CN189497

Overview
NameCN189497
Unique NameCN189497
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length751
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7556 contig Csv1_Contig7556:754..1505. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN189497 vs. ExPASy Swiss-Prot
Match: PDIA6_MEDSA (Probable protein disulfide-isomerase A6 OS=Medicago sativa PE=2 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 6.274e-47
Identity = 93/127 (73.23%), Postives = 110/127 (86.61%), Query Frame = -3
Query:  369 EYGGGRDLEDFVSFINEKCGTSRDGKGQLTSTAGIVASLDALVKEFVAASGDEKKAVFSKIERGVEVLEGSTARHGKIYLKVAKNYMDKGSDYAKKEIDRLQRMLDKSISAAKADEFVLKKNILSTF 749
            +YGGGRDL+DFV+FINEK GTSRD KGQLTS AGIV  LD LVKEFVAA+ +EKKAVF++IE  V+ LEGS +R+GKIYLKV+K Y++KGSDYAK EI RL+R+L+KSIS AKADE  LKKNILST+
Sbjct:  237 DYGGGRDLDDFVAFINEKSGTSRDAKGQLTSEAGIVEDLDELVKEFVAANDEEKKAVFARIEEEVKKLEGSASRYGKIYLKVSKKYLEKGSDYAKNEIQRLERLLEKSISPAKADELTLKKNILSTY 363          
BLAST of CN189497 vs. ExPASy Swiss-Prot
Match: PDIA6_ARATH (Probable protein disulfide-isomerase A6 OS=Arabidopsis thaliana GN=At2g47470 PE=1 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.709e-44
Identity = 91/127 (71.65%), Postives = 105/127 (82.68%), Query Frame = -3
Query:  369 EYGGGRDLEDFVSFINEKCGTSRDGKGQLTSTAGIVASLDALVKEFVAASGDEKKAVFSKIERGVEVLEGSTARHGKIYLKVAKNYMDKGSDYAKKEIDRLQRMLDKSISAAKADEFVLKKNILSTF 749
            +Y GGRDL+DFVSFINEK GTSRD KGQLTS AGIV SLDALVKE VAAS DEKKAV S+IE     L+GST R+GK+YLK+AK+Y++KGSDYA KE +RL R+L KSIS  KADE  LK+NIL+TF
Sbjct:  231 DYDGGRDLDDFVSFINEKSGTSRDSKGQLTSKAGIVESLDALVKELVAASEDEKKAVLSRIEEEASTLKGSTTRYGKLYLKLAKSYIEKGSDYASKETERLGRVLGKSISPVKADELTLKRNILTTF 357          
BLAST of CN189497 vs. ExPASy Swiss-Prot
Match: PDI1_DICDI (Protein disulfide-isomerase 1 OS=Dictyostelium discoideum GN=pdi1 PE=1 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 6.119e-18
Identity = 47/127 (37.01%), Postives = 73/127 (57.48%), Query Frame = -3
Query:  369 EYGGGRDLEDFVSFINEKCGTSRDGKGQLTSTAGIVASLDALVKEFVAASGDEKKAVFSKIERGVEVLEGSTARHGKIYLKVAKNYMDKGSDYAKKEIDRLQRMLDKSISAAKADEFVLKKNILSTF 749
            +Y  GRDL+ F+++IN++ G +R   G+L   AG V  LD +  EF+AA+ + +K +  K +  V+ L       G  Y+KV K   +K  D+   EI R+ +++  S+S  KADEF  K NIL +F
Sbjct:  234 KYEQGRDLDTFINYINKQAGVNRVKGGKLAVGAGRVEQLDTIATEFIAAAAEVRKELVKKAQTVVDSLPEELRTEGSYYVKVMKTIAEKSIDFVTTEIARITKLVSGSMSGKKADEFAKKLNILESF 360          
BLAST of CN189497 vs. ExPASy Swiss-Prot
Match: PDI2_SCHPO (Protein disulfide-isomerase C17H9.14c OS=Schizosaccharomyces pombe GN=SPAC17H9.14c PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.011e-12
Identity = 48/127 (37.80%), Postives = 71/127 (55.91%), Query Frame = -3
