CN189466

Overview
NameCN189466
Unique NameCN189466
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length692
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN189466_ssr33 microsatellite CN189466_ssr33:33..47. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig7034 contig Csv1_Contig7034:106..797. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN189466 vs. ExPASy Swiss-Prot
Match: CYSP_PEA (Cysteine proteinase 15A OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 327.02 bits (837), Expect = 5.766e-89
Identity = 155/202 (76.73%), Postives = 179/202 (88.61%), Query Frame = 3
Query:   81 NDDDAMIRQVVPSDGEQSEDHLLNAEHHFSLFKSKFSKTYATQEEHDYRFRVFKANLRRAKRRQLLDPTAVHGVTKFSDLTPSEFRRQFLGLNRRLRLPADAQKAPILPTNDLPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEYILKAGGV 686
            N+DD +IRQVV ++    EDHLLNAEHHF+ FKSKFSK+YAT+EEHDYRF VFK+NL +AK  Q  DPTA HG+TKFSDLT SEFRRQFLGL +RLRLPA AQKAPILPT +LP DFDWR+ GAVT VKDQG+CGSCW+FS TGALEGAH+L+TG+LVSLSEQQLVDCDH CDPE++GSCDSGCNGGLMN+AFEY+L++GGV
Sbjct:   24 NNDDFIIRQVVDNE----EDHLLNAEHHFTSFKSKFSKSYATKEEHDYRFGVFKSNLIKAKLHQNRDPTAEHGITKFSDLTASEFRRQFLGLKKRLRLPAHAQKAPILPTTNLPEDFDWREKGAVTPVKDQGSCGSCWAFSTTGALEGAHYLATGKLVSLSEQQLVDCDHVCDPEQAGSCDSGCNGGLMNNAFEYLLESGGV 221          
BLAST of CN189466 vs. ExPASy Swiss-Prot
Match: RD19A_ARATH (Cysteine proteinase RD19a OS=Arabidopsis thaliana GN=RD19A PE=2 SV=1)

HSP 1 Score: 306.22 bits (783), Expect = 1.053e-82
Identity = 147/200 (73.50%), Postives = 167/200 (83.50%), Query Frame = 3
Query:   87 DDAMIRQVVPSDGEQSEDHLLNAEHHFSLFKSKFSKTYATQEEHDYRFRVFKANLRRAKRRQLLDPTAVHGVTKFSDLTPSEFRRQFLGLNRRLRLPADAQKAPILPTNDLPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEYILKAGGV 686
            DD +IRQVV      +E  +L +E HFSLFK KF K YA+ EEHDYRF VFKANLRRA+R Q LDP+A HGVT+FSDLT SEFR++ LG+    +LP DA KAPILPT +LP DFDWRDHGAVT VK+QG+CGSCWSFSATGALEGA+FL+TG+LVSLSEQQLVDCDHECDPEE+ SCDSGCNGGLMNSAFEY LK GG+
Sbjct:   29 DDLVIRQVVGG----AEPQVLTSEDHFSLFKRKFGKVYASNEEHDYRFSVFKANLRRARRHQKLDPSATHGVTQFSDLTRSEFRKKHLGVRSGFKLPKDANKAPILPTENLPEDFDWRDHGAVTPVKNQGSCGSCWSFSATGALEGANFLATGKLVSLSEQQLVDCDHECDPEEADSCDSGCNGGLMNSAFEYTLKTGGL 224          
BLAST of CN189466 vs. ExPASy Swiss-Prot
Match: A494_ARATH (Probable cysteine proteinase A494 OS=Arabidopsis thaliana GN=At2g21430 PE=2 SV=2)

HSP 1 Score: 296.59 bits (758), Expect = 8.346e-80
Identity = 142/203 (69.95%), Postives = 166/203 (81.77%), Query Frame = 3
Query:   84 DDDAMIRQVVPSDGEQSEDHLLNAEHHFSLFKSKFSKTYATQEEHDYRFRVFKANLRRAKRRQLLDPTAVHGVTKFSDLTPSEFRRQFLGLNRRLRLPADAQKAPILPTNDLPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEYILKAGGVER 692
            D+D +IRQVV    +++E  +L++E HF+LFK KF K Y + EEH YRF VFKANL RA R Q +DP+A HGVT+FSDLT SEFRR+ LG+    +LP DA +APILPT +LP +FDWRD GAVT VK+QG+CGSCWSFS TGALEGAHFL+TG+LVSLSEQQLVDCDHECDPEE GSCDSGCNGGLMNSAFEY LK GG+ R
