CN189488

Overview
NameCN189488
Unique NameCN189488
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length752
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10366 contig Csv1_Contig10366:696..1447. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN189488 vs. ExPASy Swiss-Prot
Match: P5CS_SOLLC (Delta-1-pyrroline-5-carboxylate synthetase OS=Solanum lycopersicum GN=PRO2 PE=2 SV=1)

HSP 1 Score: 292.352 bits (747), Expect = 1.822e-78
Identity = 139/181 (76.80%), Postives = 158/181 (87.29%), Query Frame = -2
Query:  209 KIDYPAACNAMETLLVHKDLACNGALNELVVELQHEGVGLFGGPRASKLLKIPETRLFHHEYNSMVCTVEIVDDVRAAIDHIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWILRGNGHVVDGDQGVVYTHKNLALQ 751
            KIDYPAACNAMETLLVHKDLA NG LN+L+VELQ +GV L+GGP+AS LL IPE R F HEY+S+ CTVE+V+DV AAIDHIHQHGSAHTD I+ EDQ+VAE FL QVDSAAVFHNASTRF DG RFGLGAEVGIST RIHARGPVGVEGLLTT+W+ RG+G +VDGD+ +VY+HK+L  Q
Sbjct:  536 KIDYPAACNAMETLLVHKDLAQNGGLNDLIVELQTKGVSLYGGPKASSLLMIPEARTFRHEYSSLACTVEVVEDVYAAIDHIHQHGSAHTDSIITEDQEVAEVFLRQVDSAAVFHNASTRFSDGFRFGLGAEVGISTGRIHARGPVGVEGLLTTKWLARGSGQIVDGDKSIVYSHKDLTQQ 716          
BLAST of CN189488 vs. ExPASy Swiss-Prot
Match: P5CS2_ARATH (Delta-1-pyrroline-5-carboxylate synthetase B OS=Arabidopsis thaliana GN=P5CSB PE=2 SV=1)

HSP 1 Score: 290.426 bits (742), Expect = 6.923e-78
Identity = 141/178 (79.21%), Postives = 154/178 (86.52%), Query Frame = -2
Query:  218 KIDYPAACNAMETLLVHKDLACNGALNELVVELQHEGVGLFGGPRASKLLKIPETRLFHHEYNSMVCTVEIVDDVRAAIDHIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWILRGNGHVVDGDQGVVYTHKNL 751
            K+DYPAACNAMETLLVHKDL  NG L++L+  LQ +GV L+GGPRAS  L IPET+ FHHEY+S  CTVEIV+DV  AIDHIHQHGSAHTDCIV ED +VAE FL QVDSAAVFHNASTRF DG RFGLGAEVGISTSRIHARGPVGVEGLLTTRWI+RG G VVDGD G+VYTHK+L
Sbjct:  536 KLDYPAACNAMETLLVHKDLEQNGFLDDLIYVLQTKGVTLYGGPRASAKLNIPETKSFHHEYSSKACTVEIVEDVYGAIDHIHQHGSAHTDCIVTEDSEVAEIFLRQVDSAAVFHNASTRFSDGFRFGLGAEVGISTSRIHARGPVGVEGLLTTRWIMRGKGQVVDGDNGIVYTHKDL 713          
BLAST of CN189488 vs. ExPASy Swiss-Prot
Match: P5CS_ACTDE (Delta-1-pyrroline-5-carboxylate synthetase OS=Actinidia deliciosa PE=2 SV=1)

HSP 1 Score: 287.73 bits (735), Expect = 4.488e-77
Identity = 139/178 (78.09%), Postives = 155/178 (87.08%), Query Frame = -2
Query:  218 KIDYPAACNAMETLLVHKDLACNGALNELVVELQHEGVGLFGGPRASKLLKIPETRLFHHEYNSMVCTVEIVDDVRAAIDHIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWILRGNGHVVDGDQGVVYTHKNL 751
            K DYPAACNAMETLLVHKDL  NG L+EL+VELQ +GV + GGPRAS LL IPE R  HHEY+S+ CT+EIVDDV AAIDHIH+HGSAHTD I+ ED +VAE FL QVDS++V HNASTRF DGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWI RG+G VVDGD+G+VYTHK+L
Sbjct:  536 KTDYPAACNAMETLLVHKDLVQNGCLDELIVELQIKGVVIHGGPRASSLLHIPEARSLHHEYSSLACTIEIVDDVYAAIDHIHRHGSAHTDSIITEDHEVAEIFLRQVDSSSVLHNASTRFSDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWIARGSGQVVDGDKGIVYTHKDL 713          
BLAST of CN189488 vs. ExPASy Swiss-Prot
Match: P5CS1_ARATH (Delta-1-pyrroline-5-carboxylate synthetase A OS=Arabidopsis thaliana GN=P5CSA PE=1 SV=1)

