CN189482

Overview
NameCN189482
Unique NameCN189482
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length701
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN189482_ssr505 microsatellite CN189482_ssr505:505..516. BLAST: Citrus ESTs to Populus V2 proteins
CN189482_ssr680 microsatellite CN189482_ssr680:680..694. BLAST: Citrus ESTs to Populus V2 proteins
CN189482_ssr168 microsatellite CN189482_ssr168:168..187. BLAST: Citrus ESTs to Populus V2 proteins
Homology
BLAST of CN189482 vs. ExPASy Swiss-Prot
Match: WOX13_ARATH (WUSCHEL-related homeobox 13 OS=Arabidopsis thaliana GN=WOX13 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.639e-12
Identity = 44/105 (41.90%), Postives = 58/105 (55.24%), Query Frame = -1
Query:  342 DSEVETEVDSLLLHDEHKTTKPENLSCAHSTSQPQHLCNLXXXXXXXXXXXPMCFHTPADISSSQLHFLGVFSNNPRDDHLTGKMGGMPGSYNLYDHAEDYSMAG 656
            +SEVETEV++L   +E +  +PE+L      +   +                +CF +P    SS LH L V SN PRD+HL GKMG +  SYNLYDH EDY M+G
Sbjct:  171 ESEVETEVEAL---NEKRVVRPESLLGLPDGNSNNNGLGTTTATTTAPRPEDLCFQSPE--ISSDLHLLDVLSN-PRDEHLVGKMG-LAESYNLYDHVEDYGMSG 268          
The following BLAST results are available for this feature:
BLAST of CN189482 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
WOX13_ARATH7.639e-1241.90WUSCHEL-related homeobox 13 OS=Arabidopsis thalian... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS06_0001O24_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001O24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189482 ID=CN189482; Name=CN189482; organism=Citrus sinensis; type=EST; length=701bp
TTTTTTTTTTTTTTTGAATTAAAATATTTTCATTTCCCTTGGTAAAAGCC
AAAAATGGGTCACCCCACCATCATCGTTACATAACATTGCACCAAGACCA
TCCCAAAGGCAAATCTGGAGATTCACTCTAATGCATTATGTAAAACACAA
AAGCCAATTCAAATGATCAAGCCAAGCCAAGCCAAGCCCTACTGGAAAAG
GGTCCATTCTTTAGCTTAGAAACCAACCAGCTCATTAGGTTTTGGTGTAA
TCAAACAAGAAGATGAAGCTCAAGCATCACGGCATGATAGTTGGATAGAC
AAGGCTTTGTCGGAGAGATTAATGGAACAGAATGAGTGTCAACCAGCCAT
GCTGTAGTCTTCTGCATGATCATAAAGATTATAGCTCCCTGGCATTCCAC
CCATCTTTCCTGTTAAATGATCATCTCTCGGATTATTAGAAAACACACCC
AAGAAATGCAATTGAGAGGAAGAAATGTCGGCAGGGGTGTGAAAGCACAT
AGGGTCATCATCATCACGAGGCCTTGGAGTCGGAGGGAGGTTGCATAAGT
GTTGAGGTTGAGAGGTAGAATGAGCACAAGAAAGATTCTCTGGTTTAGTG
GTCTTGTGTTCGTCATGCAGCAGCAGAGAATCAACCTCAGTCTCTACTTC
TGAATCAGCACCACCAGCACCAGCACCAGCACCACCACCACCACCATTAT
G
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