CN189496
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN189496 vs. ExPASy Swiss-Prot
Match: RN126_XENTR (RING finger protein 126 OS=Xenopus tropicalis GN=rnf126 PE=2 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 7.703e-16 Identity = 30/64 (46.88%), Postives = 46/64 (71.88%), Query Frame = -3 Query: 466 IESMPSIEILSGHVSSECHCAVCKEAFELGNEAREMPCKHIYHEDCILPWLKMRNSCPVCRQEL 657 I+++P+I+I HV S C VCKE + +G R++PC H++H DCI+PWL+ ++CPVCR+ L Sbjct: 208 IQALPTIQITEEHVGSGLECPVCKEDYTVGESVRQLPCNHLFHNDCIIPWLEQHDTCPVCRKSL 271
BLAST of CN189496 vs. ExPASy Swiss-Prot
Match: RN126_MOUSE (RING finger protein 126 OS=Mus musculus GN=Rnf126 PE=1 SV=1) HSP 1 Score: 82.4185 bits (202), Expect = 2.241e-15 Identity = 29/64 (45.31%), Postives = 45/64 (70.31%), Query Frame = -3 Query: 466 IESMPSIEILSGHVSSECHCAVCKEAFELGNEAREMPCKHIYHEDCILPWLKMRNSCPVCRQEL 657 I+++P++ + HV S C VCKE + LG R++PC H++H+ CI+PWL+ +SCPVCR+ L Sbjct: 212 IQALPTVPVTEEHVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSL 275
BLAST of CN189496 vs. ExPASy Swiss-Prot
Match: R126A_XENLA (RING finger protein 126-A OS=Xenopus laevis GN=rnf126-A PE=2 SV=1) HSP 1 Score: 82.4185 bits (202), Expect = 2.241e-15 Identity = 30/64 (46.88%), Postives = 46/64 (71.88%), Query Frame = -3 Query: 466 IESMPSIEILSGHVSSECHCAVCKEAFELGNEAREMPCKHIYHEDCILPWLKMRNSCPVCRQEL 657 I+++P+I+I HV S C VCKE + +G R++PC H++H DCI+PWL+ ++CPVCR+ L Sbjct: 209 IQALPTIQITEEHVGSGLECPVCKEDYTVGECVRQLPCNHLFHNDCIIPWLEQHDTCPVCRKSL 272
BLAST of CN189496 vs. ExPASy Swiss-Prot
Match: R126B_XENLA (RING finger protein 126-B OS=Xenopus laevis GN=rnf126-B PE=2 SV=1) HSP 1 Score: 81.6481 bits (200), Expect = 3.823e-15 Identity = 29/64 (45.31%), Postives = 45/64 (70.31%), Query Frame = -3 Query: 466 IESMPSIEILSGHVSSECHCAVCKEAFELGNEAREMPCKHIYHEDCILPWLKMRNSCPVCRQEL 657 I+++P+I+I HV C VCKE + +G R++PC H++H DCI+PWL+ ++CPVCR+ L Sbjct: 209 IQALPTIQITEEHVGFGLECPVCKEDYTVGESVRQLPCNHLFHNDCIIPWLEQHDTCPVCRKSL 272
BLAST of CN189496 vs. ExPASy Swiss-Prot
Match: RN126_HUMAN (RING finger protein 126 OS=Homo sapiens GN=RNF126 PE=1 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 6.521e-15 Identity = 28/64 (43.75%), Postives = 45/64 (70.31%), Query Frame = -3 Query: 466 IESMPSIEILSGHVSSECHCAVCKEAFELGNEAREMPCKHIYHEDCILPWLKMRNSCPVCRQEL 657 I+++P++ + HV S C VCK+ + LG R++PC H++H+ CI+PWL+ +SCPVCR+ L Sbjct: 210 IQALPTVPVTEEHVGSGLECPVCKDDYALGERVRQLPCNHLFHDGCIVPWLEQHDSCPVCRKSL 273
BLAST of CN189496 vs. ExPASy Swiss-Prot
