CN189483

Overview
NameCN189483
Unique NameCN189483
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length480
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2735 contig Csv1_Contig2735:1..480. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN189483 vs. ExPASy Swiss-Prot
Match: ILVB3_BRANA (Acetolactate synthase 3, chloroplastic OS=Brassica napus PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 4.103e-34
Identity = 78/118 (66.10%), Postives = 86/118 (72.88%), Query Frame = 1
Query:  127 PISKFTLPFSHKFGKPSLRIITXXXXXXXXXXXXTIAQTVITSPETNFSSRFAPDEPRKGADILVEALERQGVTDVFAYPGGASMEIHQALTRSNIIRNVLPRHEQGGIFAAEGYARS 480
            PIS+F+LPFS    KPS R+               +A       +T F SR+APDEPRKGADILVEALERQGV  VFAYPGGASMEIHQALTRS+ IRNVLPRHEQGG+FAAEGYARS
Sbjct:   23 PISRFSLPFSLTPQKPSSRLHRPLAISAVLNSPVNVAPEKTDKIKT-FISRYAPDEPRKGADILVEALERQGVETVFAYPGGASMEIHQALTRSSTIRNVLPRHEQGGVFAAEGYARS 139          
BLAST of CN189483 vs. ExPASy Swiss-Prot
Match: ILVB_ARATH (Acetolactate synthase, chloroplastic OS=Arabidopsis thaliana GN=CSR 1.2 PE=1 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 9.140e-34
Identity = 88/159 (55.35%), Postives = 95/159 (59.75%), Query Frame = 1
Query:   37 MAAASTHTAXXXXXXXXXXXXXXXQKSALFPISKFTLPFSHKFGKPSLRIITXXXXXXXXXXXXTIAQTVI-----------TSPETNFSSRFAPDEPRKGADILVEALERQGVTDVFAYPGGASMEIHQALTRSNIIRNVLPRHEQGGIFAAEGYARS 480
            MAAA+T T                 KS L PIS+F+LPFS    K S                  +  T             T PET F SRFAPD+PRKGADILVEALERQGV  VFAYPGGASMEIHQALTRS+ IRNVLPRHEQGG+FAAEGYARS
Sbjct:    1 MAAATTTTTTSSSISFSTKPSPSSSKSPL-PISRFSLPFSLNPNKSSSSSRRRGIKSSSPSSISAVLNTTTNVTTTPSPTKPTKPET-FISRFAPDQPRKGADILVEALERQGVETVFAYPGGASMEIHQALTRSSSIRNVLPRHEQGGVFAAEGYARS 157          
BLAST of CN189483 vs. ExPASy Swiss-Prot
Match: ILVB1_TOBAC (Acetolactate synthase 1, chloroplastic OS=Nicotiana tabacum GN=ALS SURA PE=1 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 9.140e-34
Identity = 77/130 (59.23%), Postives = 89/130 (68.46%), Query Frame = 1
Query:  115 SALFPISKFTLPFS-HKFGKPSLRIITXXXXXXXXXXXXTIAQTVITSPETN-------FSSRFAPDEPRKGADILVEALERQGVTDVFAYPGGASMEIHQALTRSNIIRNVLPRHEQGGIFAAEGYARS 480
            S L P S F  P   HK   P L +              TI+  + T+ + +       F SRFAPDEPRKG+D+LVEALER+GVTDVFAYPGGASMEIHQALTRS+IIRNVLPRHEQGG+FAAEGYAR+
Sbjct:   25 STLLPRSTFPFPHHPHKTTPPPLHLTHTHIHIHSQRRRFTISNVISTNQKVSQTEKTETFVSRFAPDEPRKGSDVLVEALEREGVTDVFAYPGGASMEIHQALTRSSIIRNVLPRHEQGGVFAAEGYARA 154          
BLAST of CN189483 vs. ExPASy Swiss-Prot
Match: ILVB1_BRANA (Acetolactate synthase 1, chloroplastic OS=Brassica napus PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 3.473e-33
Identity = 77/120 (64.17%), Postives = 85/120 (70.83%), Query Frame = 1
Query:  127 PISKFTLPFSHKFGKPSLRIITXXXXXXXXXXXXTIAQTVITSPETN--FSSRFAPDEPRKGADILVEALERQGVTDVFAYPGGASMEIHQALTRSNIIRNVLPRHEQGGIFAAEGYARS 480
