATATTTTCACACACCCGGCAAAGATCACGGTGCCAA
GTGGGAACATTCTTGTATGTCAATCGGGCAGTAACATCAAACATAATGAT
GGCACATTGCCCAT
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