HSP 1 Score: 286.574 bits (732), Expect = 9.997e-77
Identity = 136/182 (74.73%), Postives = 154/182 (84.62%), Query Frame = -2
Query:  206 KIDYPAACNAMETLLVHKDLACNGALNELVVELQHEGVGLFGGPRASKLLKIPETRLFHHEYNSMVCTVEIVDDVRAAIDHIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWILRGNGHVVDGDQGVVYTHKNLALQS 751
            K+DYPAACNAMETLLVHKDL  N  LNEL+  LQ  GV L+GGPRASK+L IPE R F+HEY +  CTVE+V+DV  AIDHIH+HGSAHTDCIV ED +VAE FL QVDSAAVFHNASTRF DG RFGLGAEVG+ST RIHARGPVGVEGLLTTRWI+RG G VVDGD G+VYTH+++ +Q+
Sbjct:  536 KLDYPAACNAMETLLVHKDLEQNAVLNELIFALQSNGVTLYGGPRASKILNIPEARSFNHEYCAKACTVEVVEDVYGAIDHIHRHGSAHTDCIVTEDHEVAELFLRQVDSAAVFHNASTRFSDGFRFGLGAEVGVSTGRIHARGPVGVEGLLTTRWIMRGKGQVVDGDNGIVYTHQDIPIQA 717          
BLAST of CN189488 vs. ExPASy Swiss-Prot
Match: P5CS_ORYSJ (Delta-1-pyrroline-5-carboxylate synthetase OS=Oryza sativa subsp. japonica GN=P5CS PE=2 SV=2)

HSP 1 Score: 278.485 bits (711), Expect = 2.723e-74
Identity = 136/181 (75.14%), Postives = 154/181 (85.08%), Query Frame = -2
Query:  209 KIDYPAACNAMETLLVHKDLACNGALNELVVELQHEGVGLFGGPRASKLLKIPETRLFHHEYNSMVCTVEIVDDVRAAIDHIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWILRGNGHVVDGDQGVVYTHKNLALQ 751
            KIDYPAACNAMETLLVHKDL  +  L++++V L+ EGV ++GGP A K L  P+   FHHEY+SM CTVE VDDV++AIDHIH++GSAHTDCIV  D KVAETFL +VDSAAVFHNASTRF DGARFGLGAEVGIST RIHARGPVGVEGLLTTRWILRG G VV+GD+ VVYTHK+L LQ
Sbjct:  536 KIDYPAACNAMETLLVHKDLMKSPGLDDILVALKTEGVNIYGGPIAHKALGFPKAVSFHHEYSSMACTVEFVDDVQSAIDHIHRYGSAHTDCIVTTDDKVAETFLRRVDSAAVFHNASTRFSDGARFGLGAEVGISTGRIHARGPVGVEGLLTTRWILRGRGQVVNGDKDVVYTHKSLPLQ 716          
BLAST of CN189488 vs. ExPASy Swiss-Prot
Match: P5CS_MESCR (Delta-1-pyrroline-5-carboxylate synthetase OS=Mesembryanthemum crystallinum GN=P5CS PE=2 SV=1)

