CN189597

Overview
NameCN189597
Unique NameCN189597
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length678
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9984 contig Csv1_Contig9984:23..689. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN189597 vs. ExPASy Swiss-Prot
Match: IDHC_TOBAC (Isocitrate dehydrogenase [NADP] OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 238.039 bits (606), Expect = 3.372e-62
Identity = 116/129 (89.92%), Postives = 124/129 (96.12%), Query Frame = -2
Query:  291 FLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACVGTVEFGKMTKDLALIIHGFKMTREHYLNTEEFIDAVANDLRARL 677
            FLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAW+RGLAHRA LDNN RLLDFTEKLEAAC+G VE GKMTKDLALIIHG K++R+HYLNTEEFIDAVA++L+ARL
Sbjct:  282 FLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWTRGLAHRATLDNNERLLDFTEKLEAACIGAVESGKMTKDLALIIHGSKLSRDHYLNTEEFIDAVADELKARL 410          
BLAST of CN189597 vs. ExPASy Swiss-Prot
Match: IDHC_SOYBN (Isocitrate dehydrogenase [NADP] OS=Glycine max GN=IDH1 PE=2 SV=2)

HSP 1 Score: 235.728 bits (600), Expect = 1.674e-61
Identity = 115/129 (89.15%), Postives = 124/129 (96.12%), Query Frame = -2
Query:  291 FLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACVGTVEFGKMTKDLALIIHGFKMTREHYLNTEEFIDAVANDLRARL 677
            FLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRH+RVHQKGGETSTNSIASIFAW+RGLAHRAKLD+NA+LLDFTEKLEAAC+G VE GKMTKDLALI+HG K++REHYLNTEEFIDAVA +L ARL
Sbjct:  283 FLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHFRVHQKGGETSTNSIASIFAWTRGLAHRAKLDDNAKLLDFTEKLEAACIGVVEAGKMTKDLALILHGSKLSREHYLNTEEFIDAVAAELSARL 411          
BLAST of CN189597 vs. ExPASy Swiss-Prot
Match: IDHC_SOLTU (Isocitrate dehydrogenase [NADP] OS=Solanum tuberosum GN=ICDH-1 PE=2 SV=1)

HSP 1 Score: 234.572 bits (597), Expect = 3.728e-61
Identity = 117/130 (90.00%), Postives = 124/130 (95.38%), Query Frame = -2
Query:  291 FLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACVGTVEFGKMTKDLAL-IIHGFKMTREHYLNTEEFIDAVANDLRARL 677
            FLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAW+RGLAHRA LDNN RLLDFTEKLEAAC+G VE GKMTKDLAL IIHG K++REHYLNTEEFIDAVA++L+ARL
Sbjct:  282 FLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWTRGLAHRATLDNNERLLDFTEKLEAACIGAVESGKMTKDLALIIIHGSKLSREHYLNTEEFIDAVADELKARL 411          
BLAST of CN189597 vs. ExPASy Swiss-Prot
Match: IDHP_MEDSA (Isocitrate dehydrogenase [NADP], chloroplastic (Fragment) OS=Medicago sativa PE=2 SV=1)

