CN189493

Overview
NameCN189493
Unique NameCN189493
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length728
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3618 contig Csv1_Contig3618:642..1366. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN189493 vs. ExPASy Swiss-Prot
Match: QORL2_NEMVE (Quinone oxidoreductase-like protein 2 homolog OS=Nematostella vectensis GN=v1g238856 PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.276e-22
Identity = 59/152 (38.82%), Postives = 88/152 (57.89%), Query Frame = -3
Query:  259 EKIKFLKSLGVDHVVDLSNESVIPSVKEFLKARKLKGVDVLYDPVGGKLTKESLKLLNWGAQILVIGFASGEIPVIPANIALVKNWTVHGLYWGSYKIHRPHVLEDSLRELLLWAAKG-LITIHISHTYSPSEANLAFSAIEDRKVIGKVMI 711
            EK+  ++ +G    +D + E++   VKE        G +V+ + VGG + K+ LK + W   I+ +GFASGEIP IPANI LVKN +  GLYWG++  H P +L +S+ + L +   G L   +IS ++   + N AF  I  RK  GKV+I
Sbjct:  213 EKLVIVQEIGATATIDYTRENIKDKVKELTDGH---GANVIMEAVGGDVFKQCLKCIAWNGYIIPVGFASGEIPQIPANILLVKNCSAVGLYWGAHSKHDPQLLRESVDKTLEYFKNGKLKGPYISASFGLDKVNEAFQMILQRKSTGKVVI 361          
BLAST of CN189493 vs. ExPASy Swiss-Prot
Match: QORL2_RAT (Quinone oxidoreductase-like protein 2 OS=Rattus norvegicus PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.293e-17
Identity = 53/152 (34.87%), Postives = 81/152 (53.29%), Query Frame = -3
Query:  256 EKIKFLKSLGVDHVVDLSNESVIPSVKEFLKARKLKGVDVLYDPVGGKLTKESLKLLNWGAQILVIGFASGEIPVIPANIALVKNWTVHGLYWGSYKIHRPHVLEDSLRELLLWAAKGLITIHISHTYSPSEANLAFSAIEDRKVIGKVMIA 711
            EK K     G    V+ S  S+  +VK+ + +    GV+V  D VGG +  +SL+ L W  +I+V+GFA G I  +P+N+ L+KN +  GLYWG Y+     V   S+   L +  +GLI  H    +   + N AF  +  RK  GKV+++
Sbjct:  200 EKCKLAMQRGAQSGVNYSQGSLKDAVKKLVGS---SGVNVAIDMVGGDVFLDSLRSLAWEGRIVVLGFAGGNIASVPSNLLLLKNISAMGLYWGRYQHQDFAVFSKSMSTALQYCQQGLIHPHTGAVFKLEKVNDAFLHVMQRKSTGKVLLS 348          
BLAST of CN189493 vs. ExPASy Swiss-Prot
Match: QORL2_BOVIN (Quinone oxidoreductase-like protein 2 OS=Bos taurus PE=2 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 2.879e-17
Identity = 53/152 (34.87%), Postives = 81/152 (53.29%), Query Frame = -3
Query:  256 EKIKFLKSLGVDHVVDLSNESVIPSVKEFLKARKLKGVDVLYDPVGGKLTKESLKLLNWGAQILVIGFASGEIPVIPANIALVKNWTVHGLYWGSYKIHRPHVLEDSLRELLLWAAKGLITIHISHTYSPSEANLAFSAIEDRKVIGKVMIA 711
            EK +     G    V+ S  S+  +V + + +    GV+V+ D VGG +  E+L+ L +  +I+V+GFA G I  +PAN+ L+KN +  GLYWG Y+     V   SL   L +  +G I  HI   +   E N AF  +  RK  GKV+++
