CN189601

Overview
NameCN189601
Unique NameCN189601
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length839
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13747 contig Csv1_Contig13747:371..1209. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CN189601 vs. ExPASy Swiss-Prot
Match: DRPE_CRAPL (Desiccation-related protein PCC13-62 OS=Craterostigma plantagineum PE=2 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 4.748e-47
Identity = 97/174 (55.75%), Postives = 116/174 (66.67%), Query Frame = -3 
Query:  316 EIGHLRAIVTTVGGFARPQIDLSRQNFANIFDQAVGYKLTPPFDPYSNTVNYLLASYVIPYVGLVGYVGTIPNLVNCTSRSLVAGLLGVESGQDAVIRTLLYERADQIVVPYKMTVAEFTDRISALRNRLGKRGNKDEGLRVPRRLGAENRTDXXXXXXXXXXXXXSRTPPEIL 837
            E GH+RAI ++V GF RP +DLS ++FA + D A G  L PPFDPY+N +NYLLA YV+PYVGL GYVG  P L +  SR LVAGLL VE+GQDA+IR LLYERA   V PY +TVAEFT++IS LRN+LG +G KD GL V   LGAE +                RTP   L
Sbjct:  103 EFGHVRAIQSSVEGFPRPLLDLSAKSFATVMDSAFGKTLKPPFDPYANDINYLLACYVVPYVGLTGYVGANPKLESPVSRKLVAGLLAVEAGQDAIIRALLYERATDKVEPYGITVAEFTNKISELRNKLGDKGVKDLGLIVEPELGAEGKISGNVLAGDKNSLAFPRTPERCL 276

HSP 2 Score: 23.0978 bits (48), Expect = 4.748e-47
Identity = 10/25 (40.00%), Postives = 13/25 (52.00%), Query Frame = -1 
Query:  240 GLCTELAVKISQEDFFPMVATGQLP 314
            G CT  A++ S   F P   TG+ P
Sbjct:  277 GSCTAAAMRPSPAAFIPKAPTGKSP 301
The following BLAST results are available for this feature:
BLAST of CN189601 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
DRPE_CRAPL4.748e-4755.75Desiccation-related protein PCC13-62 OS=Craterosti... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS06_0002C01_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0002C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189601 ID=CN189601; Name=CN189601; organism=Citrus sinensis; type=EST; length=839bp
CCCCTTGCTACACATATACTAGCTTATATTATAATTAATAAGCTCAAATT
ATTCGTGGTTCTTATACAACTTTGCCAATCGTAAACTAGGTCATATGTTT
GGGCTTCCATTTATTCTAATTAATCCCTGTGAATCAATCACAGACTGTGA
TTCACAGTAGACAGCCGTTAAACTTGTACGTAAACGTAACTGAAAGTTCA
TACTAATGAGCAATGATTAAAGTGCAGCAAGAAACCTCTTGGCAACTGCC
CCGTTGCCACCATTGGGAAAAAATCCTCCTGGCTTATTTTCACTGCCAGT
TCCGTACACAATCCTTAAAATCTCCGGCGGAGTTCGAGAGTAGGATAGGG
AATTAGCATTGGCTGATAGAATGTTACTATCTGTCCTGTTCTCAGCGCCA
AGTCTCCGTGGCACCCTTAGGCCCTCATCTTTGTTTCCGCGCTTGCCAAG
CCGGTTCCTAAGGGCGGAGATACGGTCAGTGAATTCAGCTACTGTCATCT
TATAAGGAACCACAATCTGGTCAGCCCTCTCGTATAGTAACGTCCGTATT
ACTGCATCTTGTCCAGACTCCACTCCTAAGAGCCCTGCAACTAAACTACG
AGAAGTGCAGTTGACAAGGTTGGGAATGGTGCCAACATAACCGACGAGTC
CCACATAAGGGATGACATAGCTTGCTAAGAGATAATTGACAGTGTTGGAA
TAAGGGTCGAATGGAGGAGTGAGTTTGTAACCAACTGCTTGGTCAAATAT
ATTGGCGAAATTTTGACGGCTGAGATCTATCTGAGGCCTTGCAAATCCAC
CAACTGTTGTTACGATAGCCCTGAGATGACCAATCTCCT
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