CN189478

Overview
NameCN189478
Unique NameCN189478
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length403
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2734 contig Csv1_Contig2734:198..600. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN189478 vs. ExPASy Swiss-Prot
Match: AHM7_ARATH (Putative copper-transporting ATPase 3 OS=Arabidopsis thaliana GN=HMA5 PE=2 SV=2)

HSP 1 Score: 190.274 bits (482), Expect = 2.668e-48
Identity = 98/117 (83.76%), Postives = 102/117 (87.18%), Query Frame = 2
Query:    2 LVAADVGMAIGAGTDIAIEAADIVLMKSNLEDVITAIDLSRKTFSRIRLNYIWALGYNLLGIPIAAGALFPTTGFRLPPWIAGAAMAAXXXXXXXXXXXXKNYKRPKKLNNLEIREI 352
            LVAADVGMAIGAGTDIAIEAADIVLMKSNLEDVITAIDLSRKTFSRIRLNY+WALGYNL+GIPIAAG LFP T FRLPPWIAGAAMAA            KNYKRPKKL++LEIREI
Sbjct:  874 LVAADVGMAIGAGTDIAIEAADIVLMKSNLEDVITAIDLSRKTFSRIRLNYVWALGYNLMGIPIAAGVLFPGTRFRLPPWIAGAAMAASSVSVVCCSLLLKNYKRPKKLDHLEIREI 990          
BLAST of CN189478 vs. ExPASy Swiss-Prot
Match: AHM5_ARATH (Copper-transporting ATPase RAN1 OS=Arabidopsis thaliana GN=RAN1 PE=1 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 1.571e-32
Identity = 69/114 (60.53%), Postives = 83/114 (72.81%), Query Frame = 2
Query:    2 LVAADVGMAIGAGTDIAIEAADIVLMKSNLEDVITAIDLSRKTFSRIRLNYIWALGYNLLGIPIAAGALFPTTGFRLPPWIAGAAMAAXXXXXXXXXXXXKNYKRPKKLNNLEI 343
            L AADVGMAIGAGTD+AIEAAD VLM++NLEDVITAIDLSRKT +RIRLNY++A+ YN++ IPIAAG  FP    +LPPW AGA MA             + YK+P+    L+I
Sbjct:  885 LAAADVGMAIGAGTDVAIEAADYVLMRNNLEDVITAIDLSRKTLTRIRLNYVFAMAYNVVSIPIAAGVFFPVLRVQLPPWAAGACMALSSVSVVCSSLLLRRYKKPRLTTVLKI 998          
BLAST of CN189478 vs. ExPASy Swiss-Prot
Match: ATP7A_RAT (Copper-transporting ATPase 1 OS=Rattus norvegicus GN=Atp7a PE=1 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 5.413e-25
Identity = 60/115 (52.17%), Postives = 79/115 (68.70%), Query Frame = 2
Query:    2 LVAADVGMAIGAGTDIAIEAADIVLMKSNLEDVITAIDLSRKTFSRIRLNYIWALGYNLLGIPIAAGALFPTTGFRLPPWIAGAAMAAXXXXXXXXXXXXKNYKRPKKLNNLEIR 346
            L  A VG+AIG GTD+AIEAAD+VL++++L DV+ +IDLSRKT  RIR+N+++AL YNL+GIPIAAG   P  G  L PW+  AAMAA            K Y++P   +N E+R
Sbjct: 1301 LAMASVGIAIGTGTDVAIEAADVVLIRNDLLDVVASIDLSRKTVKRIRINFVFALIYNLIGIPIAAGVFLP-IGLVLQPWMGSAAMAASSVSVVLSSLFLKLYRKP-TYDNYELR 1413          
BLAST of CN189478 vs. ExPASy Swiss-Prot
Match: ATP7A_MOUSE (Copper-transporting ATPase 1 OS=Mus musculus GN=Atp7a PE=1 SV=2)

HSP 1 Score: 111.309 bits (277), Expect = 1.575e-24
Identity = 57/106 (53.77%), Postives = 75/106 (70.75%), Query Frame = 2
Query:    2 LVAADVGMAIGAGTDIAIEAADIVLMKSNLEDVITAIDLSRKTFSRIRLNYIWALGYNLLGIPIAAGALFPTTGFRLPPWIAGAAMAAXXXXXXXXXXXXKNYKRP 319
            L  A+VG+AIG GTD+AIEAAD+VL++++L DV+ +IDLSRKT  RIR+N+++AL YNL+GIPIAAG   P  G  L PW+  AAMAA            K Y++P
Sbjct: 1300 LAMANVGIAIGTGTDVAIEAADVVLIRNDLLDVVASIDLSRKTVKRIRINFVFALIYNLVGIPIAAGVFLP-IGLVLQPWMGSAAMAASSVSVVLSSLFLKLYRKP 1404          
BLAST of CN189478 vs. ExPASy Swiss-Prot
Match: ATP7A_HUMAN (Copper-transporting ATPase 1 OS=Homo sapiens GN=ATP7A PE=1 SV=3)

