CN189486

Overview
NameCN189486
Unique NameCN189486
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length697
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11532 contig Csv1_Contig11532:151..847. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN189486 vs. ExPASy Swiss-Prot
Match: AOC4_ARATH (Allene oxide cyclase 4, chloroplastic OS=Arabidopsis thaliana GN=AOC4 PE=2 SV=1)

HSP 1 Score: 225.713 bits (574), Expect = 1.840e-58
Identity = 115/210 (54.76%), Postives = 149/210 (70.95%), Query Frame = 2
Query:   74 MACSSAALRTISSASVKLANSTSLTKSSSIL-VPFKLNNPSLITQCPHLQAATSCNFTVPKRSFTCRSQANSSDDPRPTKVQELHVYEINERDRGSPAYLRLSQKPVN-SLGDLVPFSNKLYTGDLQKRVGITAGICILIENKPEKKGDRYEATYSFYFGDYGHIAVQGPYLTYEDTYLAVTGGSGIFEGVYGQVKLQQLVFPF*LFYTF 697
            M  +S+A  +IS  +++  +    +  S+ L      +N  + +  P L        +     F     ++S+D  RPTK+QEL+VYE NE DR SPA L+L +KP    LGDLVPF+NKLYTGDL KR+GITAG+C+LI++ PEKKGDR+EA+YSFYFGDYGHI+VQGPYLTYEDT+LA+TGGSG+FEG YGQVKL+QLV+P  LFYTF
Sbjct:    1 MIMASSAAASISMITLRNLSRNHQSHQSTFLGFSRSFHNQRISSNSPGLSTRARSTTSSTGGFFRTICSSSSNDYSRPTKIQELNVYEFNEGDRNSPAVLKLGKKPDQLCLGDLVPFTNKLYTGDLTKRIGITAGLCVLIQHVPEKKGDRFEASYSFYFGDYGHISVQGPYLTYEDTFLAITGGSGVFEGAYGQVKLRQLVYPTKLFYTF 210          
BLAST of CN189486 vs. ExPASy Swiss-Prot
Match: AOC3_ARATH (Allene oxide cyclase 3, chloroplastic OS=Arabidopsis thaliana GN=AOC3 PE=2 SV=1)