HSP 1 Score: 277.715 bits (709), Expect = 4.644e-74
Identity = 138/182 (75.82%), Postives = 154/182 (84.62%), Query Frame = -2
Query:  212 KIDYPAACNAMETLLVHKDLACNGALNELVVELQHEGVGLFGGPRASKL--LKIPETRLFHHEYNSMVCTVEIVDDVRAAIDHIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWILRGNGHVVDGDQGVVYTHKNLAL 751
            K DYPAACNAMETLLVHKDLA NG LN+L+V+L+ EGV +FGGPR   L    I  T+ F+ EY+S  CTVEIVDDV AAI+HI+ HGSAHTDCI+AED KVAETFL  VDSAAV HNASTRFCDG RFGLGAEVGISTSRIHARGPVGVEGLLTTRW+L+G+G VV GD+GVVYTHK+L L
Sbjct:  533 KTDYPAACNAMETLLVHKDLAENGGLNDLIVDLRTEGVTMFGGPRIDALQEFNIQATQTFNREYSSPACTVEIVDDVYAAIEHINHHGSAHTDCIIAEDHKVAETFLQLVDSAAVLHNASTRFCDGFRFGLGAEVGISTSRIHARGPVGVEGLLTTRWVLKGSGQVVHGDKGVVYTHKDLPL 714          
BLAST of CN189488 vs. ExPASy Swiss-Prot
Match: ALH13_CAEEL (Probable delta-1-pyrroline-5-carboxylate synthetase OS=Caenorhabditis elegans GN=alh-13 PE=2 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 1.231e-50
Identity = 102/182 (56.04%), Postives = 125/182 (68.68%), Query Frame = -2
Query:  218 KIDYPAACNAMETLLVHKDLACNGALNELVVELQHEGVGLFGGPRASKLLKI--PETRLFHHEYNSMVCTVEIVDDVRAAIDHIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWILRGNGHVVDGDQG--VVYTHKNL 751
            K DYP+ACNA ET+L+HKDLA     + L    + EGV L  GP+ + LLK   P       EY S+ CT+E+VD+V  A+ HI ++GS HT+ I+ E+   AE FL  VDSA  FHNASTRF DG RFGLGAEVGIST RIHARGPVGVEGLLTT+W+LRG GH+V+  +     Y H+NL
Sbjct:  599 KCDYPSACNAAETILIHKDLATAPFFDSLCSMFKAEGVKLHAGPKLAALLKFAPPPAESMSFEYGSLECTLEVVDNVEEAVAHIIRYGSGHTESIITENTNTAEHFLKHVDSACAFHNASTRFADGYRFGLGAEVGISTGRIHARGPVGVEGLLTTKWLLRGEGHLVEDFKNGKYSYLHENL 780          
BLAST of CN189488 vs. ExPASy Swiss-Prot
Match: P5CS_HUMAN (Delta-1-pyrroline-5-carboxylate synthetase OS=Homo sapiens GN=ALDH18A1 PE=1 SV=2)