Sbjct:   25 DEDVLIRQVV----DETEPKVLSSEDHFTLFKKKFGKVYGSIEEHYYRFSVFKANLLRAMRHQKMDPSARHGVTQFSDLTRSEFRRKHLGVKGGFKLPKDANQAPILPTQNLPEEFDWRDRGAVTPVKNQGSCGSCWSFSTTGALEGAHFLATGKLVSLSEQQLVDCDHECDPEEEGSCDSGCNGGLMNSAFEYTLKTGGLMR 223          
BLAST of CN189466 vs. ExPASy Swiss-Prot
Match: CYSP1_MAIZE (Cysteine proteinase 1 OS=Zea mays GN=CCP1 PE=2 SV=1)

HSP 1 Score: 270.781 bits (691), Expect = 4.904e-72
Identity = 133/206 (64.56%), Postives = 155/206 (75.24%), Query Frame = 3
Query:   87 DDAMIRQVVPSDGEQSEDHLLNAEHHFSLFKSKFSKTYATQEEHDYRFRVFKANLRRAKRRQLLDPTAVHGVTKFSDLTPSEFRRQFLGLNRRLR-----LPADAQKAPILPTNDLPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEYILKAGGVE 689
            +D +IRQVVP  G    D  LNAE HF  F  +F K+Y   +EH YR  VFK NLRRA+R QLLDP+A HGVTKFSDLTP+EFRR +LGL +  R     L   A +AP+LPT+ LP DFDWRDHGAV  VK+QG+CGSCWSFSA+GALEGAH+L+TG+L  LSEQQ VDCDHECD  E  SCDSGCNGGLM +AF Y+ KAGG+E
Sbjct:   24 EDPLIRQVVP--GGDDNDLELNAESHFLSFVQRFGKSYKDADEHAYRLSVFKDNLRRARRHQLLDPSAEHGVTKFSDLTPAEFRRTYLGLRKSRRALLRELGESAHEAPVLPTDGLPDDFDWRDHGAVGPVKNQGSCGSCWSFSASGALEGAHYLATGKLEVLSEQQFVDCDHECDSSEPDSCDSGCNGGLMTTAFSYLQKAGGLE 227          
BLAST of CN189466 vs. ExPASy Swiss-Prot
Match: CYSP1_DICDI (Cysteine proteinase 1 OS=Dictyostelium discoideum GN=cprA PE=1 SV=2)

HSP 1 Score: 165.236 bits (417), Expect = 2.902e-40
Identity = 89/189 (47.09%), Postives = 116/189 (61.38%), Query Frame = 3
Query:  147 LNAEHHFSLFKSKFSKTYATQEEHDYRFRVFKANLRRAKRRQLL----DPTAVHGVTKFSDLTPSEFRRQFLGLNRRLRLPADAQKAPILPT---NDLPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHEC-DPEESGSCDSGCNGGLMNSAFEYILKAGGVE 689
            L  +  F  F+ KF+K Y+  EE+  RF +FK+NL + +   L+          GV KF+DL+  EF+  +L  N+      D   A  L     N +PT FDWR  GAVT VK+QG CGSCWSFS TG +EG HF+S  +LVSLSEQ LVDCDHEC + E   +CD GCNGGL  +A+ YI+K GG++
Sbjct:   23 LEEQSQFLEFQDKFNKKYS-HEEYLERFEIFKSNLGKIEELNLIAINHKADTKFGVNKFADLSSDEFKNYYLN-NKEAIFTDDLPVADYLDDEFINSIPTAFDWRTRGAVTPVKNQGQCGSCWSFSTTGNVEGQHFISQNKLVSLSEQNLVDCDHECMEYEGEQACDEGCNGGLQPNAYNYIIKNGGIQ 209          
BLAST of CN189466 vs. ExPASy Swiss-Prot
Match: CATL_SCHMA (Cathepsin L OS=Schistosoma mansoni GN=CL1 PE=2 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.379e-34
Identity = 80/183 (43.72%), Postives = 113/183 (61.75%), Query Frame = 3
Query:  150 NAEHHFSLFKSKFSKTYATQEEHDYRFRVFKANLRRAKRRQL-LDPTAVHGVTKFSDLTPSEFRRQFLGLNRRLRLPADAQKAPIL---PTNDLPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEYILKAGGV 686
            N +  +  FK K+ K Y   E+ + RF +FK+N+ +A+  Q+ +  +A++GVT +SDLT  EF R  L  +    +P+     P       N++P +FDWR+ GAVT VK+QG CGSCW+FS TG +E   F  TG+L+SLSEQQLVDCD           D GCNGGL ++A+E I+K GG+