Query:  369 YGGGRDLEDFVSFINEKCGTSRDGKGQLTSTAGIVASLDALVKEFVAASGDEKKAVFSKIERGVEVLEGSTARHGKIYLKVAKNYMDKGSDYAKKEIDRLQRML-DKSISAAKADEFVLKKNILSTF 746
            Y G R LE  + +IN+K GT R   G L STAG + + D    EF+  S   K+ V  K+++    LE S +R  K Y KV +  ++   ++  KE  RL ++L  KSI+ A AD+F  + NIL++F
Sbjct:  232 YEGDRSLESLIEYINKKSGTQRSPDGTLLSTAGRIPTFDEFAAEFLDMSNAAKEVVLEKVKQ--LALEDS-SRWTKYYKKVFEKILN-DENWVHKEAKRLSKLLRQKSIALASADDFKTRLNILNSF 354          
BLAST of CN189497 vs. ExPASy Swiss-Prot
Match: ERP38_NEUCR (Protein disulfide-isomerase erp38 OS=Neurospora crassa GN=erp38 PE=2 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 2.941e-12
Identity = 46/129 (35.66%), Postives = 69/129 (53.49%), Query Frame = -3
Query:  369 EYGGGRDLEDFVSFINEKCGTSRDGKGQLTSTAGIVASLDALVKEFVAASGDEKKAVFSKIERGVEVLEGST-ARHGKIYLKVAKNYMDKGSDYAKKEIDRLQRMLDK-SISAAKADEFVLKKNILSTF 749
            +Y GGR   D V F+NEK GT R   G L + AG +A+LD +V ++    G     V  + +  V+ L+ S   ++   YL+V  + + K   YA KE  RL+ +L K  ++ AK DE  +K N+L  F
Sbjct:  232 DYNGGRSEADLVKFLNEKAGTHRTPGGGLDTVAGTIAALDEIVAKY--TGGASLAEVAEEAKEAVKSLKNSAELKYADYYLRVL-DKLSKSEGYATKEFARLEGILKKGGLAPAKVDELTVKVNVLRKF 357          
The following BLAST results are available for this feature:
BLAST of CN189497 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
PDIA6_MEDSA6.274e-4773.23Probable protein disulfide-isomerase A6 OS=Medicag... [more]
PDIA6_ARATH1.709e-4471.65Probable protein disulfide-isomerase A6 OS=Arabido... [more]
PDI1_DICDI6.119e-1837.01Protein disulfide-isomerase 1 OS=Dictyostelium dis... [more]
PDI2_SCHPO1.011e-1237.80Protein disulfide-isomerase C17H9.14c OS=Schizosac... [more]
ERP38_NEUCR2.941e-1235.66Protein disulfide-isomerase erp38 OS=Neurospora cr... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS06_0001P09_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001P09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189497 ID=CN189497; Name=CN189497; organism=Citrus sinensis; type=EST; length=751bp
TTAGTGCCTCTAATATGAGTCACTTCTAATTATAGTTTTTTTCCATGTTC
CTAAATGAAACAAAATAAGTAACTCGGCGGCGACATTAACGTTTAGAAAC
CAGAAAGCATCCCAAAATTGTAACTGTGAACGAACGTTTTATCTAAATCA
TTACACTACCTAATTGTACTTCTCTTAACACAAGTTTCATCATATGTGGT
CATTTATGTCTGAGACCTCAAGATCTTTCCCCGTTAAAAGAAGCTCTGCT
CAAATAAATTCACAGCAACATCAGATGGCTGTGGTCCATCAATCTCCATA
AAGTCGACTTATAGGTAACCCCAGCCCAATTTGAGATGAATAAAAAAACA
TAATCCCACATATTAAGTGAATGTGGATAAAATATTTTTCTTGAGGACGA
ATTCGTCCGCTTTTGCCGCGCTGATTGACTTGTCAAGCATACGCTGGAGG
CGATCAATTTCCTTCTTCGCATAATCACTCCCTTTGTCCATATAGTTCTT
TGCAACTTTCAAGTAAATCTTCCCATGCCTGGCAGTGGAACCCTCAAGCA
CCTCAACTCCCCGTTCAATCTTTGAGAAGACTGCCTTCTTCTCATCACCG
CTAGCAGCAACAAATTCCTTCACCAAGGCATCTAAGCTCGCAACTATACC
CGCCGTTGAAGTAAGTTGTCCTTTTCCATCACGACTGGTGCCACATTTTT
CATTGATGAAAGAAACAAAGTCTTCCAAATCTCTGCCACCCCCATATTCC
T
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