CN189602

Overview
NameCN189602
Unique NameCN189602
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length684
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7124 contig Csv1_Contig7124:1072..1755. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN189602 vs. ExPASy Swiss-Prot
Match: EF1A_ORYSJ (Elongation factor 1-alpha OS=Oryza sativa subsp. japonica GN=REFA1 PE=2 SV=2)

HSP 1 Score: 211.46 bits (537), Expect = 3.440e-54
Identity = 102/105 (97.14%), Postives = 105/105 (100.00%), Query Frame = -2
Query:  369 VIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKDPSG 683
            VIIMNHPGQIGNGYAPVLDCHTSHIAVKF+ELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFS+YPPLGRFAVRDMRQTVAVGVIKNVEKKDP+G
Sbjct:  332 VIIMNHPGQIGNGYAPVLDCHTSHIAVKFAELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKNVEKKDPTG 436          
BLAST of CN189602 vs. ExPASy Swiss-Prot
Match: EF1A_MAIZE (Elongation factor 1-alpha OS=Zea mays GN=EF1A PE=3 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 2.913e-53
Identity = 100/105 (95.24%), Postives = 104/105 (99.05%), Query Frame = -2
Query:  369 VIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKDPSG 683
            VIIMNHPGQIGNGYAPVLDCHTSHIAVKF+ELVTKIDRRSGKELEKEPKFLKNGDAGMVKM+PTKPMVVETFS YPPLGRFAVRDMRQTVAVGVIK+VEKKDP+G
Sbjct:  332 VIIMNHPGQIGNGYAPVLDCHTSHIAVKFAELVTKIDRRSGKELEKEPKFLKNGDAGMVKMVPTKPMVVETFSQYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG 436          
BLAST of CN189602 vs. ExPASy Swiss-Prot
Match: EF1A_TOBAC (Elongation factor 1-alpha OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 4.968e-53
Identity = 98/105 (93.33%), Postives = 105/105 (100.00%), Query Frame = -2
Query:  369 VIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKDPSG 683
            VIIMNHPGQIGNGYAPVLDCHTSHIAVKF+E++TKIDRRSGKE+EKEPKFLKNGDAGMVKMIPTKPMVVETFS+YPPLGRFAVRDMRQTVAVGVIKNV+KKDP+G
Sbjct:  332 VIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKEIEKEPKFLKNGDAGMVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKNVDKKDPTG 436          
BLAST of CN189602 vs. ExPASy Swiss-Prot
Match: EF1A_VICFA (Elongation factor 1-alpha OS=Vicia faba PE=2 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 6.488e-53
Identity = 98/105 (93.33%), Postives = 105/105 (100.00%), Query Frame = -2
Query:  369 VIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKDPSG 683
            VIIMNHPGQIGNGYAPVLDCHTSHIAVKF+EL+TKIDRRSGKE+EKEPKFLKNGDAGMVKMIPTKPMVVETF++YPPLGRFAVRDMRQTVAVGVIK+VEKKDP+G
Sbjct:  332 VIIMNHPGQIGNGYAPVLDCHTSHIAVKFAELITKIDRRSGKEIEKEPKFLKNGDAGMVKMIPTKPMVVETFAEYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG 436          
BLAST of CN189602 vs. ExPASy Swiss-Prot
Match: EF1A_PEA (Elongation factor 1-alpha OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 6.488e-53
Identity = 98/105 (93.33%), Postives = 105/105 (100.00%), Query Frame = -2
Query:  369 VIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKDPSG 683
            VIIMNHPGQIGNGYAPVLDCHTSHIAVKF+EL+TKIDRRSGKE+EKEPKFLKNGDAGMVKMIPTKPMVVETF++YPPLGRFAVRDMRQTVAVGVIK+VEKKDP+G
Sbjct:  332 VIIMNHPGQIGNGYAPVLDCHTSHIAVKFAELITKIDRRSGKEIEKEPKFLKNGDAGMVKMIPTKPMVVETFAEYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG 436          
BLAST of CN189602 vs. ExPASy Swiss-Prot
Match: EF1A_SOYBN (Elongation factor 1-alpha OS=Glycine max GN=TEFS1 PE=3 SV=2)