Sbjct:   15 NVDEKYVQFKLKYRKQYHETED-EIRFNIFKSNILKAQLYQVFVRGSAIYGVTPYSDLTTDEFARTHLTAS--WVVPSSRSNTPTSLGKEVNNIPKNFDWREKGAVTEVKNQGMCGSCWAFSTTGNVESQWFRKTGKLLSLSEQQLVDCD---------GLDDGCNGGLPSNAYESIIKMGGL 185          
BLAST of CN189466 vs. ExPASy Swiss-Prot
Match: CATF_MOUSE (Cathepsin F OS=Mus musculus GN=Ctsf PE=2 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.542e-33
Identity = 80/177 (45.20%), Postives = 110/177 (62.15%), Query Frame = 3
Query:  165 FSLFKSKFSKTYATQEEHDYRFRVFKANLRRAKRRQLLDP-TAVHGVTKFSDLTPSEFRRQFLGLNRRLRLPADAQKAPILPTNDL-PTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEYILKAGGVE 689
            F  F + +++TY ++EE  +R  VF  N+ RA++ Q LD  TA +G+TKFSDLT  EF   +L  N  L+  +  + +P    NDL P ++DWR  GAVT VK+QG CGSCW+FS TG +EG  FL+ G L+SLSEQ+L+DCD           D  C GGL ++A+  I   GG+E
Sbjct:  165 FKDFMTTYNRTYESREEAQWRLTVFARNMIRAQKIQALDRGTAQYGITKFSDLTEEEFHTIYL--NPLLQKESGRKMSPAKSINDLAPPEWDWRKKGAVTEVKNQGMCGSCWAFSVTGNVEGQWFLNRGTLLSLSEQELLDCD---------KVDKACLGGLPSNAYAAIKNLGGLE 330          
BLAST of CN189466 vs. ExPASy Swiss-Prot
Match: XCP1_ARATH (Xylem cysteine proteinase 1 OS=Arabidopsis thaliana GN=XCP1 PE=1 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.014e-33
Identity = 81/193 (41.97%), Postives = 115/193 (59.59%), Query Frame = 3
Query:  138 DHLLNAEHHFSLFKS---KFSKTYATQEEHDYRFRVFKANLRRAKRRQLLDPTAVHGVTKFSDLTPSEFRRQFLGL-----NRRLRLPADAQKAPILPTNDLPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEYILKAGGVER 692
            +HL N +    LF+S   + SK Y + EE  +RF VF+ NL    +R     +   G+ +F+DLT  EF+ ++LGL     +R+ +  A+ +   I    DLP   DWR  GAV  VKDQG CGSCW+FS   A+EG + ++TG L SLSEQ+L+DCD         + +SGCNGGLM+ AF+YI+  GG+ +
Sbjct:   39 EHLTNTDKLLELFESWMSEHSKAYKSVEEKVHRFEVFRENLMHIDQRNNEINSYWLGLNEFADLTHEEFKGRYLGLAKPQFSRKRQPSANFRYRDI---TDLPKSVDWRKKGAVAPVKDQGQCGSCWAFSTVAAVEGINQITTGNLSSLSEQELIDCD--------TTFNSGCNGGLMDYAFQYIISTGGLHK 220          
BLAST of CN189466 vs. ExPASy Swiss-Prot
Match: ORYA_ORYSJ (Oryzain alpha chain OS=Oryza sativa subsp. japonica GN=Os04g0650000 PE=1 SV=2)

HSP 1 Score: 142.124 bits (357), Expect = 2.631e-33
Identity = 78/198 (39.39%), Postives = 113/198 (57.07%), Query Frame = 3
Query:  111 VPSDGEQSEDHLLNAEHHFSLFKSKFSKTYATQEEHDYRFRVFKANLRRAKRRQLLDPTAVH----GVTKFSDLTPSEFRRQFLGLNRRLRLPADAQKAPILPTND-LPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEYILKAGGVE 689
            + S GE+SE+    A   ++ +K++  K+Y    E + R+  F+ NLR            VH    G+ +F+DLT  E+R  +LGL  + R         +   N+ LP   DWR  GAV  +KDQG CGSCW+FSA  A+EG + + TG+L+SLSEQ+LVDCD         S + GCNGGLM+ AF++I+  GG++
Sbjct:   25 IVSYGERSEEE---ARRLYAEWKAEHGKSYNAVGEEERRYAAFRDNLRYIDEHNAAADAGVHSFRLGLNRFADLTNEEYRDTYLGLRNKPRRERKVSDRYLAADNEALPESVDWRTKGAVAEIKDQGGCGSCWAFSAIAAVEGINQIVTGDLISLSEQELVDCD--------TSYNEGCNGGLMDYAFDFIINNGGID 211          
BLAST of CN189466 vs. ExPASy Swiss-Prot
