CN189485

Overview
NameCN189485
Unique NameCN189485
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length700
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11532 contig Csv1_Contig11532:428..1121. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN189485 vs. ExPASy Swiss-Prot
Match: AOC4_ARATH (Allene oxide cyclase 4, chloroplastic OS=Arabidopsis thaliana GN=AOC4 PE=2 SV=1)

HSP 1 Score: 268.085 bits (684), Expect = 3.260e-71
Identity = 129/185 (69.73%), Postives = 156/185 (84.32%), Query Frame = -1
Query:  152 ANSSDDPRPTKVQELHVYEINERDRGSPAYLRLSQKPVN-SLGDLVPFSNKLYTGDLQKRVGITAGICILIENKPEKKGDRYEATYSFYFGDYGHIAVQGPYLTYEDTYLAVTGGSGIFEGVYGQVKLQQLVFPFKLFYTFYLKGI-KDLPEVLLGKPVDPHPGVEPSPAAKACEPGAAIDNFTN 700
            ++S+D  RPTK+QEL+VYE NE DR SPA L+L +KP    LGDLVPF+NKLYTGDL KR+GITAG+C+LI++ PEKKGDR+EA+YSFYFGDYGHI+VQGPYLTYEDT+LA+TGGSG+FEG YGQVKL+QLV+P KLFYTFYLKG+  DLP  L GK V+P   V+P+  A+A +PGA I NFTN
Sbjct:   70 SSSNDYSRPTKIQELNVYEFNEGDRNSPAVLKLGKKPDQLCLGDLVPFTNKLYTGDLTKRIGITAGLCVLIQHVPEKKGDRFEASYSFYFGDYGHISVQGPYLTYEDTFLAITGGSGVFEGAYGQVKLRQLVYPTKLFYTFYLKGVAADLPVELTGKHVEPSKEVKPAAEAQATQPGATIANFTN 254          
BLAST of CN189485 vs. ExPASy Swiss-Prot
Match: AOC2_ARATH (Allene oxide cyclase 2, chloroplastic OS=Arabidopsis thaliana GN=AOC2 PE=1 SV=1)

HSP 1 Score: 263.462 bits (672), Expect = 8.031e-70
Identity = 125/180 (69.44%), Postives = 150/180 (83.33%), Query Frame = -1
Query:  152 DDPRPTKVQELHVYEINERDRGSPAYLRLSQKPVNSLGDLVPFSNKLYTGDLQKRVGITAGICILIENKPEKKGDRYEATYSFYFGDYGHIAVQGPYLTYEDTYLAVTGGSGIFEGVYGQVKLQQLVFPFKLFYTFYLKGI-KDLPEVLLGKPVDPHPGVEPSPAAKACEPGAAIDNFTN 688
            ++PRP+KVQEL VYEINE DR SP  L+ +   +  LGDLVPF+NKLYTGDL+KRVGITAG+C++IE+ PEKKG+R+EATYSFYFGDYGH++VQGPYLTYED++LA+TGG+GIFEG YGQVKLQQLV+P KLFYTFYLKG+  DLP  L G PV P   +EP+P AKA EP   I N+TN
Sbjct:   74 ENPRPSKVQELSVYEINELDRHSPKILKNAFSLMFGLGDLVPFTNKLYTGDLKKRVGITAGLCVVIEHVPEKKGERFEATYSFYFGDYGHLSVQGPYLTYEDSFLAITGGAGIFEGAYGQVKLQQLVYPTKLFYTFYLKGLANDLPLELTGTPVPPSKDIEPAPEAKALEPSGVISNYTN 253          
BLAST of CN189485 vs. ExPASy Swiss-Prot
Match: AOC3_ARATH (Allene oxide cyclase 3, chloroplastic OS=Arabidopsis thaliana GN=AOC3 PE=2 SV=1)

