CN189596

Overview
NameCN189596
Unique NameCN189596
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length474
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2265 contig Csv1_Contig2265:86..559. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN189596 vs. ExPASy Swiss-Prot
Match: GSL_ARATH (Probable 2-oxoacid dependent dioxygenase OS=Arabidopsis thaliana GN=GSL-OH PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 1.277e-24
Identity = 57/144 (39.58%), Postives = 86/144 (59.72%), Query Frame = 2
Query:   44 ESYDRAKEVKRFDESXXXXXXXXXXXXTAIPRFFIHPPATLADLRPKSKTRPVSDVVPTIDLSGV-DSDDLRPTIVEKIACASRELGFFQVVNHGIGVEVLERMVRAIKGFHEQPPEIKAPVYRRENTKGVSYISNIDLFHSKA 472
            E+YDRA E+K FDE             T +PR F +P   +A+ +P S       ++PTIDL GV +S  +R ++V K+  A  + GFFQ +NHG+ ++V+E+M+  I+ FH+Q PE++   Y R+ TK + Y SN DL+ S A
Sbjct:    3 ENYDRASELKAFDEMKIGVKGLVDAGVTKVPRIFHNPHVNVANPKPTSTVV----MIPTIDLGGVFESTVVRESVVAKVKDAMEKFGFFQAINHGVPLDVMEKMINGIRRFHDQDPEVRKMFYTRDKTKKLKYHSNADLYESPA 142          
BLAST of CN189596 vs. ExPASy Swiss-Prot
Match: ACCH1_ARATH (1-aminocyclopropane-1-carboxylate oxidase homolog 1 OS=Arabidopsis thaliana GN=At1g06620 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 9.153e-23
Identity = 60/150 (40.00%), Postives = 86/150 (57.33%), Query Frame = 2
Query:   26 ATIMSLESYDRAKEVKRFDESXXXXXXXXXXXXTAIPRFFIHPPATLADLRPKSKTRPVSDVVPTIDLSGVDSDDL-RPTIVEKIACASRELGFFQVVNHGIGVEVLERMVRAIKGFHEQPPEIKAPVYRRENTKGVSYISNIDLFHSKA 472
            +++  + + DR+  +K FDE+            T IP  F  PPATL   +P S +      +PTIDL G  +D + R ++VEKI  A+ + GFFQV+NHGI ++VLE+M+  I+ FHEQ  E+K   Y R+    + Y SN DLF S A
Sbjct:    3 SSLPQVAALDRSTLLKAFDETKTGVKGLIDAGITEIPSIFRAPPATLTSPKPPSSS---DFSIPTIDLKGGGTDSITRRSLVEKIGDAAEKWGFFQVINHGIPMDVLEKMIDGIREFHEQDTEVKKGFYSRDPASKMVYSSNFDLFSSPA 149          
BLAST of CN189596 vs. ExPASy Swiss-Prot
Match: ACCH3_ARATH (1-aminocyclopropane-1-carboxylate oxidase homolog 4 OS=Arabidopsis thaliana GN=At1g06650 PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 2.663e-22
Identity = 54/143 (37.76%), Postives = 80/143 (55.94%), Query Frame = 2
Query:   50 YDRAKEVKRFDESXXXXXXXXXXXXTAIPRFFIHPPATLADLRPKSKTRPVSDVVPTIDLSGVDSDDL--RPTIVEKIACASRELGFFQVVNHGIGVEVLERMVRAIKGFHEQPPEIKAPVYRRENTKGVSYISNIDLFHSKA 472
            +DRA E+K FDE+            + +PR F HP   L+  +P          +PTIDL G D  D   R   +E+I  A+ + GFFQV+NHG+ +E+LE+M + ++ FHEQ  E++   Y R+ ++   Y+SN DLF S A
Sbjct:   10 FDRASELKAFDETKTGVKGLVDSGVSQVPRIFHHPTVKLSTPKPLPSDLLHLKTIPTIDLGGRDFQDAIKRNNAIEEIKEAAAKWGFFQVINHGVSLELLEKMKKGVRDFHEQSQEVRKEFYSRDFSRRFLYLSNFDLFSSPA 152          
BLAST of CN189596 vs. ExPASy Swiss-Prot
Match: ACCH2_ARATH (1-aminocyclopropane-1-carboxylate oxidase homolog 2 OS=Arabidopsis thaliana GN=At1g06640 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 3.478e-22
Identity = 55/144 (38.19%), Postives = 80/144 (55.56%), Query Frame = 2
Query:   47 SYDRAKEVKRFDESXXXXXXXXXXXXTAIPRFFIHPPATLADLRPKSKTRPVSDVVPTIDLSGVDSDDL--RPTIVEKIACASRELGFFQVVNHGIGVEVLERMVRAIKGFHEQPPEIKAPVYRRENTKGVSYISNIDLFHSKA 472
            S+DRA E+K FDE+            + IPR F H    LA+ +P          +PTIDL G D  D       +E I  A+ + GFFQV+NHG+ +E+LE+M   ++ FHEQPPE++  +Y R+  +   Y+SN DL+ + A