HSP 1 Score: 109.768 bits (273), Expect = 4.582e-24
Identity = 56/106 (52.83%), Postives = 75/106 (70.75%), Query Frame = 2
Query:    2 LVAADVGMAIGAGTDIAIEAADIVLMKSNLEDVITAIDLSRKTFSRIRLNYIWALGYNLLGIPIAAGALFPTTGFRLPPWIAGAAMAAXXXXXXXXXXXXKNYKRP 319
            L  A+VG+AIG GTD+AIEAAD+VL++++L DV+ +IDLSR+T  RIR+N+++AL YNL+GIPIAAG   P  G  L PW+  AAMAA            K Y++P
Sbjct: 1309 LAMANVGIAIGTGTDVAIEAADVVLIRNDLLDVVASIDLSRETVKRIRINFVFALIYNLVGIPIAAGVFMP-IGLVLQPWMGSAAMAASSVSVVLSSLFLKLYRKP 1413          
BLAST of CN189478 vs. ExPASy Swiss-Prot
Match: ATP7B_SHEEP (Copper-transporting ATPase 2 OS=Ovis aries GN=ATP7B PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 6.616e-23
Identity = 56/106 (52.83%), Postives = 72/106 (67.92%), Query Frame = 2
Query:    2 LVAADVGMAIGAGTDIAIEAADIVLMKSNLEDVITAIDLSRKTFSRIRLNYIWALGYNLLGIPIAAGALFPTTGFRLPPWIAGAAMAAXXXXXXXXXXXXKNYKRP 319
            L  ADVG+AIG GTD+AIEAAD+VL++++L DV+ +I LSR+T  RIRLN + AL YNL+GIP+AAG   P  G  L PW+  AAMAA            K Y++P
Sbjct: 1315 LAQADVGIAIGTGTDVAIEAADVVLIRNDLLDVVASIHLSRRTVWRIRLNLVLALIYNLIGIPVAAGVFIP-IGVVLQPWMGSAAMAASSVSVVLSSLQLKCYRKP 1419          
BLAST of CN189478 vs. ExPASy Swiss-Prot
Match: ATP7A_CRIGR (Copper-transporting ATPase 1 (Fragment) OS=Cricetulus griseus GN=ATP7A PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 6.616e-23
Identity = 56/115 (48.70%), Postives = 76/115 (66.09%), Query Frame = 2
Query:    2 LVAADVGMAIGAGTDIAIEAADIVLMKSNLEDVITAIDLSRKTFSRIRLNYIWALGYNLLGIPIAAGALFPTTGFRLPPWIAGAAMAAXXXXXXXXXXXXKNYKRPKKLNNLEIR 346
            L  A+VG+AIG GTD+ IEAAD+V ++++L DV+ +IDLSRKT  RIR+N+++ L YNL+GIPIAAG   P  G    PW+  AAMAA            K Y++P   +N E+R
Sbjct: 1299 LAMANVGIAIGTGTDVTIEAADVVFIRNDLLDVVASIDLSRKTVKRIRINFLFPLIYNLVGIPIAAGVFLP-IGLVFQPWMGSAAMAASSVSVVLSSLFLKLYRKP-TYDNYELR 1411          
BLAST of CN189478 vs. ExPASy Swiss-Prot
Match: ATP7B_HUMAN (Copper-transporting ATPase 2 OS=Homo sapiens GN=ATP7B PE=1 SV=4)

