CN189495

Overview
NameCN189495
Unique NameCN189495
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length738
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2082 contig Csv1_Contig2082:437..1174. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN189495 vs. ExPASy Swiss-Prot
Match: RN126_MOUSE (RING finger protein 126 OS=Mus musculus GN=Rnf126 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.397e-13
Identity = 30/70 (42.86%), Postives = 40/70 (57.14%), Query Frame = 1
Query:  142 PASKAXXXXXXXXXXXXGHVSSECHCAVCKEAFELGNEAREMPCKHIYHEDCILPWLKMRNSCPVCRQEL 351
            PA K              HV S   C VCKE + LG   R++PC H++H+ CI+PWL+  +SCPVCR+ L
Sbjct:  206 PADKEKIQALPTVPVTEEHVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSL 275          
BLAST of CN189495 vs. ExPASy Swiss-Prot
Match: RN126_XENTR (RING finger protein 126 OS=Xenopus tropicalis GN=rnf126 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.795e-13
Identity = 26/52 (50.00%), Postives = 37/52 (71.15%), Query Frame = 1
Query:  196 HVSSECHCAVCKEAFELGNEAREMPCKHIYHEDCILPWLKMRNSCPVCRQEL 351
            HV S   C VCKE + +G   R++PC H++H DCI+PWL+  ++CPVCR+ L
Sbjct:  220 HVGSGLECPVCKEDYTVGESVRQLPCNHLFHNDCIIPWLEQHDTCPVCRKSL 271          
BLAST of CN189495 vs. ExPASy Swiss-Prot
Match: RN126_HUMAN (RING finger protein 126 OS=Homo sapiens GN=RNF126 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.885e-13
Identity = 29/70 (41.43%), Postives = 40/70 (57.14%), Query Frame = 1
Query:  142 PASKAXXXXXXXXXXXXGHVSSECHCAVCKEAFELGNEAREMPCKHIYHEDCILPWLKMRNSCPVCRQEL 351
            PA K              HV S   C VCK+ + LG   R++PC H++H+ CI+PWL+  +SCPVCR+ L
Sbjct:  204 PADKEKIQALPTVPVTEEHVGSGLECPVCKDDYALGERVRQLPCNHLFHDGCIVPWLEQHDSCPVCRKSL 273          
BLAST of CN189495 vs. ExPASy Swiss-Prot
Match: RN126_BOVIN (RING finger protein 126 OS=Bos taurus GN=RNF126 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.291e-12
Identity = 29/70 (41.43%), Postives = 40/70 (57.14%), Query Frame = 1
Query:  142 PASKAXXXXXXXXXXXXGHVSSECHCAVCKEAFELGNEAREMPCKHIYHEDCILPWLKMRNSCPVCRQEL 351
            PA K              HV S   C VCK+ + LG   R++PC H++H+ CI+PWL+  +SCPVCR+ L
Sbjct:  207 PADKEKIQALPTVPVTEEHVGSGLECPVCKDDYGLGEHVRQLPCNHLFHDGCIVPWLEQHDSCPVCRKSL 276          
BLAST of CN189495 vs. ExPASy Swiss-Prot
Match: R126A_XENLA (RING finger protein 126-A OS=Xenopus laevis GN=rnf126-A PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.686e-12
Identity = 26/52 (50.00%), Postives = 37/52 (71.15%), Query Frame = 1
Query:  196 HVSSECHCAVCKEAFELGNEAREMPCKHIYHEDCILPWLKMRNSCPVCRQEL 351
            HV S   C VCKE + +G   R++PC H++H DCI+PWL+  ++CPVCR+ L
Sbjct:  221 HVGSGLECPVCKEDYTVGECVRQLPCNHLFHNDCIIPWLEQHDTCPVCRKSL 272          
BLAST of CN189495 vs. ExPASy Swiss-Prot
Match: R126B_XENLA (RING finger protein 126-B OS=Xenopus laevis GN=rnf126-B PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.876e-12
Identity = 25/52 (48.08%), Postives = 36/52 (69.23%), Query Frame = 1
Query:  196 HVSSECHCAVCKEAFELGNEAREMPCKHIYHEDCILPWLKMRNSCPVCRQEL 351
            HV     C VCKE + +G   R++PC H++H DCI+PWL+  ++CPVCR+ L
Sbjct:  221 HVGFGLECPVCKEDYTVGESVRQLPCNHLFHNDCIIPWLEQHDTCPVCRKSL 272          
BLAST of CN189495 vs. ExPASy Swiss-Prot
Match: RN181_XENLA (E3 ubiquitin-protein ligase rnf181 OS=Xenopus laevis GN=rnf181 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.407e-12
Identity = 33/86 (38.37%), Postives = 42/86 (48.84%), Query Frame = 1
Query:   97 LSQIDLTALSRPENLPASKAXXXXXXXXXXXXGHVSSECHCAVCKEAFELGNEAREMPCKHIYHEDCILPWLKMRNSCPVCRQELP 354
            L  +D T   +    PASK                 +   C VC   FE G   R++PC+H++H  CILPWL   NSCP+CR ELP
Sbjct:   39 LGAVDFTEWDQRLPPPASKKVVESLPKVTVTPEQADAALKCPVCLLEFEEGETVRQLPCEHLFHSACILPWLGKTNSCPLCRHELP 124          