            PIS+F+LPFS    K S R+               +A       + N  F SR+APDEPRKGADILVEALERQGV  VFAYPGGASMEIHQALTRS+ IRNVLPRHEQGG+FAAEGYARS
Sbjct:   23 PISRFSLPFSLTPQKDSSRLHRPLAISAVLNSPVNVAPPSPEKTDKNKTFVSRYAPDEPRKGADILVEALERQGVETVFAYPGGASMEIHQALTRSSTIRNVLPRHEQGGVFAAEGYARS 142          
BLAST of CN189483 vs. ExPASy Swiss-Prot
Match: ILVB2_TOBAC (Acetolactate synthase 2, chloroplastic OS=Nicotiana tabacum GN=ALS SURB PE=1 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 1.011e-32
Identity = 77/132 (58.33%), Postives = 90/132 (68.18%), Query Frame = 1
Query:  109 QKSALFPISKFTLPFS-HKFGKPSLRIITXXXXXXXXXXXXTIAQTVITSPETN-------FSSRFAPDEPRKGADILVEALERQGVTDVFAYPGGASMEIHQALTRSNIIRNVLPRHEQGGIFAAEGYARS 480
            + S L P S F  P   HK   P L +              TI+  + T+ + +       F SRFAPDEPRKG+D+LVEALER+GVTDVFAYPGGASMEIHQALTRS+IIRNVLPRHEQGG+FAAEGYAR+
Sbjct:   22 KSSTLLPRSTFPFPHHPHKTTPPPLHLTPTHIHSQRRRF--TISNVISTTQKVSETQKAETFVSRFAPDEPRKGSDVLVEALEREGVTDVFAYPGGASMEIHQALTRSSIIRNVLPRHEQGGVFAAEGYARA 151          
BLAST of CN189483 vs. ExPASy Swiss-Prot
Match: ILVB2_BRANA (Acetolactate synthase 2, chloroplastic OS=Brassica napus PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 2.330e-29
Identity = 63/73 (86.30%), Postives = 67/73 (91.78%), Query Frame = 1
Query:  262 TNFSSRFAPDEPRKGADILVEALERQGVTDVFAYPGGASMEIHQALTRSNIIRNVLPRHEQGGIFAAEGYARS 480
            + FSS++AP+ PR GADILVEALERQGV  VFAYPGGASMEIHQALTRSN IRNVLPRHEQGGIFAAEGYARS
Sbjct:   61 STFSSKYAPNVPRSGADILVEALERQGVDVVFAYPGGASMEIHQALTRSNTIRNVLPRHEQGGIFAAEGYARS 133          
BLAST of CN189483 vs. ExPASy Swiss-Prot
Match: ILVB1_ORYSJ (Acetolactate synthase 1, chloroplastic OS=Oryza sativa subsp. japonica GN=ALS1 PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 2.112e-22
Identity = 53/67 (79.10%), Postives = 57/67 (85.07%), Query Frame = 1
Query:  280 FAPDEPRKGADILVEALERQGVTDVFAYPGGASMEIHQALTRSNIIRNVLPRHEQGGIFAAEGYARS 480
            + P EPRKGADILVEALER GV+DVFAYPGGASMEIHQALTRS +I N L RHEQG  FAA GYAR+
Sbjct:   65 WGPAEPRKGADILVEALERCGVSDVFAYPGGASMEIHQALTRSPVITNHLFRHEQGEAFAASGYARA 131          
BLAST of CN189483 vs. ExPASy Swiss-Prot
Match: ILVB2_MAIZE (Acetolactate synthase 2, chloroplastic OS=Zea mays GN=ALS2 PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 2.758e-22
Identity = 54/83 (65.06%), Postives = 62/83 (74.70%), Query Frame = 1
Query:  232 IAQTVITSPETNFSSRFAPDEPRKGADILVEALERQGVTDVFAYPGGASMEIHQALTRSNIIRNVLPRHEQGGIFAAEGYARS 480
            +++   T+P       + P+EPRKG+DILVEALER GV DVFAYPGGASMEIHQALTRS +I N L RHEQG  FAA  YARS
Sbjct:   43 LSRATPTAPPATPLRPWGPNEPRKGSDILVEALERCGVRDVFAYPGGASMEIHQALTRSPVIANHLFRHEQGEAFAASAYARS 125          
BLAST of CN189483 vs. ExPASy Swiss-Prot