HSP 1 Score: 223.016 bits (567), Expect = 1.193e-57
Identity = 122/217 (56.22%), Postives = 156/217 (71.89%), Query Frame = 2
Query:   74 MACSSAALRTISSASVKLANSTSLTKSS--SILVPFK--LNNPSLITQCPHL----QAATSCNFTVPKRSFTCRSQANSSDDPRPTKVQELHVYEINERDRGSPAYLRLSQKPVN-SLGDLVPFSNKLYTGDLQKRVGITAGICILIENKPEKKGDRYEATYSFYFGDYGHIAVQGPYLTYEDTYLAVTGGSGIFEGVYGQVKLQQLVFPF*LFYTF 697
            MA SSAA+ ++ S S+   N+ S    S  S L+ F     N  + +  P      ++ TS N  V +  F   +    +++ RP+K+QEL+VYE+NE DR SPA L+L +KP    LGDLVPF+NKLYTGDL+KRVGITAG+C+LI++ PEK GDR+EA+YSFYFGDYGH++VQG YLTYEDT+LAVTGGSGIFEG YGQVKL+QLV+P  LFYTF
Sbjct:    1 MASSSAAM-SLESISMTTLNNLSRNHQSHRSSLLGFSRSFQNLGISSNGPDFSSRSRSTTSKNLNVTRAFFW--NWGKKTENSRPSKIQELNVYELNEGDRNSPAVLKLGKKPTELCLGDLVPFTNKLYTGDLKKRVGITAGLCVLIQHVPEKSGDRFEASYSFYFGDYGHLSVQGQYLTYEDTFLAVTGGSGIFEGAYGQVKLRQLVYPTKLFYTF 214          
BLAST of CN189486 vs. ExPASy Swiss-Prot
Match: AOC2_ARATH (Allene oxide cyclase 2, chloroplastic OS=Arabidopsis thaliana GN=AOC2 PE=1 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 3.470e-57
Identity = 118/211 (55.92%), Postives = 151/211 (71.56%), Query Frame = 2
Query:   74 MACSSAALRTISSASVKLANSTSLTKSSSILVPFK-LNNPSLITQCPHLQAATSCNFTVPKRSFTCR--SQANSSDDPRPTKVQELHVYEINERDRGSPAYLRLSQKPVNSLGDLVPFSNKLYTGDLQKRVGITAGICILIENKPEKKGDRYEATYSFYFGDYGHIAVQGPYLTYEDTYLAVTGGSGIFEGVYGQVKLQQLVFPF*LFYTF 697
            MA S+ +L++IS  ++   +       SS+L   K   N  + +        +S  FT  K     R  SQ  + ++PRP+KVQEL VYEINE DR SP  L+ +   +  LGDLVPF+NKLYTGDL+KRVGITAG+C++IE+ PEKKG+R+EATYSFYFGDYGH++VQGPYLTYED++LA+TGG+GIFEG YGQVKLQQLV+P  LFYTF
Sbjct:    1 MASSAVSLQSISMTTLNNLSCNQQFHRSSLLGSSKSFQNLGISSNGSDFSYPSS--FTAKKNLTASRALSQNGNIENPRPSKVQELSVYEINELDRHSPKILKNAFSLMFGLGDLVPFTNKLYTGDLKKRVGITAGLCVVIEHVPEKKGERFEATYSFYFGDYGHLSVQGPYLTYEDSFLAITGGAGIFEGAYGQVKLQQLVYPTKLFYTF 209          
BLAST of CN189486 vs. ExPASy Swiss-Prot
Match: AOC1_ARATH (Allene oxide cyclase 1, chloroplastic OS=Arabidopsis thaliana GN=AOC1 PE=1 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 7.731e-57
Identity = 117/212 (55.19%), Postives = 154/212 (72.64%), Query Frame = 2
Query:   74 MACSSAALRTISSASVK-LANSTSLTKSSSILVPFKLNNPSLITQCPHLQAATSCNFTVPKRSFTCRSQANS---SDDPRPTKVQELHVYEINERDRGSPAYLRLSQKPVNSLGDLVPFSNKLYTGDLQKRVGITAGICILIENKPEKKGDRYEATYSFYFGDYGHIAVQGPYLTYEDTYLAVTGGSGIFEGVYGQVKLQQLVFPF*LFYTF 697
            MA S+ +L++IS  ++  L+ S    +SS +       N  + +  P   + TS  FT  K+    R+ + +   +++PRP+KVQEL VYEIN+ DR SP  L+ +      LGDLVPF+NKLYTGDL+KRVGITAG+C++IE+ PEK GDR+EATYSFYFGDYGH++VQGPYLTYED++LA+TGG+GIFEG YGQVKLQQLV+P  LFYTF
Sbjct:    1 MASSTISLQSISMTTLNNLSYSKQFHRSSLLGFSKSFQNFGISSNGPGSSSPTS--FTPKKKLTPTRALSQNLGNTENPRPSKVQELSVYEINDLDRHSPKILKNAFSFRFGLGDLVPFTNKLYTGDLKKRVGITAGLCVVIEHVPEKNGDRFEATYSFYFGDYGHLSVQGPYLTYEDSFLAITGGAGIFEGAYGQVKLQQLVYPTKLFYTF 210          
The following BLAST results are available for this feature:
BLAST of CN189486 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
AOC4_ARATH1.840e-5854.76Allene oxide cyclase 4, chloroplastic OS=Arabidops... [more]
AOC3_ARATH1.193e-5756.22Allene oxide cyclase 3, chloroplastic OS=Arabidops... [more]
AOC2_ARATH3.470e-5755.92Allene oxide cyclase 2, chloroplastic OS=Arabidops... [more]
AOC1_ARATH7.731e-5755.19Allene oxide cyclase 1, chloroplastic OS=Arabidops... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS06_0001P02_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001P02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189486 ID=CN189486; Name=CN189486; organism=Citrus sinensis; type=EST; length=697bp
GCTCACTTTCTCTCCTCCCAAACAGTCAAACACTCATTTAACAACAGAAA
TTATCAGCAAAAGATTATCCCCAATGGCTTGTTCAAGCGCTGCTTTGAGA
ACCATCTCTTCTGCTTCTGTCAAGCTAGCCAATTCAACATCACTAACCAA
ATCATCATCAATTTTAGTACCATTTAAGCTGAATAATCCTTCTCTAATCA
CTCAATGCCCCCACCTTCAAGCCGCCACAAGCTGCAACTTCACAGTACCC
AAAAGATCTTTCACTTGCAGAAGCCAAGCTAACTCATCAGATGATCCCAG
ACCCACCAAGGTTCAAGAACTTCATGTGTATGAGATCAACGAGCGAGATC
GTGGCAGTCCAGCTTATCTTCGCTTGAGCCAGAAACCTGTGAATTCACTT
GGTGATCTTGTCCCTTTTAGCAACAAATTATATACTGGAGACCTGCAAAA
GAGGGTGGGAATAACAGCGGGTATATGCATTTTGATCGAAAACAAACCAG
AAAAGAAAGGTGACCGATATGAAGCAACTTACAGCTTCTACTTTGGAGAC
TATGGTCACATAGCTGTGCAAGGACCGTATTTGACCTATGAGGACACTTA
TCTGGCTGTGACTGGTGGATCCGGCATCTTCGAGGGAGTGTATGGGCAGG
TTAAGCTGCAGCAACTTGTGTTTCCTTTTTAGCTGTTTTACACATTT
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