HSP 1 Score: 105.145 bits (261), Expect = 1.129e-22
Identity = 55/106 (51.89%), Postives = 72/106 (67.92%), Query Frame = 2
Query:    2 LVAADVGMAIGAGTDIAIEAADIVLMKSNLEDVITAIDLSRKTFSRIRLNYIWALGYNLLGIPIAAGALFPTTGFRLPPWIAGAAMAAXXXXXXXXXXXXKNYKRP 319
            L  AD+G+AIG GTD+AIEAAD+VL++++L DV+ +I LS++T  RIR+N + AL YNL+GIPIAAG   P  G  L PW+  AAMAA            K YK+P
Sbjct: 1275 LAQADMGVAIGTGTDVAIEAADVVLIRNDLLDVVASIHLSKRTVRRIRINLVLALIYNLVGIPIAAGVFMP-IGIVLQPWMGSAAMAASSVSVVLSSLQLKCYKKP 1379          
BLAST of CN189478 vs. ExPASy Swiss-Prot
Match: ATP7B_MOUSE (Copper-transporting ATPase 2 OS=Mus musculus GN=Atp7b PE=1 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 2.514e-22
Identity = 54/106 (50.94%), Postives = 72/106 (67.92%), Query Frame = 2
Query:    2 LVAADVGMAIGAGTDIAIEAADIVLMKSNLEDVITAIDLSRKTFSRIRLNYIWALGYNLLGIPIAAGALFPTTGFRLPPWIAGAAMAAXXXXXXXXXXXXKNYKRP 319
            L  ADVG+AIG GTD+AIEAAD+VL++++L DV+ +I LS++T  RIR+N + AL YN++GIPIAAG   P  G  L PW+  AAMAA            K Y++P
Sbjct: 1272 LAQADVGIAIGTGTDVAIEAADVVLIRNDLLDVVASIHLSKRTVRRIRVNLVLALIYNMVGIPIAAGVFMP-IGIVLQPWMGSAAMAASSVSVVLSSLQLKCYRKP 1376          
BLAST of CN189478 vs. ExPASy Swiss-Prot
Match: COPA_ARCFU (Probable copper-exporting P-type ATPase A OS=Archaeoglobus fulgidus GN=copA PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 6.193e-21
Identity = 52/127 (40.94%), Postives = 75/127 (59.06%), Query Frame = 2
Query:    2 LVAADVGMAIGAGTDIAIEAADIVLMKSNLEDVITAIDLSRKTFSRIRLNYIWALGYNLLGIPIAAGALFPTTGFRLPPWIAGAAMAAXXXXXXXXXXXXKNYKRPKKLNNLEIREICWKNSKSICY 382
            L  AD+G+A+G+G+D+A+E+ DIVL++ +L DV+ AI LSRKT S+I+ N  WAL YN++ IP AAG L+P  G    P  AG AMA             +NY  P +     + +I  + S   C+
Sbjct:  626 LAQADLGIAVGSGSDVAVESGDIVLIRDDLRDVVAAIQLSRKTMSKIKQNIFWALIYNVILIPAAAGLLYPIFGVVFRPEFAGLAMAMSSVSVVANSLLLRNYVPPIRRGGDSVEKIVLELSGLSCH 752          
The following BLAST results are available for this feature:
BLAST of CN189478 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70
Match NameE-valueIdentityDescription
AHM7_ARATH2.668e-4883.76Putative copper-transporting ATPase 3 OS=Arabidops... [more]
AHM5_ARATH1.571e-3260.53Copper-transporting ATPase RAN1 OS=Arabidopsis tha... [more]
ATP7A_RAT5.413e-2552.17Copper-transporting ATPase 1 OS=Rattus norvegicus ... [more]
ATP7A_MOUSE1.575e-2453.77Copper-transporting ATPase 1 OS=Mus musculus GN=At... [more]
ATP7A_HUMAN4.582e-2452.83Copper-transporting ATPase 1 OS=Homo sapiens GN=AT... [more]
ATP7B_SHEEP6.616e-2352.83Copper-transporting ATPase 2 OS=Ovis aries GN=ATP7... [more]
ATP7A_CRIGR6.616e-2348.70Copper-transporting ATPase 1 (Fragment) OS=Cricetu... [more]
ATP7B_HUMAN1.129e-2251.89Copper-transporting ATPase 2 OS=Homo sapiens GN=AT... [more]
ATP7B_MOUSE2.514e-2250.94Copper-transporting ATPase 2 OS=Mus musculus GN=At... [more]
COPA_ARCFU6.193e-2140.94Probable copper-exporting P-type ATPase A OS=Archa... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001O21_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001O21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189478 ID=CN189478; Name=CN189478; organism=Citrus sinensis; type=EST; length=403bp
ACTTGTAGCAGCAGATGTTGGAATGGCAATTGGTGCAGGCACGGACATTG
CAATAGAGGCAGCTGATATTGTCCTGATGAAGAGTAATTTGGAGGATGTG
ATAACTGCTATAGACTTGTCGAGGAAAACTTTTTCGCGTATTCGTCTGAA
CTACATTTGGGCTCTGGGTTATAACCTTTTAGGCATACCAATTGCTGCGG
GAGCCCTTTTCCCGACTACTGGATTCCGTTTACCTCCATGGATTGCTGGA
GCTGCAATGGCAGCCTCTTCAGTTAGTGTTGTTTGCTGCTCTCTGTTGCT
GAAGAATTACAAGAGGCCTAAGAAGCTGAATAATCTTGAGATTCGTGAAA
TTTGTTGGAAAAATAGCAAATCAATATGTTATTTTGAGGGCACATTTTGA
GTG
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