CN189598

Overview
NameCN189598
Unique NameCN189598
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length524
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1966 contig Csv1_Contig1966:278..801. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN189598 vs. ExPASy Swiss-Prot
Match: IDHC_TOBAC (Isocitrate dehydrogenase [NADP] OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 332.028 bits (850), Expect = 1.013e-90
Identity = 158/173 (91.33%), Postives = 165/173 (95.38%), Query Frame = 2 
Query:    5 LDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQKKWPLYL 523
            LDIKYFDLGLP+RDATDDKVTVESAEAT KYNVAIKCATITPDEARVKEF LK MW+SPNGTIRNILNGTVFREPI+CKN+PRL+PGWTKPICIGRHAFGDQYRATDTVIQG GKLKLVFVPEG DEKTE EVYNFTG GGVALSMYNTDES+R+FAEASMN AYQKKWPLYL
Sbjct:   39 LDIKYFDLGLPHRDATDDKVTVESAEATQKYNVAIKCATITPDEARVKEFNLKSMWRSPNGTIRNILNGTVFREPIMCKNIPRLVPGWTKPICIGRHAFGDQYRATDTVIQGAGKLKLVFVPEGTDEKTEFEVYNFTGAGGVALSMYNTDESVRSFAEASMNMAYQKKWPLYL 211
[Close]
BLAST of CN189598 vs. ExPASy Swiss-Prot
Match: IDHC_SOLTU (Isocitrate dehydrogenase [NADP] OS=Solanum tuberosum GN=ICDH-1 PE=2 SV=1)

HSP 1 Score: 327.02 bits (837), Expect = 3.257e-89
Identity = 155/173 (89.60%), Postives = 164/173 (94.80%), Query Frame = 2 
Query:    5 LDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQKKWPLYL 523
            LDIKYF LGLP+RDATDDKVTVESAEAT KYNVAIKCATITPDEARVKEF LK MW+SPNGTIRNILNGTVFREPI+CKN+PRL+PGWTKPICIGRHAFGDQYRATDTVI+G GKLKLVFVPEG DEKTE EVYNFTG GGVALSMYNTDES+R+FAEASMN A+QKKWPLYL
Sbjct:   39 LDIKYFSLGLPHRDATDDKVTVESAEATQKYNVAIKCATITPDEARVKEFNLKSMWRSPNGTIRNILNGTVFREPIMCKNIPRLVPGWTKPICIGRHAFGDQYRATDTVIKGAGKLKLVFVPEGSDEKTEFEVYNFTGAGGVALSMYNTDESVRSFAEASMNMAFQKKWPLYL 211
[Close]
BLAST of CN189598 vs. ExPASy Swiss-Prot
Match: IDHP_MEDSA (Isocitrate dehydrogenase [NADP], chloroplastic (Fragment) OS=Medicago sativa PE=2 SV=1)

HSP 1 Score: 321.627 bits (823), Expect = 1.368e-87
Identity = 154/173 (89.02%), Postives = 164/173 (94.80%), Query Frame = 2 
Query:    5 LDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQKKWPLYL 523
            LDIKYFDLGLP RD T+DKVTVESAEATLKYNVAIKCATITPDEARVKEF LK MW+SPNGTIRNILNGTVFREPIICKN+PRLIPGWTKPICIGRHAFGDQYRATD+VI+GPGKLKLVFVPEG+ E T+LEVYNFTGEGGVAL+MYNTDESIR+FAEASM  A +KKWPLYL
Sbjct:   60 LDIKYFDLGLPYRDETNDKVTVESAEATLKYNVAIKCATITPDEARVKEFGLKSMWRSPNGTIRNILNGTVFREPIICKNIPRLIPGWTKPICIGRHAFGDQYRATDSVIKGPGKLKLVFVPEGQGETTDLEVYNFTGEGGVALAMYNTDESIRSFAEASMAVALEKKWPLYL 232
[Close]
BLAST of CN189598 vs. ExPASy Swiss-Prot
Match: IDHC_SOYBN (Isocitrate dehydrogenase [NADP] OS=Glycine max GN=IDH1 PE=2 SV=2)

HSP 1 Score: 317.005 bits (811), Expect = 3.371e-86
Identity = 150/173 (86.71%), Postives = 163/173 (94.22%), Query Frame = 2 
Query:    5 LDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQKKWPLYL 523
            LDIKY+DLGLP RD TDDKVT+ESAEATLKYNVAIKCATITPDEARVKEF LK MWKSPNGTIRNILNGTVFREPI+CKN+PRL+PGWTK ICIGRHAFGDQYRATDTVI+G GKLKLVFVPEG+ E+TE EV+NFTGEGGV+L+MYNTDESIR+FAEASM TA +KKWPLYL
Sbjct:   40 LDIKYYDLGLPYRDETDDKVTIESAEATLKYNVAIKCATITPDEARVKEFGLKSMWKSPNGTIRNILNGTVFREPILCKNIPRLVPGWTKAICIGRHAFGDQYRATDTVIKGAGKLKLVFVPEGQGEETEFEVFNFTGEGGVSLAMYNTDESIRSFAEASMATALEKKWPLYL 212
[Close]
BLAST of CN189598 vs. ExPASy Swiss-Prot
Match: IDHP_MOUSE (Isocitrate dehydrogenase [NADP], mitochondrial OS=Mus musculus GN=Idh2 PE=1 SV=3)