Match: RN126_BOVIN (RING finger protein 126 OS=Bos taurus GN=RNF126 PE=2 SV=1) HSP 1 Score: 80.4925 bits (197), Expect = 8.517e-15 Identity = 28/64 (43.75%), Postives = 45/64 (70.31%), Query Frame = -3 Query: 466 IESMPSIEILSGHVSSECHCAVCKEAFELGNEAREMPCKHIYHEDCILPWLKMRNSCPVCRQEL 657 I+++P++ + HV S C VCK+ + LG R++PC H++H+ CI+PWL+ +SCPVCR+ L Sbjct: 213 IQALPTVPVTEEHVGSGLECPVCKDDYGLGEHVRQLPCNHLFHDGCIVPWLEQHDSCPVCRKSL 276
BLAST of CN189496 vs. ExPASy Swiss-Prot
Match: RN181_XENTR (E3 ubiquitin-protein ligase rnf181 OS=Xenopus tropicalis GN=rnf181 PE=2 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 1.230e-13 Identity = 29/65 (44.62%), Postives = 40/65 (61.54%), Query Frame = -3 Query: 463 IESMPSIEILSGHVSSECHCAVCKEAFELGNEAREMPCKHIYHEDCILPWLKMRNSCPVCRQELP 657 +ES+P + + + C VC FE G R++PC+H++H CILPWL NSCP+CR ELP Sbjct: 60 VESLPKVTVTPEQADAALKCPVCLLEFEEGETVRQLPCEHLFHSSCILPWLGKTNSCPLCRHELP 124
BLAST of CN189496 vs. ExPASy Swiss-Prot
Match: RN181_XENLA (E3 ubiquitin-protein ligase rnf181 OS=Xenopus laevis GN=rnf181 PE=2 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 2.098e-13 Identity = 29/65 (44.62%), Postives = 40/65 (61.54%), Query Frame = -3 Query: 463 IESMPSIEILSGHVSSECHCAVCKEAFELGNEAREMPCKHIYHEDCILPWLKMRNSCPVCRQELP 657 +ES+P + + + C VC FE G R++PC+H++H CILPWL NSCP+CR ELP Sbjct: 60 VESLPKVTVTPEQADAALKCPVCLLEFEEGETVRQLPCEHLFHSACILPWLGKTNSCPLCRHELP 124
BLAST of CN189496 vs. ExPASy Swiss-Prot
Match: CIP8_ARATH (E3 ubiquitin-protein ligase CIP8 OS=Arabidopsis thaliana GN=CIP8 PE=1 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 4.673e-13 Identity = 32/74 (43.24%), Postives = 43/74 (58.11%), Query Frame = -3 Query: 436 IESMPSIEILSGHVSSECHCAVCKEAFELGNEAREMPCKHIYHEDCILPWLKMRNSCPVCRQELPXXXXXXAEE 657 IE++ + E+ S CAVCK+ +G +++PC H YH DCI+PWL RNSCPVCR +L EE Sbjct: 238 IEALETFEVSSSEGEMVMVCAVCKDGMVMGETGKKLPCGHCYHGDCIVPWLGTRNSCPVCRFQLETDDAEYEEE 311
BLAST of CN189496 vs. ExPASy Swiss-Prot
Match: RN181_DROME (E3 ubiquitin-protein ligase CG7694 OS=Drosophila melanogaster GN=CG7694 PE=2 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 1.041e-12 Identity = 32/64 (50.00%), Postives = 41/64 (64.06%), Query Frame = -3 Query: 466 IESMPSIEILSGHVSSECHCAVCKEAFELGNEAREMPCKHIYHEDCILPWLKMRNSCPVCRQEL 657 I +P EI+ + C+VCKE E G + R +PCKH +HE+CIL WLK NSCP+CR EL Sbjct: 51 ILELPVHEIVKSDEGGDLECSVCKEPAEEGQKYRILPCKHEFHEECILLWLKKTNSCPLCRYEL 114 The following BLAST results are available for this feature:
BLAST of CN189496 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 17
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Sequences
The
following sequences are available for this feature:
EST sequence >CN189496 ID=CN189496; Name=CN189496; organism=Citrus sinensis; type=EST; length=659bpback to top |