Sbjct:    9 SFDRASELKAFDETKTGVKGLVDSGISKIPRIFHHSSVELANPKPLPSDLLHLKTIPTIDLGGRDFQDAIKHKNAIEGIKEAAAKWGFFQVINHGVSLELLEKMKDGVRDFHEQPPEVRKDLYSRDFGRKFIYLSNFDLYTAAA 152          
BLAST of CN189596 vs. ExPASy Swiss-Prot
Match: ACCH3_SOLLC (1-aminocyclopropane-1-carboxylate oxidase homolog OS=Solanum lycopersicum GN=ACO3 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 2.254e-21
Identity = 55/142 (38.73%), Postives = 79/142 (55.63%), Query Frame = 2
Query:   44 ESYDRAKEVKRFDESXXXXXXXXXXXXTAIPRFFIHPPATLADLRPKSKTRPVSDVVPTIDLSGVDSDDLR-PTIVEKIACASRELGFFQVVNHGIGVEVLERMVRAIKGFHEQPPEIKAPVYRRENTKGVSYISNIDLFHS 466
            ESYD+  E+K FD++            T +P+ F+ PP      + ++K      V P IDL G+D D ++   IV+K+  AS + GFFQVVNHGI   VL+R ++  + F EQ  E+K   Y R+  K V Y SN+DL+ S
Sbjct:    8 ESYDKMSELKAFDDTKAGVKGLVDSGITKVPQIFVLPP------KDRAKKCETHFVFPVIDLQGIDEDPIKHKEIVDKVRDASEKWGFFQVVNHGIPTSVLDRTLQGTRQFFEQDNEVKKQYYTRDTAKKVVYTSNLDLYKS 143          
BLAST of CN189596 vs. ExPASy Swiss-Prot
Match: DV4H_CATRO (Deacetoxyvindoline 4-hydroxylase OS=Catharanthus roseus GN=D4H PE=1 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 1.512e-17
Identity = 55/140 (39.29%), Postives = 79/140 (56.43%), Query Frame = 2
Query:   38 SLESYDRAKEVKRFDESXXXXXXXXXXXXTAIPRFFIHPPATLADLRPKSKTRPVSDV-VPTIDLSGVDSD-DLRPTIVEKIACASRELGFFQVVNHGIGVEVLERMVRAIKGFHEQPPEIKAPVYRREN-TKGVSYISN 448
            +L   +  +E+K FDE+            T IPR FI  P  L  +   S  R  SD+ +P I+L+G+ S+ ++R  IVEKI  AS + GFFQ+VNHGI  +V+++MV  ++ FHEQ  +IK   Y R+   K   Y SN
Sbjct:   35 TLSEEESLRELKAFDETKAGVKGIVDTGITKIPRIFIDQPKNLDRI---SVCRGKSDIKIPVINLNGLSSNSEIRREIVEKIGEASEKYGFFQIVNHGIPQDVMDKMVDGVRKFHEQDDQIKRQYYSRDRFNKNFLYSSN 171          
The following BLAST results are available for this feature:
BLAST of CN189596 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
GSL_ARATH1.277e-2439.58Probable 2-oxoacid dependent dioxygenase OS=Arabid... [more]
ACCH1_ARATH9.153e-2340.001-aminocyclopropane-1-carboxylate oxidase homolog ... [more]
ACCH3_ARATH2.663e-2237.761-aminocyclopropane-1-carboxylate oxidase homolog ... [more]
ACCH2_ARATH3.478e-2238.191-aminocyclopropane-1-carboxylate oxidase homolog ... [more]
ACCH3_SOLLC2.254e-2138.731-aminocyclopropane-1-carboxylate oxidase homolog ... [more]
DV4H_CATRO1.512e-1739.29Deacetoxyvindoline 4-hydroxylase OS=Catharanthus r... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS06_0002B22_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0002B22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189596 ID=CN189596; Name=CN189596; organism=Citrus sinensis; type=EST; length=474bp
AGTCAAATATCAATTAACAAGAAGAGCTACAATCATGAGCCTAGAATCAT
ACGACAGGGCCAAAGAAGTGAAACGATTCGACGAGTCCAAAGTCGGGGTC
AAAGGTTTAGTTGACTTGGGCGTCACCGCCATCCCCCGCTTTTTCATCCA
CCCACCCGCCACTCTTGCCGATCTCAGACCCAAGTCAAAGACCCGGCCCG
TCTCTGATGTAGTCCCCACCATCGATTTATCGGGCGTTGACTCGGACGAT
CTGCGGCCGACGATTGTGGAAAAGATAGCATGTGCCTCGCGGGAGCTGGG
GTTCTTTCAGGTTGTGAATCACGGCATCGGAGTTGAGGTCTTGGAGCGTA
TGGTTCGGGCCATTAAAGGGTTTCATGAACAGCCGCCGGAGATCAAGGCG
CCGGTGTATCGTAGGGAGAACACCAAAGGCGTGTCTTACATTTCCAACAT
CGATTTGTTTCACTCTAAAGCTGC
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