CN189610

Overview
NameCN189610
Unique NameCN189610
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length388
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2728 contig Csv1_Contig2728:292..679. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN189610 vs. ExPASy Swiss-Prot
Match: GI1L3_ARATH (Probable gibberellin receptor GID1L3 OS=Arabidopsis thaliana GN=GID1L3 PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 6.324e-18
Identity = 52/127 (40.94%), Postives = 74/127 (58.27%), Query Frame = 1
Query:    7 LPIILHFHGGGFCVNQADWYMYYHVYTKLAKSVPAICVSVYLRRAPEHRLPAAFDDGFEALLWLRSLSLAQAQARENNWLTEHVDFQ-RVFLIGDSSGGNVVHEVAARACDADLSPLRVAGAIPIHP 384
            +P+I+ FHGG F  + A+  +Y  +  +L     A+ VSV  RRAPE+R P A+DDG+  L W+ S          ++WL    D + R+FL GDSSGGN+VH VA RA +   S + V G I ++P
Sbjct:  104 VPVIVFFHGGSFAHSSANSAIYDTLCRRLVGLCGAVVVSVNYRRAPENRYPCAYDDGWAVLKWVNS----------SSWLRSKKDSKVRIFLAGDSSGGNIVHNVAVRAVE---SRIDVLGNILLNP 217          
BLAST of CN189610 vs. ExPASy Swiss-Prot
Match: GID1_ORYSJ (Gibberellin receptor GID1 OS=Oryza sativa subsp. japonica GN=GID1 PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 9.132e-17
Identity = 46/109 (42.20%), Postives = 59/109 (54.13%), Query Frame = 1
Query:   10 PIILHFHGGGFCVNQADWYMYYHVYTKLAKSVPAICVSVYLRRAPEHRLPAAFDDGFEALLWLRSLSLAQAQARENNWLTEHVDFQRVFLIGDSSGGNVVHEVAARACD 336
            P+I+ FHGG F  + A   +Y  +  +  K    + VSV  RRAPEHR P A+DDG+ AL W+ S    ++               RVFL GDSSGGN+ H VA RA D
Sbjct:  114 PVIIFFHGGSFVHSSASSTIYDSLCRRFVKLSKGVVVSVNYRRAPEHRYPCAYDDGWTALKWVMSQPFMRSGGDAQ---------ARVFLSGDSSGGNIAHHVAVRAAD 213          
BLAST of CN189610 vs. ExPASy Swiss-Prot
Match: GI1L2_ARATH (Probable gibberellin receptor GID1L2 OS=Arabidopsis thaliana GN=GID1L2 PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 9.132e-17
Identity = 48/126 (38.10%), Postives = 70/126 (55.56%), Query Frame = 1
Query:    7 LPIILHFHGGGFCVNQADWYMYYHVYTKLAKSVPAICVSVYLRRAPEHRLPAAFDDGFEALLWLRSLSLAQAQARENNWLTEHVDFQRVFLIGDSSGGNVVHEVAARACDADLSPLRVAGAIPIHP 384
            +P+++ FHGG F  + A+  +Y     +L      + VSV  RR+PEHR P A+DDG+ AL W++S    Q+    N +         V+L GDSSGGN+ H VA RA +     ++V G I +HP
Sbjct:  106 VPVLIFFHGGSFTHSSANSAIYDTFCRRLVTICGVVVVSVDYRRSPEHRYPCAYDDGWNALNWVKSRVWLQSGKDSNVY---------VYLAGDSSGGNIAHNVAVRATN---EGVKVLGNILLHP 219          
BLAST of CN189610 vs. ExPASy Swiss-Prot
Match: GI1L1_ARATH (Probable gibberellin receptor GID1L1 OS=Arabidopsis thaliana GN=GID1L1 PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 7.730e-16
Identity = 51/127 (40.16%), Postives = 70/127 (55.12%), Query Frame = 1
Query:    7 LPIILHFHGGGFCVNQADWYMYYHVYTKLAKSVPAICVSVYLRRAPEHRLPAAFDDGFEALLWLRSLSLAQAQARENNWLTEHVDFQ-RVFLIGDSSGGNVVHEVAARACDADLSPLRVAGAIPIHP 384
            +P+IL FHGG F  + A+  +Y  +  +L      + VSV  RRAPE+  P A+DDG+ AL W+ S S          WL    D +  +FL GDSSGGN+ H VA RA +   S + V G I ++P
Sbjct:  106 VPVILFFHGGSFAHSSANSAIYDTLCRRLVGLCKCVVVSVNYRRAPENPYPCAYDDGWIALNWVNSRS----------WLKSKKDSKVHIFLAGDSSGGNIAHNVALRAGE---SGIDVLGNILLNP 219          
The following BLAST results are available for this feature:
BLAST of CN189610 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
GI1L3_ARATH6.324e-1840.94Probable gibberellin receptor GID1L3 OS=Arabidopsi... [more]
GID1_ORYSJ9.132e-1742.20Gibberellin receptor GID1 OS=Oryza sativa subsp. j... [more]
GI1L2_ARATH9.132e-1738.10Probable gibberellin receptor GID1L2 OS=Arabidopsi... [more]
GI1L1_ARATH7.730e-1640.16Probable gibberellin receptor GID1L1 OS=Arabidopsi... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS06_0002C07_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0002C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189610 ID=CN189610; Name=CN189610; organism=Citrus sinensis; type=EST; length=388bp
AAGAAGCTACCAATCATCCTTCACTTTCATGGGGGTGGTTTTTGCGTTAA
CCAAGCTGATTGGTACATGTACTATCACGTTTACACGAAGCTTGCAAAAT
CTGTCCCGGCTATCTGTGTCTCCGTCTATCTCCGGCGGGCCCCGGAGCAC
CGCCTCCCGGCCGCTTTCGACGATGGTTTCGAAGCCCTCCTTTGGCTCCG
GTCACTATCACTGGCTCAGGCTCAGGCTCGGGAGAATAATTGGCTGACTG
AACATGTGGATTTTCAACGCGTCTTCCTCATTGGAGACAGCTCCGGAGGG
AACGTAGTGCATGAAGTGGCGGCACGTGCATGTGACGCGGACTTGAGCCC
GTTGCGTGTGGCCGGAGCGATTCCGATTCATCCGGGTT
back to top