CN189606

Overview
NameCN189606
Unique NameCN189606
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length325
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2225 contig Csv1_Contig2225:526..850. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN189606 vs. ExPASy Swiss-Prot
Match: UBC28_ARATH (Ubiquitin carrier protein E2 28 OS=Arabidopsis thaliana GN=UBC28 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.429e-17
Identity = 39/41 (95.12%), Postives = 41/41 (100.00%), Query Frame = -2
Query:  202 SLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYAMG 324
            SLLTDPNPDDPLVPEIAHMYK+D+AKYESTARSWTQKYAMG
Sbjct:  108 SLLTDPNPDDPLVPEIAHMYKTDRAKYESTARSWTQKYAMG 148          
BLAST of CN189606 vs. ExPASy Swiss-Prot
Match: UBC4_SOLLC (Ubiquitin-conjugating enzyme E2-17 kDa OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 5.411e-17
Identity = 38/41 (92.68%), Postives = 41/41 (100.00%), Query Frame = -2
Query:  202 SLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYAMG 324
            SLLTDPNPDDPLVPEIAHMYK+D+AKYE+TARSWTQKYAMG
Sbjct:  108 SLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYAMG 148          
BLAST of CN189606 vs. ExPASy Swiss-Prot
Match: UBC11_ARATH (Ubiquitin-conjugating enzyme E2 11 OS=Arabidopsis thaliana GN=UBC11 PE=2 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 5.411e-17
Identity = 38/41 (92.68%), Postives = 41/41 (100.00%), Query Frame = -2
Query:  202 SLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYAMG 324
            SLLTDPNPDDPLVPEIAHMYK+D++KYESTARSWTQKYAMG
Sbjct:  108 SLLTDPNPDDPLVPEIAHMYKTDRSKYESTARSWTQKYAMG 148          
BLAST of CN189606 vs. ExPASy Swiss-Prot
Match: UBC10_ARATH (Ubiquitin-conjugating enzyme E2 10 OS=Arabidopsis thaliana GN=UBC10 PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 5.411e-17
Identity = 39/41 (95.12%), Postives = 40/41 (97.56%), Query Frame = -2
Query:  202 SLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYAMG 324
            SLLTDPNPDDPLVPEIAHMYK+DK KYESTARSWTQKYAMG
Sbjct:  108 SLLTDPNPDDPLVPEIAHMYKTDKNKYESTARSWTQKYAMG 148          
BLAST of CN189606 vs. ExPASy Swiss-Prot
Match: UBC9_ARATH (SUMO-conjugating enzyme UBC9 OS=Arabidopsis thaliana GN=UBC9 PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.206e-16
Identity = 38/41 (92.68%), Postives = 40/41 (97.56%), Query Frame = -2
Query:  202 SLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYAMG 324
            SLLTDPNPDDPLVPEIAHMYK+DK KYESTAR+WTQKYAMG
Sbjct:  108 SLLTDPNPDDPLVPEIAHMYKTDKNKYESTARTWTQKYAMG 148          
BLAST of CN189606 vs. ExPASy Swiss-Prot
Match: UBC8_ARATH (Ubiquitin-conjugating enzyme E2 8 OS=Arabidopsis thaliana GN=UBC8 PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.206e-16
Identity = 37/41 (90.24%), Postives = 41/41 (100.00%), Query Frame = -2
Query:  202 SLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYAMG 324
            SLLTDPNPDDPLVPEIAHMYK+D+AKYE+TAR+WTQKYAMG
Sbjct:  108 SLLTDPNPDDPLVPEIAHMYKTDRAKYEATARNWTQKYAMG 148          
BLAST of CN189606 vs. ExPASy Swiss-Prot
Match: UBC30_ARATH (Ubiquitin carrier protein E2 30 OS=Arabidopsis thaliana GN=UBC30 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 5.983e-16
Identity = 36/41 (87.80%), Postives = 40/41 (97.56%), Query Frame = -2