HSP 1 Score: 232.261 bits (591), Expect = 1.850e-60
Identity = 112/129 (86.82%), Postives = 123/129 (95.35%), Query Frame = -2
Query:  291 FLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACVGTVEFGKMTKDLALIIHGFKMTREHYLNTEEFIDAVANDLRARL 677
            FLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRH+RVHQKGGETSTNSIASIFAW+RGLAHRAKLD+NA LLDFTEKLEAAC+G VE GKMTKDLALI+HG K++REHYLNTEEFIDAVA +L+ ++
Sbjct:  303 FLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHFRVHQKGGETSTNSIASIFAWTRGLAHRAKLDDNATLLDFTEKLEAACIGVVESGKMTKDLALILHGSKLSREHYLNTEEFIDAVAAELKTKI 431          
BLAST of CN189597 vs. ExPASy Swiss-Prot
Match: IDHC_MICOH (Isocitrate dehydrogenase [NADP] cytoplasmic OS=Microtus ochrogaster GN=IDH1 PE=3 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 5.409e-44
Identity = 87/129 (67.44%), Postives = 103/129 (79.84%), Query Frame = -2
Query:  291 LAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACVGTVEFGKMTKDLALIIHGF-KMTREHYLNTEEFIDAVANDLRARL 674
            +AQG+GSLG+MTSVL+CPDGKT+EAEAAHGTVTRHYR+HQKG ETSTN IASIFAWSRGLAHRA+LDNN  L  F + LE  C+ T+E G MTKDLA  I G   + R  YLNT EF+D +  +L+A+L
Sbjct:  281 VAQGYGSLGMMTSVLICPDGKTVEAEAAHGTVTRHYRMHQKGQETSTNPIASIFAWSRGLAHRARLDNNTELSFFAKALEEVCIETIEAGFMTKDLAACIKGLPNVQRSDYLNTFEFMDKLGENLKAKL 409          
BLAST of CN189597 vs. ExPASy Swiss-Prot
Match: IDHC_MICME (Isocitrate dehydrogenase [NADP] cytoplasmic OS=Microtus mexicanus GN=IDH1 PE=2 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 5.409e-44
Identity = 87/129 (67.44%), Postives = 103/129 (79.84%), Query Frame = -2
Query:  291 LAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACVGTVEFGKMTKDLALIIHGF-KMTREHYLNTEEFIDAVANDLRARL 674
            +AQG+GSLG+MTSVL+CPDGKT+EAEAAHGTVTRHYR+HQKG ETSTN IASIFAWSRGLAHRA+LDNN  L  F + LE  C+ T+E G MTKDLA  I G   + R  YLNT EF+D +  +L+A+L
Sbjct:  281 VAQGYGSLGMMTSVLICPDGKTVEAEAAHGTVTRHYRMHQKGQETSTNPIASIFAWSRGLAHRARLDNNTELSFFAKALEEVCIETIEAGFMTKDLAACIKGLPNVQRSDYLNTFEFMDKLGENLKAKL 409          
BLAST of CN189597 vs. ExPASy Swiss-Prot
Match: IDHC_RAT (Isocitrate dehydrogenase [NADP] cytoplasmic OS=Rattus norvegicus GN=Idh1 PE=1 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 1.574e-43
Identity = 87/129 (67.44%), Postives = 102/129 (79.07%), Query Frame = -2
Query:  291 LAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACVGTVEFGKMTKDLALIIHGF-KMTREHYLNTEEFIDAVANDLRARL 674
            +AQG+GSLG+MTSVL+CPDGKT+EAEAAHGTVTRHYR++QKG ETSTN IASIFAWSRGLAHRAKLDNN  L  F   LE  C+ T+E G MTKDLA  I G   + R  YLNT EF+D +  +L+A+L
Sbjct:  281 VAQGYGSLGMMTSVLICPDGKTVEAEAAHGTVTRHYRMYQKGQETSTNPIASIFAWSRGLAHRAKLDNNTELSFFANALEEVCIETIEAGFMTKDLAACIKGLPNVQRSDYLNTFEFMDKLGENLKAKL 409          
BLAST of CN189597 vs. ExPASy Swiss-Prot
Match: IDHC_MOUSE (Isocitrate dehydrogenase [NADP] cytoplasmic OS=Mus musculus GN=Idh1 PE=1 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 1.574e-43
Identity = 87/129 (67.44%), Postives = 103/129 (79.84%), Query Frame = -2
Query:  291 LAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACVGTVEFGKMTKDLALIIHGF-KMTREHYLNTEEFIDAVANDLRARL 674
            +AQG+GSLG+MTSVL+CPDGKT+EAEAAHGTVTRHYR++QKG ETSTN IASIFAWSRGLAHRAKLDNN  L  F + LE  C+ T+E G MTKDLA  I G   + R  YLNT EF+D +  +L+A+L
Sbjct:  281 VAQGYGSLGMMTSVLICPDGKTVEAEAAHGTVTRHYRMYQKGQETSTNPIASIFAWSRGLAHRAKLDNNTELSFFAKALEDVCIETIEAGFMTKDLAACIKGLPNVQRSDYLNTFEFMDKLGENLKAKL 409          
BLAST of CN189597 vs. ExPASy Swiss-Prot
Match: IDHP_RAT (Isocitrate dehydrogenase [NADP], mitochondrial OS=Rattus norvegicus GN=Idh2 PE=1 SV=2)