HSP 1 Score: 252.292 bits (643), Expect = 1.020e-66
Identity = 120/173 (69.36%), Postives = 138/173 (79.77%), Query Frame = 2 
Query:    5 LDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQKKWPLYL 523
            + +KYFDLGLPNRD T+D+VT++SA AT KY+VA+KCATITPDEARV+EF LK+MWKSPNGTIRNIL GTVFREPIICKN+PRL+PGWTKPI IGRHA GDQY+ATD V+   G  KLVF P+      E EVYNF   GGV + MYNTDESI  FA +    + QKKWPLYL
Sbjct:   77 VQLKYFDLGLPNRDQTNDQVTIDSALATQKYSVAVKCATITPDEARVEEFKLKKMWKSPNGTIRNILGGTVFREPIICKNIPRLVPGWTKPITIGRHAHGDQYKATDFVVDRAGTFKLVFTPKDGSSAKEWEVYNFPA-GGVGMGMYNTDESISGFAHSCFQYSIQKKWPLYL 248
[Close]
BLAST of CN189598 vs. ExPASy Swiss-Prot
Match: IDHP_RAT (Isocitrate dehydrogenase [NADP], mitochondrial OS=Rattus norvegicus GN=Idh2 PE=1 SV=2)

HSP 1 Score: 251.521 bits (641), Expect = 1.739e-66
Identity = 120/173 (69.36%), Postives = 138/173 (79.77%), Query Frame = 2 
Query:    5 LDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQKKWPLYL 523
            + +KYFDLGLPNRD T+D+VT++SA AT KY+VA+KCATITPDEARV+EF LK+MWKSPNGTIRNIL GTVFREPIICKN+PRL+PGWTKPI IGRHA GDQY+ATD V+   G  KLVF P+      E EVYNF   GGV + MYNTDESI  FA +    + QKKWPLYL
Sbjct:   77 VQLKYFDLGLPNRDQTNDQVTIDSALATQKYSVAVKCATITPDEARVEEFKLKKMWKSPNGTIRNILGGTVFREPIICKNIPRLVPGWTKPITIGRHAHGDQYKATDFVVDRAGMFKLVFTPKDGSGAKEWEVYNFPA-GGVGMGMYNTDESISGFAHSCFQYSIQKKWPLYL 248
[Close]
BLAST of CN189598 vs. ExPASy Swiss-Prot
Match: IDHP_MACFA (Isocitrate dehydrogenase [NADP], mitochondrial OS=Macaca fascicularis GN=IDH2 PE=2 SV=1)

HSP 1 Score: 251.521 bits (641), Expect = 1.739e-66
Identity = 120/173 (69.36%), Postives = 137/173 (79.19%), Query Frame = 2 
Query:    5 LDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQKKWPLYL 523
            + +KYFDLGLPNRD TDD+VT++SA AT KY+VA+KCATITPDEARV+EF LK+MWKSPNGTIRNIL GTVFREPIICKN+PRL+PGWTKPI IGRHA GDQY+ATD V    G  K+VF P+      E EVYNF   GGV + MYNTDESI  FA +    A QKKWPLY+
Sbjct:   77 IQLKYFDLGLPNRDQTDDQVTIDSALATQKYSVAVKCATITPDEARVEEFKLKKMWKSPNGTIRNILGGTVFREPIICKNIPRLVPGWTKPITIGRHAHGDQYKATDFVADRAGTFKMVFTPKDGSGVKEWEVYNFPA-GGVGMGMYNTDESISGFAHSCFQYAIQKKWPLYM 248
[Close]
BLAST of CN189598 vs. ExPASy Swiss-Prot
Match: IDHP_HUMAN (Isocitrate dehydrogenase [NADP], mitochondrial OS=Homo sapiens GN=IDH2 PE=1 SV=2)

HSP 1 Score: 251.521 bits (641), Expect = 1.739e-66
Identity = 120/173 (69.36%), Postives = 137/173 (79.19%), Query Frame = 2 
Query:    5 LDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQKKWPLYL 523
            + +KYFDLGLPNRD TDD+VT++SA AT KY+VA+KCATITPDEARV+EF LK+MWKSPNGTIRNIL GTVFREPIICKN+PRL+PGWTKPI IGRHA GDQY+ATD V    G  K+VF P+      E EVYNF   GGV + MYNTDESI  FA +    A QKKWPLY+
Sbjct:   77 IQLKYFDLGLPNRDQTDDQVTIDSALATQKYSVAVKCATITPDEARVEEFKLKKMWKSPNGTIRNILGGTVFREPIICKNIPRLVPGWTKPITIGRHAHGDQYKATDFVADRAGTFKMVFTPKDGSGVKEWEVYNFPA-GGVGMGMYNTDESISGFAHSCFQYAIQKKWPLYM 248
[Close]
BLAST of CN189598 vs. ExPASy Swiss-Prot
Match: IDHP_PIG (Isocitrate dehydrogenase [NADP], mitochondrial (Fragment) OS=Sus scrofa GN=IDH2 PE=1 SV=1)