Sbjct:  199 EKCQLAMQSGAQSSVNYSRGSLKEAVGKLVGSG---GVNVVIDMVGGDIFLEALRSLAYEGRIVVVGFAGGTIASVPANLLLLKNVSAMGLYWGRYRQQNFPVFSRSLSSALQYCQEGRIQPHIGEVFELEEVNDAFLHVTQRKSTGKVLLS 347          
BLAST of CN189493 vs. ExPASy Swiss-Prot
Match: QORL2_MOUSE (Quinone oxidoreductase-like protein 2 OS=Mus musculus PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.761e-17
Identity = 53/152 (34.87%), Postives = 80/152 (52.63%), Query Frame = -3
Query:  256 EKIKFLKSLGVDHVVDLSNESVIPSVKEFLKARKLKGVDVLYDPVGGKLTKESLKLLNWGAQILVIGFASGEIPVIPANIALVKNWTVHGLYWGSYKIHRPHVLEDSLRELLLWAAKGLITIHISHTYSPSEANLAFSAIEDRKVIGKVMIA 711
            EK K     G    V+ S  S+  +VK+   +    GV+V  D VGG +  ESL+ L W  +I+V+GFA G I  +P+N+ L+KN +  GLYWG Y+     V   S+   + +  +GLI  H    +   + N AF  +  RK  GKV+++
Sbjct:  200 EKCKLAVQRGAQFSVNYSQGSLRDAVKKLAGSG---GVNVAIDMVGGDVFLESLRSLAWEGRIVVLGFAGGNIASVPSNLLLLKNISAMGLYWGRYQHQDFAVFSKSMSTAMQYCQQGLIHPHTGAVFKLEKINDAFLHVMQRKSTGKVLLS 348          
The following BLAST results are available for this feature:
BLAST of CN189493 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
QORL2_NEMVE2.276e-2238.82Quinone oxidoreductase-like protein 2 homolog OS=N... [more]
QORL2_RAT1.293e-1734.87Quinone oxidoreductase-like protein 2 OS=Rattus no... [more]
QORL2_BOVIN2.879e-1734.87Quinone oxidoreductase-like protein 2 OS=Bos tauru... [more]
QORL2_MOUSE3.761e-1734.87Quinone oxidoreductase-like protein 2 OS=Mus muscu... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS06_0001P07_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001P07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189493 ID=CN189493; Name=CN189493; organism=Citrus sinensis; type=EST; length=728bp
GGCCGCGTGCCACTACGTATTATTTCGCATTCATTGTTATCCAAATTTTG
ACAACCTTAATTGCCAGGGACTTGCATTCTCATGCTTCACAACAAAGTCA
TAGATTTTCTCTCATATAAGAGCAACTAAATGTGCCATGTATTAATTAAG
GCTAATTTTGATGATCAAGAGCCGCAGAAACATTCTCCATTGCATACCAG
CCCAGTAATGATGATCAACTTAAAGCCTAGGCCTGATACTTTTCATGTCA
TCAAAAGCAATCATCACCTTTCCAATTACTTTCCTATCTTCAATGGCAGA
GAAGGCAAGGTTGGCCTCTGATGGACTGTAAGTATGAGAAATATGGATGG
TAATCAAGCCCTTTGCAGCCCATAAGAGTAACTCCCTAAGAGAATCTTCA
AGCACATGAGGGCGATGTATTTTATAGCTACCCCAGTAAAGTCCGTGTAC
CGTCCAGTTCTTAACAAGAGCAATATTAGCAGGGATTACTGGAATCTCCC
CACTTGCAAAGCCAATGACTAAGATTTGAGCACCCCAGTTCAAAAGCTTC
AAGGATTCTTTAGTAAGCTTGCCTCCAACAGGATCATATAGAACATCAAC
CCCTTTGAGTTTCCTTGCCTTGAGGAACTCTTTGACACTCGGAATGACAC
TCTCATTGCTCAAGTCAACTACATGATCGACGCCCAATGACTTCAAAAAT
TTTATCTTTTCAGCACCCCTAGCAACGG
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