HSP 1 Score: 206.838 bits (525), Expect = 8.474e-53
Identity = 99/105 (94.29%), Postives = 104/105 (99.05%), Query Frame = -2
Query:  369 VIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKDPSG 683
            VII+NHPGQIGNGYAPVLDCHTSHIAVKF+EL+TKIDRRSGKELEKEPKFLKNGDAG VKMIPTKPMVVETFS+YPPLGRFAVRDMRQTVAVGVIKNVEKKDP+G
Sbjct:  332 VIIINHPGQIGNGYAPVLDCHTSHIAVKFAELMTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKNVEKKDPTG 436          
BLAST of CN189602 vs. ExPASy Swiss-Prot
Match: EF1A_SOLLC (Elongation factor 1-alpha OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 8.474e-53
Identity = 97/105 (92.38%), Postives = 105/105 (100.00%), Query Frame = -2
Query:  369 VIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKDPSG 683
            VIIMNHPGQIGNGYAPVLDCHTSHIAVKF+E++TKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETF++YPPLGRFAVRDMRQTVAVGV+KNV+KKDP+G
Sbjct:  332 VIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFAEYPPLGRFAVRDMRQTVAVGVVKNVDKKDPTG 436          
BLAST of CN189602 vs. ExPASy Swiss-Prot
Match: EF1A_MANES (Elongation factor 1-alpha OS=Manihot esculenta GN=EF1 PE=3 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 2.466e-52
Identity = 99/105 (94.29%), Postives = 103/105 (98.10%), Query Frame = -2
Query:  369 VIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKDPSG 683
            VIIMNHPGQIGNGYAPVLDCHTSHIAVKF+E++TKIDRRSGKELEKEPKFLKNGDAG VKMIPTKPMVVETFS YPPLGRFAVRDMRQTVAVGVIK+VEKKDPSG
Sbjct:  332 VIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSAYPPLGRFAVRDMRQTVAVGVIKSVEKKDPSG 436          
BLAST of CN189602 vs. ExPASy Swiss-Prot
Match: EF1A_ARATH (Elongation factor 1-alpha OS=Arabidopsis thaliana GN=A1 PE=1 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 3.220e-52
Identity = 97/105 (92.38%), Postives = 104/105 (99.05%), Query Frame = -2
Query:  369 VIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKDPSG 683
            VIIMNHPGQIGNGYAPVLDCHTSHIAVKFSE++TKIDRRSGKE+EKEPKFLKNGDAGMVKM PTKPMVVETFS+YPPLGRFAVRDMRQTVAVGVIK+V+KKDP+G
Sbjct:  332 VIIMNHPGQIGNGYAPVLDCHTSHIAVKFSEILTKIDRRSGKEIEKEPKFLKNGDAGMVKMTPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKDPTG 436          
BLAST of CN189602 vs. ExPASy Swiss-Prot
Match: EF1A2_DAUCA (Elongation factor 1-alpha OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 2.726e-51
Identity = 97/105 (92.38%), Postives = 101/105 (96.19%), Query Frame = -2
Query:  369 VIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKDPSG 683
            VIIMNHPGQIGNGYAPVLDCHTSHIAVKF+E+ TKIDRRSGKELEKEPKFLKNGDAG VKMIPTKPMVVETF  YPPLGRFAVRDMRQTVAVGVIK+VEKKDP+G
Sbjct:  332 VIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEIQTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFMSYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG 436          
The following BLAST results are available for this feature:
BLAST of CN189602 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 164
Match NameE-valueIdentityDescription
EF1A_ORYSJ3.440e-5497.14Elongation factor 1-alpha OS=Oryza sativa subsp. j... [more]
EF1A_MAIZE2.913e-5395.24Elongation factor 1-alpha OS=Zea mays GN=EF1A PE=3... [more]
EF1A_TOBAC4.968e-5393.33Elongation factor 1-alpha OS=Nicotiana tabacum PE=... [more]
EF1A_VICFA6.488e-5393.33Elongation factor 1-alpha OS=Vicia faba PE=2 SV=1[more]
EF1A_PEA6.488e-5393.33Elongation factor 1-alpha OS=Pisum sativum PE=2 SV... [more]
EF1A_SOYBN8.474e-5394.29Elongation factor 1-alpha OS=Glycine max GN=TEFS1 ... [more]
EF1A_SOLLC8.474e-5392.38Elongation factor 1-alpha OS=Solanum lycopersicum ... [more]
EF1A_MANES2.466e-5294.29Elongation factor 1-alpha OS=Manihot esculenta GN=... [more]
EF1A_ARATH3.220e-5292.38Elongation factor 1-alpha OS=Arabidopsis thaliana ... [more]
EF1A2_DAUCA2.726e-5192.38Elongation factor 1-alpha OS=Daucus carota PE=2 SV... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0002C01_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0002C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189602 ID=CN189602; Name=CN189602; organism=Citrus sinensis; type=EST; length=684bp
GACGGAAAAATGAAAAGTAGATATCAATTCCGCAGAAACAACACAATGAC
AAAACTTCTGAGCCGATTCAGATGAAACCGAACCACCTCAAGTATCAATA
CAAACAAAGACCATAACTATTAATAATATTGAGACTCCAGGTTAGAGCTG
CGCCACCGCCTGTCAAGCACCCAATTCTGGGAATCGGTACCCGACACCAA
AGGCAACAAACTAAAACCTACAAAGGAAAGCAAGCATCGAACTATAACAG
TACCAAAAATAACCAAGTTTGTATAACTACAATTATTAAAATAGACTCCA
TCTGCGGATAAAGCAACATTAACCAACCCGATTCACTTCTTCTTGGCTGC
AGACTTGGTGACCTTGGCACCTGATGGATCCTTCTTTTCAACATTCTTAA
TCACACCAACAGCAACAGTCTGACGCATGTCCCTAACGGCAAAACGACCA
AGAGGTGGGTAGTCAGAGAAGGTTTCAACAACCATGGGCTTGGTGGGAAT
CATCTTAACCATTCCAGCATCTCCATTCTTCAAGAACTTGGGCTCCTTCT
CAAGCTCCTTGCCTGATCGCCTATCAATCTTCGTCACGAGCTCAGAAAAC
TTGACGGCAATGTGGGAGGTGTGGCAGTCAAGCACTGGGGCATATCCATT
TCCAATCTGGCCAGGGTGGTTCATGATGATGACC
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