Match: ILVB1_MAIZE (Acetolactate synthase 1, chloroplastic OS=Zea mays GN=ALS1 PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 6.145e-22
Identity = 52/67 (77.61%), Postives = 56/67 (83.58%), Query Frame = 1
Query:  280 FAPDEPRKGADILVEALERQGVTDVFAYPGGASMEIHQALTRSNIIRNVLPRHEQGGIFAAEGYARS 480
            + P +PRKGADILVE+LER GV DVFAYPGGASMEIHQALTRS +I N L RHEQG  FAA GYARS
Sbjct:   59 WGPTDPRKGADILVESLERCGVRDVFAYPGGASMEIHQALTRSPVIANHLFRHEQGEAFAASGYARS 125          
BLAST of CN189483 vs. ExPASy Swiss-Prot
Match: ILVB2_ORYSJ (Probable acetolactate synthase 2, chloroplastic OS=Oryza sativa subsp. japonica GN=ALS2 PE=2 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 6.794e-21
Identity = 52/66 (78.79%), Postives = 54/66 (81.82%), Query Frame = 1
Query:  283 APDEPRKGADILVEALERQGVTDVFAYPGGASMEIHQALTRSNIIRNVLPRHEQGGIFAAEGYARS 480
            AP   RKGADI+VEALER GV DVF YPGGASMEIHQALTRS +IRN L RHEQG  FAA GYARS
Sbjct:   80 APMGQRKGADIVVEALERCGVRDVFEYPGGASMEIHQALTRSPVIRNHLLRHEQGEAFAASGYARS 145          
The following BLAST results are available for this feature:
BLAST of CN189483 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
ILVB3_BRANA4.103e-3466.10Acetolactate synthase 3, chloroplastic OS=Brassica... [more]
ILVB_ARATH9.140e-3455.35Acetolactate synthase, chloroplastic OS=Arabidopsi... [more]
ILVB1_TOBAC9.140e-3459.23Acetolactate synthase 1, chloroplastic OS=Nicotian... [more]
ILVB1_BRANA3.473e-3364.17Acetolactate synthase 1, chloroplastic OS=Brassica... [more]
ILVB2_TOBAC1.011e-3258.33Acetolactate synthase 2, chloroplastic OS=Nicotian... [more]
ILVB2_BRANA2.330e-2986.30Acetolactate synthase 2, chloroplastic OS=Brassica... [more]
ILVB1_ORYSJ2.112e-2279.10Acetolactate synthase 1, chloroplastic OS=Oryza sa... [more]
ILVB2_MAIZE2.758e-2265.06Acetolactate synthase 2, chloroplastic OS=Zea mays... [more]
ILVB1_MAIZE6.145e-2277.61Acetolactate synthase 1, chloroplastic OS=Zea mays... [more]
ILVB2_ORYSJ6.794e-2178.79Probable acetolactate synthase 2, chloroplastic OS... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS06_0001O24_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001O24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189483 ID=CN189483; Name=CN189483; organism=Citrus sinensis; type=EST; length=480bp
GAGGCATCCCAGCAGCTGCCTCTCTCATACACAATAATGGCGGCCGCTTC
GACGCACACCGCCACCTTCACAAATCCCCCCTCATCCTCCTTCATCTCCA
CCACCAGTCAAAAATCAGCATTATTTCCAATTTCCAAATTCACCCTTCCT
TTTTCTCATAAGTTCGGAAAACCCAGTCTCCGCATCATAACAAGCTCCCT
CCCCAAACCCTCCGCCGCCTCCTCCTCCACTATCGCCCAAACTGTAATAA
CATCTCCAGAAACAAACTTTTCTTCTCGATTTGCCCCTGACGAGCCGCGC
AAAGGCGCCGACATCCTCGTCGAAGCCCTCGAGCGCCAGGGCGTCACCGA
CGTCTTCGCCTACCCGGGCGGCGCGTCGATGGAGATTCACCAGGCCCTCA
CGCGCTCCAACATCATCCGCAACGTCCTCCCCCGCCACGAACAAGGCGGC
ATCTTCGCCGCCGAGGGATACGCTCGCTCC
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