HSP 1 Score: 250.751 bits (639), Expect = 2.967e-66
Identity = 118/173 (68.21%), Postives = 138/173 (79.77%), Query Frame = 2 
Query:    5 LDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQKKWPLYL 523
            + +KYFDLGLPNRD T+D+VT++SA AT KY+VA+KCATITPDEARV+EF LK+MWKSPNGTIRNIL GTVFREPIICKN+PRL+PGWTKPI IGRHA GDQY+ATD V+   G  K+VF P+      + EVYNF   GGV + MYNTDESI  FA +    A QKKWPLY+
Sbjct:   46 VQLKYFDLGLPNRDQTNDQVTIDSALATQKYSVAVKCATITPDEARVEEFKLKKMWKSPNGTIRNILGGTVFREPIICKNIPRLVPGWTKPITIGRHAHGDQYKATDFVVDRAGTFKIVFTPKDGSSAKQWEVYNFPA-GGVGMGMYNTDESISGFAHSCFQYAIQKKWPLYM 217
[Close]
BLAST of CN189598 vs. ExPASy Swiss-Prot
Match: IDHP_BOVIN (Isocitrate dehydrogenase [NADP], mitochondrial OS=Bos taurus GN=IDH2 PE=1 SV=2)

HSP 1 Score: 250.751 bits (639), Expect = 2.967e-66
Identity = 119/173 (68.79%), Postives = 138/173 (79.77%), Query Frame = 2 
Query:    5 LDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQKKWPLYL 523
            + +KYFDLGLPNRD T+D+VT++SA AT KY+VA+KCATITPDEARV+EF LK+MWKSPNGTIRNIL GTVFREPIICKN+PRL+PGWTKPI IGRHA GDQY+ATD V+   G  K+VF P+      E EVYNF   GGV + MYNTDESI  FA +    A QKKWPLY+
Sbjct:   77 VQLKYFDLGLPNRDQTNDQVTIDSALATQKYSVAVKCATITPDEARVEEFKLKKMWKSPNGTIRNILGGTVFREPIICKNIPRLVPGWTKPITIGRHAHGDQYKATDFVVDRAGTFKVVFTPKDGSGPKEWEVYNFPA-GGVGMGMYNTDESISGFAHSCFQYAIQKKWPLYM 248
The following BLAST results are available for this feature:
BLAST of CN189598 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
IDHC_TOBAC1.013e-9091.33Isocitrate dehydrogenase [NADP] OS=Nicotiana tabac... [more]
IDHC_SOLTU3.257e-8989.60Isocitrate dehydrogenase [NADP] OS=Solanum tuberos... [more]
IDHP_MEDSA1.368e-8789.02Isocitrate dehydrogenase [NADP], chloroplastic (Fr... [more]
IDHC_SOYBN3.371e-8686.71Isocitrate dehydrogenase [NADP] OS=Glycine max GN=... [more]
IDHP_MOUSE1.020e-6669.36Isocitrate dehydrogenase [NADP], mitochondrial OS=... [more]
IDHP_RAT1.739e-6669.36Isocitrate dehydrogenase [NADP], mitochondrial OS=... [more]
IDHP_MACFA1.739e-6669.36Isocitrate dehydrogenase [NADP], mitochondrial OS=... [more]
IDHP_HUMAN1.739e-6669.36Isocitrate dehydrogenase [NADP], mitochondrial OS=... [more]
IDHP_PIG2.967e-6668.21Isocitrate dehydrogenase [NADP], mitochondrial (Fr... [more]
IDHP_BOVIN2.967e-6668.79Isocitrate dehydrogenase [NADP], mitochondrial OS=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS06_0002B23_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0002B23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189598 ID=CN189598; Name=CN189598; organism=Citrus sinensis; type=EST; length=524bp
AGGGTTGGACATAAAGTACTTCGACCTTGGCCTTCCGAATCGTGATGCAA
CTGATGACAAAGTTACCGTTGAAAGTGCAGAAGCCACTCTCAAGTACAAT
GTAGCGATCAAGTGTGCTACTATTACTCCAGATGAAGCTCGTGTTAAGGA
ATTTGTCTTGAAACAGATGTGGAAGAGTCCAAATGGGACAATCAGGAATA
TTTTGAATGGCACTGTTTTCAGAGAACCAATCATTTGCAAAAATGTCCCT
CGGCTTATTCCAGGCTGGACAAAGCCCATATGCATTGGCAGGCATGCTTT
TGGTGATCAATATCGAGCAACTGATACAGTTATTCAAGGACCTGGCAAAC
TTAAATTGGTGTTTGTACCAGAGGGAAAAGATGAGAAGACAGAGTTAGAG
GTTTACAACTTTACGGGTGAGGGTGGAGTTGCATTGTCCATGTATAACAC
TGATGAGTCCATCCGAGCTTTTGCTGAGGCTTCTATGAACACTGCCTATC
AGAAGAAGTGGCCACTCTATCTTA
back to top