HSP 1 Score: 195.282 bits (495), Expect = 3.031e-49
Identity = 101/185 (54.59%), Postives = 130/185 (70.27%), Query Frame = -2
Query:  212 KIDYPAACNAMETLLVHKDLACNGALNELVVELQHEGVGLFGGPRASKLLKIP--ETRLFHHEYNSMVCTVEIVDDVRAAIDHIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWILRGNGHVVD--GDQG-VVYTHKNLAL 751
            K +YPAACNA+ETLL+H+DL      ++++  L+ E V +  GP+ +  L     E +    EY  +   +E+VD+V+ AIDHIH++GS+HTD IV ED+  AE FL  VDSA VF NASTRF DG RFGLGAEVGISTSRIHARGPVG+EGLLTT+W+LRG  HVV    + G + Y H+NL +
Sbjct:  605 KCEYPAACNALETLLIHRDLLRTPLFDQIIDMLRVEQVKIHAGPKFASYLTFSPSEVKSLRTEYGDLELCIEVVDNVQDAIDHIHKYGSSHTDVIVTEDENTAEFFLQHVDSACVFWNASTRFSDGYRFGLGAEVGISTSRIHARGPVGLEGLLTTKWLLRGKDHVVSDFSEHGSLKYLHENLPI 789          
BLAST of CN189488 vs. ExPASy Swiss-Prot
Match: P5CS_MOUSE (Delta-1-pyrroline-5-carboxylate synthetase OS=Mus musculus GN=Aldh18a1 PE=2 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 3.959e-49
Identity = 101/183 (55.19%), Postives = 129/183 (70.49%), Query Frame = -2
Query:  218 KIDYPAACNAMETLLVHKDLACNGALNELVVELQHEGVGLFGGPRASKLLKIP--ETRLFHHEYNSMVCTVEIVDDVRAAIDHIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWILRGNGHVVD--GDQG-VVYTHKNL 751
            K +YPAACNA+ETLL+H+DL      ++++  L+ E V +  GP+ +  L     E +    EY  +   +E+VD V+ AIDHIH++GS+HTD IV E++K AE FL  VDSA VF NASTRF DG RFGLGAEVGISTSRIHARGPVG+EGLLTT+W+LRG  HVV    + G + Y H+NL
Sbjct:  605 KCEYPAACNALETLLIHRDLLRTPLFDQIIDMLRVEQVKIHAGPKFASYLTFSPSEVKSLRTEYGDLEVCIEVVDSVQEAIDHIHKYGSSHTDVIVTENEKTAEFFLQHVDSACVFWNASTRFSDGYRFGLGAEVGISTSRIHARGPVGLEGLLTTKWLLRGQDHVVSDFSEHGSLKYLHENL 787          
BLAST of CN189488 vs. ExPASy Swiss-Prot
Match: P5CS_PONAB (Delta-1-pyrroline-5-carboxylate synthetase OS=Pongo abelii GN=ALDH18A1 PE=2 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 1.152e-48
Identity = 100/185 (54.05%), Postives = 130/185 (70.27%), Query Frame = -2
Query:  212 KIDYPAACNAMETLLVHKDLACNGALNELVVELQHEGVGLFGGPRASKLLKIP--ETRLFHHEYNSMVCTVEIVDDVRAAIDHIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWILRGNGHVVD--GDQG-VVYTHKNLAL 751
            K +YPAACNA+ETLL+H+DL      ++++  L+ E V +  GP+ +  L     E +    EY  +   +E+VD+V+ AIDHIH++GS+HTD IV E++  AE FL  VDSA VF NASTRF DG RFGLGAEVGISTSRIHARGPVG+EGLLTT+W+LRG  HVV    + G + Y H+NL +
Sbjct:  605 KCEYPAACNALETLLIHRDLLRTPLFDQIIDMLRVEQVKIHAGPKFASYLTFSPSEVKSLRTEYGDLELCIEVVDNVQDAIDHIHKYGSSHTDVIVTENENTAEFFLQHVDSACVFWNASTRFSDGYRFGLGAEVGISTSRIHARGPVGLEGLLTTKWLLRGKDHVVSDFSEHGSLKYLHENLPI 789          
The following BLAST results are available for this feature:
BLAST of CN189488 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
P5CS_SOLLC1.822e-7876.80Delta-1-pyrroline-5-carboxylate synthetase OS=Sola... [more]
P5CS2_ARATH6.923e-7879.21Delta-1-pyrroline-5-carboxylate synthetase B OS=Ar... [more]
P5CS_ACTDE4.488e-7778.09Delta-1-pyrroline-5-carboxylate synthetase OS=Acti... [more]
P5CS1_ARATH9.997e-7774.73Delta-1-pyrroline-5-carboxylate synthetase A OS=Ar... [more]
P5CS_ORYSJ2.723e-7475.14Delta-1-pyrroline-5-carboxylate synthetase OS=Oryz... [more]
P5CS_MESCR4.644e-7475.82Delta-1-pyrroline-5-carboxylate synthetase OS=Mese... [more]
ALH13_CAEEL1.231e-5056.04Probable delta-1-pyrroline-5-carboxylate synthetas... [more]
P5CS_HUMAN3.031e-4954.59Delta-1-pyrroline-5-carboxylate synthetase OS=Homo... [more]
P5CS_MOUSE3.959e-4955.19Delta-1-pyrroline-5-carboxylate synthetase OS=Mus ... [more]
P5CS_PONAB1.152e-4854.05Delta-1-pyrroline-5-carboxylate synthetase OS=Pong... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001P03_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001P03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189488 ID=CN189488; Name=CN189488; organism=Citrus sinensis; type=EST; length=752bp
GCGTTAAATTCTGAACTTCATTATTGACTTGAGGAAACTTTCTATTACAT
GAGGCTCTACCCCAAGCAAGATCCAAGTAATAAAACTAAAGATCTTAATA
AATAACATCAGCAAAGTGCAATAAATATACACCAAGTAAATAGAGTCTCA
GAAGCAGCTAGCATAATATTATACAAATGACATGGTTTAGAACCATAAGT
TACTAGGATTGCAAGGCAAGATTCTTGTGGGTATAGACGACTCCTTGATC
ACCATCTACGACGTGTCCATTCCCTCTCAATATCCATCGAGTAGTTAGCA
ATCCTTCAACTCCGACTGGACCGCGAGCATGAATCCTGCTTGTGCTTATT
CCAACCTCTGCACCAAGTCCAAATCGTGCTCCATCACAGAATCGTGTACT
TGCATTATGAAATACTGCAGCACTGTCAACTTGACATAAAAATGTTTCAG
CAACTTTTTGATCTTCTGCAACAATGCAATCAGTATGGGCACTTCCATGT
TGATGAATATGGTCAATAGCAGCACGCACATCGTCCACAATTTCAACCGT
ACAAACCATTGAGTTGTACTCATGATGGAATAAGCGTGTCTCAGGAATTT
TTAGTAATTTACTTGCTCTTGGTCCGCCAAATAAACCGACACCTTCATGT
TGAAGTTCTACAACAAGCTCATTGAGTGCACCATTGCATGCTAAATCCTT
GTGTACCAGAAGAGTTTCCATAGCATTGCAGGCTGCAGGATAGTCTATCT
TC
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