BLAST of CN189495 vs. ExPASy Swiss-Prot
Match: RN181_XENTR (E3 ubiquitin-protein ligase rnf181 OS=Xenopus tropicalis GN=rnf181 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.093e-11
Identity = 32/86 (37.21%), Postives = 42/86 (48.84%), Query Frame = 1
Query:   97 LSQIDLTALSRPENLPASKAXXXXXXXXXXXXGHVSSECHCAVCKEAFELGNEAREMPCKHIYHEDCILPWLKMRNSCPVCRQELP 354
            L  +D T   +    PA+K                 +   C VC   FE G   R++PC+H++H  CILPWL   NSCP+CR ELP
Sbjct:   39 LGALDFTEWDQRLPPPAAKKVVESLPKVTVTPEQADAALKCPVCLLEFEEGETVRQLPCEHLFHSSCILPWLGKTNSCPLCRHELP 124          
BLAST of CN189495 vs. ExPASy Swiss-Prot
Match: RN181_DANRE (E3 ubiquitin-protein ligase rnf181 OS=Danio rerio GN=rnf181 PE=2 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 1.093e-11
Identity = 32/71 (45.07%), Postives = 36/71 (50.70%), Query Frame = 1
Query:  142 PASKAXXXXXXXXXXXXGHVSSECHCAVCKEAFELGNEAREMPCKHIYHEDCILPWLKMRNSCPVCRQELP 354
            PA+KA                    C VC   FE     REMPCKH++H  CILPWL   NSCP+CR ELP
Sbjct:   54 PAAKAVVQSLPVVIISPEQADKGVKCPVCLLEFEEQESVREMPCKHLFHTGCILPWLNKTNSCPLCRLELP 124          
BLAST of CN189495 vs. ExPASy Swiss-Prot
Match: CIP8_ARATH (E3 ubiquitin-protein ligase CIP8 OS=Arabidopsis thaliana GN=CIP8 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.427e-11
Identity = 28/55 (50.91%), Postives = 35/55 (63.64%), Query Frame = 1
Query:  217 CAVCKEAFELGNEAREMPCKHIYHEDCILPWLKMRNSCPVCRQELPXXXXXXXEE 381
            CAVCK+   +G   +++PC H YH DCI+PWL  RNSCPVCR +L        EE
Sbjct:  257 CAVCKDGMVMGETGKKLPCGHCYHGDCIVPWLGTRNSCPVCRFQLETDDAEYEEE 311          
The following BLAST results are available for this feature:
BLAST of CN189495 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
RN126_MOUSE3.397e-1342.86RING finger protein 126 OS=Mus musculus GN=Rnf126 ... [more]
RN126_XENTR5.795e-1350.00RING finger protein 126 OS=Xenopus tropicalis GN=r... [more]
RN126_HUMAN9.885e-1341.43RING finger protein 126 OS=Homo sapiens GN=RNF126 ... [more]
RN126_BOVIN1.291e-1241.43RING finger protein 126 OS=Bos taurus GN=RNF126 PE... [more]
R126A_XENLA1.686e-1250.00RING finger protein 126-A OS=Xenopus laevis GN=rnf... [more]
R126B_XENLA2.876e-1248.08RING finger protein 126-B OS=Xenopus laevis GN=rnf... [more]
RN181_XENLA6.407e-1238.37E3 ubiquitin-protein ligase rnf181 OS=Xenopus laev... [more]
RN181_XENTR1.093e-1137.21E3 ubiquitin-protein ligase rnf181 OS=Xenopus trop... [more]
RN181_DANRE1.093e-1145.07E3 ubiquitin-protein ligase rnf181 OS=Danio rerio ... [more]
CIP8_ARATH1.427e-1150.91E3 ubiquitin-protein ligase CIP8 OS=Arabidopsis th... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001P08_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001P08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189495 ID=CN189495; Name=CN189495; organism=Citrus sinensis; type=EST; length=738bp
GAGGACGGTCAGGGGTCAGAGTCAACTCTAAGGCCGATACCAGAAAGAGT
TTTAGGGTTCTTGATGGATTCAGGATTTCATCTGTTACTTCATCAACTGT
CTCAGATTGATCTAACGGCGCTATCCCGGCCGGAGAATCTGCCGGCATCA
AAAGCTTCGATCGAGTCGATGCCAAGCATAGAGATTTCGTCAGGCCACGT
AAGTTCAGAGTGTCACTGTGCAGTATGTAAAGAGGCGTTTGAGCTTGGAA
ACGAGGCGAGAGAGATGCCGTGCAAGCATATATACCATGAAGATTGTATT
CTCCCGTGGCTCAAAATGCGAAACTCGTGCCCGGTTTGCAGGCAAGAGCT
ACCAGCAGCCGCAGCCGCAGCCGCAGAAGAATCGTCGATGGCGCTGTCTA
TATGGTGGCTGCCGGGAGGTGGGTTTGCAGTGGGAAGATATGAGGGCCGG
AGAGTGGTGGCCGGAGCCGCAGAGAGAGGATTATCAATTGAGTTTGCTGA
TAATATGGATAATCAAACTAGCAGTAGCAGGGTTTTTCCTCAAAGAAGGG
TTGGCGGATTTTTTAGGGTTTTTCGTGGATTTGGATCCATTTTCAGGAGG
TTTAGGGGTAACAGTTCACGTTCTTCTCATTATCAAACTCATCACGTTCA
ACAGTCTGATCGTCCAAGTATTGTTTGAAAATTTAATTCGGGGATGATTT
TTAATCTTAGGAGTCACATATTTTTAATTATATATTAT
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