Query:  202 SLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYAMG 324
            SLLTDPNPDDPLVPEIAH+YK+D+ KYESTA+SWTQKYAMG
Sbjct:  108 SLLTDPNPDDPLVPEIAHIYKTDRVKYESTAQSWTQKYAMG 148          
BLAST of CN189606 vs. ExPASy Swiss-Prot
Match: UBC12_ARATH (Probable ubiquitin-conjugating enzyme E2 12 OS=Arabidopsis thaliana GN=UBC12 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.878e-15
Identity = 35/41 (85.37%), Postives = 39/41 (95.12%), Query Frame = -2
Query:  202 SLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYAMG 324
            SLLTDPNP+DPLVPEIAH+YK DK+KYESTA+ WTQKYAMG
Sbjct:  109 SLLTDPNPNDPLVPEIAHLYKVDKSKYESTAQKWTQKYAMG 149          
BLAST of CN189606 vs. ExPASy Swiss-Prot
Match: UBC29_ARATH (Ubiquitin carrier protein E2 29 OS=Arabidopsis thaliana GN=UBC29 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.128e-14
Identity = 34/40 (85.00%), Postives = 38/40 (95.00%), Query Frame = -2
Query:  205 SLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYAM 324
            SLLTDPNPDDPLVPEIAH+YK+DK KYE+ ARSWTQKYA+
Sbjct:  108 SLLTDPNPDDPLVPEIAHIYKTDKTKYEAMARSWTQKYAL 147          
BLAST of CN189606 vs. ExPASy Swiss-Prot
Match: UBC1_COLGL (Ubiquitin-conjugating enzyme E2-16 kDa OS=Colletotrichum gloeosporioides GN=UBC1 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.128e-13
Identity = 30/40 (75.00%), Postives = 39/40 (97.50%), Query Frame = -2
Query:  205 SLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYAM 324
            S+LTDPNPD+PLVPEIAH+YK+D+A+YE+TAR WT+KYA+
Sbjct:  108 SMLTDPNPDEPLVPEIAHVYKTDRARYEATAREWTRKYAI 147          
The following BLAST results are available for this feature:
BLAST of CN189606 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
UBC28_ARATH2.429e-1795.12Ubiquitin carrier protein E2 28 OS=Arabidopsis tha... [more]
UBC4_SOLLC5.411e-1792.68Ubiquitin-conjugating enzyme E2-17 kDa OS=Solanum ... [more]
UBC11_ARATH5.411e-1792.68Ubiquitin-conjugating enzyme E2 11 OS=Arabidopsis ... [more]
UBC10_ARATH5.411e-1795.12Ubiquitin-conjugating enzyme E2 10 OS=Arabidopsis ... [more]
UBC9_ARATH1.206e-1692.68SUMO-conjugating enzyme UBC9 OS=Arabidopsis thalia... [more]
UBC8_ARATH1.206e-1690.24Ubiquitin-conjugating enzyme E2 8 OS=Arabidopsis t... [more]
UBC30_ARATH5.983e-1687.80Ubiquitin carrier protein E2 30 OS=Arabidopsis tha... [more]
UBC12_ARATH3.878e-1585.37Probable ubiquitin-conjugating enzyme E2 12 OS=Ara... [more]
UBC29_ARATH1.128e-1485.00Ubiquitin carrier protein E2 29 OS=Arabidopsis tha... [more]
UBC1_COLGL2.128e-1375.00Ubiquitin-conjugating enzyme E2-16 kDa OS=Colletot... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0002C04_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0002C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189606 ID=CN189606; Name=CN189606; organism=Citrus sinensis; type=EST; length=325bp
GACGCTACATTCCATCAAAGGAGCTTCAAACACAAACATTCAACCTTAAC
ATAAAAACGTCCCGCCCTTGCAACTCCCAACACCATTCTAAAACACCAAC
GTCTGCCCTCCCCAAAGCAAGTTAAAGAAAATAGATAGACAACACACACA
ACATATTTCAATAAATGTGTTCCTTTTTCTGCAATATCCTAACAACCTTC
ATCCCATGGCATACTTCTGTGTCCAGCTCCTGGCCGTGGATTCATATTTG
GCCTTGTCGGACTTGTACATGTGGGCAATCTCCGGTACAAGAGGGTCGTC
AGGATTTGGATCAGTAAGCAAGGAG
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