HSP 1 Score: 175.637 bits (444), Expect = 2.055e-43
Identity = 91/133 (68.42%), Postives = 101/133 (75.94%), Query Frame = -2
Query:  282 LAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACVGTVEFGKMTKDLALIIHGFKMTR--EHYLNTEEFIDAVANDLRARLFGK 674
            LAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYR HQKG  TSTN IASIFAW+RGL HR KLD N  L+ F + LE  CV TVE G MTKDLA  IHG    +  EH+LNT +F+D + ++L  R  GK
Sbjct:  320 LAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYREHQKGRPTSTNPIASIFAWTRGLEHRGKLDGNQDLIRFAQTLEKVCVQTVESGAMTKDLAGCIHGLSNVKLNEHFLNTTDFLDTIKSNL-DRALGK 451          
BLAST of CN189597 vs. ExPASy Swiss-Prot
Match: IDHP_PIG (Isocitrate dehydrogenase [NADP], mitochondrial (Fragment) OS=Sus scrofa GN=IDH2 PE=1 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 2.055e-43
Identity = 88/126 (69.84%), Postives = 98/126 (77.78%), Query Frame = -2
Query:  303 LAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACVGTVEFGKMTKDLALIIHGFKMTR--EHYLNTEEFIDAVANDL 674
            LAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYR HQKG  TSTN IASIFAW+RGL HR KLD N  L+ F + LE  CV TVE G MTKDLA  IHG    +  EH+LNT +F+D + ++L
Sbjct:  289 LAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYREHQKGRPTSTNPIASIFAWTRGLEHRGKLDGNQDLIRFAQTLEKVCVETVESGAMTKDLAGCIHGLSNVKLNEHFLNTSDFLDTIKSNL 414          
The following BLAST results are available for this feature:
BLAST of CN189597 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
IDHC_TOBAC3.372e-6289.92Isocitrate dehydrogenase [NADP] OS=Nicotiana tabac... [more]
IDHC_SOYBN1.674e-6189.15Isocitrate dehydrogenase [NADP] OS=Glycine max GN=... [more]
IDHC_SOLTU3.728e-6190.00Isocitrate dehydrogenase [NADP] OS=Solanum tuberos... [more]
IDHP_MEDSA1.850e-6086.82Isocitrate dehydrogenase [NADP], chloroplastic (Fr... [more]
IDHC_MICOH5.409e-4467.44Isocitrate dehydrogenase [NADP] cytoplasmic OS=Mic... [more]
IDHC_MICME5.409e-4467.44Isocitrate dehydrogenase [NADP] cytoplasmic OS=Mic... [more]
IDHC_RAT1.574e-4367.44Isocitrate dehydrogenase [NADP] cytoplasmic OS=Rat... [more]
IDHC_MOUSE1.574e-4367.44Isocitrate dehydrogenase [NADP] cytoplasmic OS=Mus... [more]
IDHP_RAT2.055e-4368.42Isocitrate dehydrogenase [NADP], mitochondrial OS=... [more]
IDHP_PIG2.055e-4369.84Isocitrate dehydrogenase [NADP], mitochondrial (Fr... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0002B23_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0002B23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189597 ID=CN189597; Name=CN189597; organism=Citrus sinensis; type=EST; length=678bp
TTTTTTTTTTTTTTTTTAAAACCAGGGAACGTAAATTTNGGCAGCAATAG
TTTTTGTTTATAACAAGCCATGTTCAAAACATTTGCTTGCATGAAAATGA
AAGTTTGTCGATCAACAGGAAAGCAGTCTATTGTAGGAATTAAAAAAAAA
CCAAATCCCAATCCCCAATTTTCCCCTCTTCAATTATTTCTTCTCAGCAT
AATATGAAAAAAATAACCAAAGGAAGCTTCCCCAAGTCTTTACCTTTGAA
TGGGTAGCATCTGCAACAAAAAAAATCATGCTTTGCCAAAAAGTCTTGCT
CTTAAATCGTTGGCCACAGCATCAATGAACTCTTCAGTATTCAAATAGTG
TTCCCTAGTCATCTTAAATCCATGGATAATAAGTGCAAGATCCTTGGTCA
TCTTCCCAAATTCAACAGTGCCAACACATGCAGCTTCTAGTTTCTCAGTA
AAATCCAATAGCCTAGCATTGTTGTCCAACTTCGCCCTATGTGCAAGCCC
TCGTGACCAAGCAAAGATGGAGGCTATGCTGTTTGTGCTAGTTTCACCAC
CTTTCTGATGAACTCTGTAGTGTCGGGTGACTGTTCCATGGGCGGCTTCG
GCTTCAATTGTCTTCCCATCAGGGCATACCAGTACAGATGTCATCAATCC
AAGAGATCCAAACCCTTGAGCTAGGAAA
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