Match: CPR1_ARATH (Probable cysteine proteinase At3g19400 OS=Arabidopsis thaliana GN=At3g19400 PE=2 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 2.631e-33
Identity = 78/170 (45.88%), Postives = 109/170 (64.12%), Query Frame = 3
Query:  192 KTYATQEEHDYRFRVFKANLRRA-KRRQLLDPTAVHGVTKFSDLTPSEFRRQFLGLNRRLRLPADAQKAP--ILPTND-LPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEYILKAGGVE 689
            K Y    E + RF++FK NL+   +   + D T   G+T+F+DLT  EFR  +L   +++    D+ K    +    D LP + DWR +GAV  VKDQG CGSCW+FSA GA+EG + ++TGEL+SLSEQ+LVDCD        G  ++GC+GG+MN AFE+I+K GG+E
Sbjct:   53 KNYNGLGEKERRFKIFKDNLKFVDEHNSVPDRTFEVGLTRFADLTNEEFRAIYL--RKKMERTKDSVKTERYLYKEGDVLPDEVDWRANGAVVSVKDQGNCGSCWAFSAVGAVEGINQITTGELISLSEQELVDCDR-------GFVNAGCDGGIMNYAFEFIMKNGGIE 213          
The following BLAST results are available for this feature:
BLAST of CN189466 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 152
Match NameE-valueIdentityDescription
CYSP_PEA5.766e-8976.73Cysteine proteinase 15A OS=Pisum sativum PE=2 SV=1[more]
RD19A_ARATH1.053e-8273.50Cysteine proteinase RD19a OS=Arabidopsis thaliana ... [more]
A494_ARATH8.346e-8069.95Probable cysteine proteinase A494 OS=Arabidopsis t... [more]
CYSP1_MAIZE4.904e-7264.56Cysteine proteinase 1 OS=Zea mays GN=CCP1 PE=2 SV=... [more]
CYSP1_DICDI2.902e-4047.09Cysteine proteinase 1 OS=Dictyostelium discoideum ... [more]
CATL_SCHMA2.379e-3443.72Cathepsin L OS=Schistosoma mansoni GN=CL1 PE=2 SV=... [more]
CATF_MOUSE1.542e-3345.20Cathepsin F OS=Mus musculus GN=Ctsf PE=2 SV=1[more]
XCP1_ARATH2.014e-3341.97Xylem cysteine proteinase 1 OS=Arabidopsis thalian... [more]
ORYA_ORYSJ2.631e-3339.39Oryzain alpha chain OS=Oryza sativa subsp. japonic... [more]
CPR1_ARATH2.631e-3345.88Probable cysteine proteinase At3g19400 OS=Arabidop... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001O13_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001O13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189466 ID=CN189466; Name=CN189466; organism=Citrus sinensis; type=EST; length=692bp
GACGGAAAATGGAGCGCCTTATTCTCTCCTCTCTCCTCCTCCTCCTCCTA
TCTTCTGTGCTTGCGTCCGCTGTAGCTGTCAACGACGACGATGCTATGAT
CAGACAGGTCGTGCCGTCAGACGGCGAACAATCCGAAGATCATCTCCTGA
ACGCGGAGCACCACTTCTCCCTCTTCAAGTCCAAATTCTCCAAGACTTAC
GCCACCCAGGAGGAGCACGATTACCGATTCCGCGTGTTCAAGGCTAATCT
GCGCCGAGCAAAGCGACGCCAGCTCCTGGACCCCACTGCTGTCCACGGTG
TCACCAAGTTCTCCGACTTAACGCCGTCTGAATTCCGCCGTCAGTTCCTT
GGCTTGAATAGGCGGCTTCGGCTGCCAGCTGACGCTCAAAAGGCTCCTAT
TCTCCCCACCAACGATCTTCCTACTGACTTTGACTGGCGTGATCACGGCG
CCGTTACTGGCGTCAAAGACCAGGGCGCATGTGGATCGTGCTGGTCGTTT
AGTGCAACCGGCGCTTTGGAGGGAGCGCACTTCTTATCGACGGGCGAGCT
TGTCAGCCTCAGTGAGCAACAGCTTGTGGACTGTGATCACGAGTGTGATC
CAGAGGAATCTGGTTCATGTGACTCTGGGTGCAATGGTGGGCTAATGAAC
TCTGCCTTTGAGTACATACTCAAGGCTGGTGGGGTTGAGCGA
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