HSP 1 Score: 261.922 bits (668), Expect = 2.337e-69
Identity = 126/182 (69.23%), Postives = 151/182 (82.97%), Query Frame = -1
Query:  152 SDDPRPTKVQELHVYEINERDRGSPAYLRLSQKPVN-SLGDLVPFSNKLYTGDLQKRVGITAGICILIENKPEKKGDRYEATYSFYFGDYGHIAVQGPYLTYEDTYLAVTGGSGIFEGVYGQVKLQQLVFPFKLFYTFYLKGI-KDLPEVLLGKPVDPHPGVEPSPAAKACEPGAAIDNFTN 691
            +++ RP+K+QEL+VYE+NE DR SPA L+L +KP    LGDLVPF+NKLYTGDL+KRVGITAG+C+LI++ PEK GDR+EA+YSFYFGDYGH++VQG YLTYEDT+LAVTGGSGIFEG YGQVKL+QLV+P KLFYTFYLKG+  DLP  L G  V P   V+P+P AKA EP   I NFTN
Sbjct:   77 TENSRPSKIQELNVYELNEGDRNSPAVLKLGKKPTELCLGDLVPFTNKLYTGDLKKRVGITAGLCVLIQHVPEKSGDRFEASYSFYFGDYGHLSVQGQYLTYEDTFLAVTGGSGIFEGAYGQVKLRQLVYPTKLFYTFYLKGLANDLPLELTGTAVTPSKDVKPAPEAKAMEPSGVISNFTN 258          
BLAST of CN189485 vs. ExPASy Swiss-Prot
Match: AOC1_ARATH (Allene oxide cyclase 1, chloroplastic OS=Arabidopsis thaliana GN=AOC1 PE=1 SV=1)

HSP 1 Score: 261.536 bits (667), Expect = 3.052e-69
Identity = 124/182 (68.13%), Postives = 151/182 (82.97%), Query Frame = -1
Query:  152 SSDDPRPTKVQELHVYEINERDRGSPAYLRLSQKPVNSLGDLVPFSNKLYTGDLQKRVGITAGICILIENKPEKKGDRYEATYSFYFGDYGHIAVQGPYLTYEDTYLAVTGGSGIFEGVYGQVKLQQLVFPFKLFYTFYLKGI-KDLPEVLLGKPVDPHPGVEPSPAAKACEPGAAIDNFTN 694
            ++++PRP+KVQEL VYEIN+ DR SP  L+ +      LGDLVPF+NKLYTGDL+KRVGITAG+C++IE+ PEK GDR+EATYSFYFGDYGH++VQGPYLTYED++LA+TGG+GIFEG YGQVKLQQLV+P KLFYTFYLKG+  DLP  L+G PV P   VEP+P AKA +P   + NFTN
Sbjct:   73 NTENPRPSKVQELSVYEINDLDRHSPKILKNAFSFRFGLGDLVPFTNKLYTGDLKKRVGITAGLCVVIEHVPEKNGDRFEATYSFYFGDYGHLSVQGPYLTYEDSFLAITGGAGIFEGAYGQVKLQQLVYPTKLFYTFYLKGLANDLPLELIGTPVPPSKDVEPAPEAKALKPSGVVSNFTN 254          
The following BLAST results are available for this feature:
BLAST of CN189485 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
AOC4_ARATH3.260e-7169.73Allene oxide cyclase 4, chloroplastic OS=Arabidops... [more]
AOC2_ARATH8.031e-7069.44Allene oxide cyclase 2, chloroplastic OS=Arabidops... [more]
AOC3_ARATH2.337e-6969.23Allene oxide cyclase 3, chloroplastic OS=Arabidops... [more]
AOC1_ARATH3.052e-6968.13Allene oxide cyclase 1, chloroplastic OS=Arabidops... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS06_0001P02_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001P02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189485 ID=CN189485; Name=CN189485; organism=Citrus sinensis; type=EST; length=700bp
TTTTTTTTTTTTTAAAAAAACAACAACCTCCCACCTTGTTATTTGGCCAT
CACCATCTTCATCATCATATCACTAGAGCCAATATGTTTGCACACATTAT
TCACTTGAATAAAAAACAACCCAATTAAAGATGTCCTCATATCCCTAACT
AATTAGTGAAATTGTCAATGGCTGCACCAGGCTCACAAGCCTTAGCAGCA
GGGGAGGGCTCAACACCAGGGTGCGGATCCACCGGCTTCCCCAGAAGCAC
TTCTGGCAAGTCCTTAATGCCCTTCAAATAAAATGTGTAAAACAGCTTAA
AAGGAAACACAAGTTGCTGCAGCTTAACCTGCCCATACACTCCCTCGAAG
ATGCCGGATCCACCAGTCACAGCCAGATAAGTGTCCTCATAGGTCAAATA
CGGTCCTTGCACAGCTATGTGACCATAGTCTCCAAAGTAGAAGCTGTAAG
TTGCTTCATATCGGTCACCTTTCTTTTCTGGTTTGTTTTCGATCAAAATG
CATATACCCGCTGTTATTCCCACCCTCTTTTGCAGGTCTCCAGTATATAA
TTTGTTGCTAAAAGGGACAAGATCACCAAGTGAATTCACAGGTTTCTGGC
TCAAGCGAAGATAAGCTGGACTGCCACGATCTCGCTCGTTGATCTCATAC
ACATGAAGTTCTTGAACCTTGGTGGGTCTGGGATCATCTGATGAGTTAGC
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