CN189463

Overview
NameCN189463
Unique NameCN189463
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length797
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN189463_ssr281 microsatellite CN189463_ssr281:281..295. BLAST: Citrus ESTs to Prunus persica proteins V1
CN189463_ssr109 microsatellite CN189463_ssr109:109..120. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN189463 vs. ExPASy Swiss-Prot
Match: NFYC2_ARATH (Nuclear transcription factor Y subunit C-2 OS=Arabidopsis thaliana GN=NFYC2 PE=1 SV=2)

HSP 1 Score: 179.489 bits (454), Expect = 1.890e-44
Identity = 88/93 (94.62%), Postives = 91/93 (97.85%), Query Frame = 3 
Query:  519 MFWSNQMQEIEQTADFKNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFLV 797
            MFW+NQMQEIE T DFKNH+LPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLR+WIHTEENKRRTLQKNDIAAAISRTDVFDFLV
Sbjct:   57 MFWANQMQEIEHTTDFKNHTLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRAWIHTEENKRRTLQKNDIAAAISRTDVFDFLV 149
[Close]
BLAST of CN189463 vs. ExPASy Swiss-Prot
Match: NFYC9_ARATH (Nuclear transcription factor Y subunit C-9 OS=Arabidopsis thaliana GN=NFYC9 PE=2 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 1.147e-41
Identity = 81/92 (88.04%), Postives = 88/92 (95.65%), Query Frame = 3 
Query:  522 FWSNQMQEIEQTADFKNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFLV 797
            FW NQ +EIE+T DFKNHSLPLARIKKIMKADEDVRMISAEAPV+FA+ACEMFILELTLRSW HTEENKRRTLQKNDIAAA++RTD+FDFLV
Sbjct:   62 FWENQFKEIEKTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVVFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAVTRTDIFDFLV 153
[Close]
BLAST of CN189463 vs. ExPASy Swiss-Prot
Match: NFYC3_ARATH (Nuclear transcription factor Y subunit C-3 OS=Arabidopsis thaliana GN=NFYC3 PE=1 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 5.692e-41
Identity = 80/92 (86.96%), Postives = 87/92 (94.57%), Query Frame = 3 
Query:  522 FWSNQMQEIEQTADFKNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFLV 797
            FW  Q +EIE+T DFKNHSLPLARIKKIMKADEDVRMISAEAPV+FA+ACEMFILELTLRSW HTEENKRRTLQKNDIAAA++RTD+FDFLV
Sbjct:   52 FWETQFKEIEKTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVVFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAVTRTDIFDFLV 143
[Close]
BLAST of CN189463 vs. ExPASy Swiss-Prot
Match: NFYC4_ARATH (Nuclear transcription factor Y subunit C-4 OS=Arabidopsis thaliana GN=NFYC4 PE=2 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 1.268e-40
Identity = 79/93 (84.95%), Postives = 87/93 (93.55%), Query Frame = 3 
Query:  519 MFWSNQMQEIEQTADFKNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFLV 797
            MFW+ Q QEIEQ  DFKNH LPLARIKKIMKADEDVRMISAEAP++FAKACE+FILELT+RSW+H EENKRRTLQKNDIAAAI+RTD+FDFLV
Sbjct:   59 MFWTYQRQEIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLV 151
[Close]
BLAST of CN189463 vs. ExPASy Swiss-Prot
Match: NFYC1_ARATH (Nuclear transcription factor Y subunit C-1 OS=Arabidopsis thaliana GN=NFYC1 PE=1 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 2.825e-40
Identity = 78/93 (83.87%), Postives = 87/93 (93.55%), Query Frame = 3 
Query:  519 MFWSNQMQEIEQTADFKNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFLV 797
            +FW+ Q QEIEQ  DFKNH LPLARIKKIMKADEDVRMISAEAP++FAKACE+FILELT+RSW+H EENKRRTLQKNDIAAAI+RTD+FDFLV
Sbjct:   46 LFWTYQRQEIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLV 138
[Close]
BLAST of CN189463 vs. ExPASy Swiss-Prot
Match: NFYC_DICDI (Nuclear transcription factor Y subunit gamma OS=Dictyostelium discoideum GN=nfyc-1 PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 7.451e-33
Identity = 74/157 (47.13%), Postives = 98/157 (62.42%), Query Frame = 3 
Query:  348 YPPYQTAPLVASGTPAVAVPSPTQP------PSTFASSPXXXXXXXXXXXXXXXXXXXXXXXXM-FWSNQMQEIEQTADFKNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFLV 797
            YP    +    +GTPA++ PS T P      P+T  S+P                          FWS+Q+++I +T DFK H LPLARIKKIMK+D+DV  IS+EAP++FAKACE+ ILE+T RSW+HTE NKRRTLQ+ DI  ++SR + FDFL+
Sbjct:  187 YPSLNDSSSNGNGTPALSSPSSTTPHPTTPHPTTPTSTPNQRFQSNGSSSFQNQLQNHLENKLSSFWSSQLRDIHKTEDFKTHELPLARIKKIMKSDKDVNKISSEAPILFAKACEILILEMTHRSWVHTEMNKRRTLQRTDIINSLSRCETFDFLI 343
[Close]
BLAST of CN189463 vs. ExPASy Swiss-Prot
Match: NFYC_RAT (Nuclear transcription factor Y subunit gamma OS=Rattus norvegicus GN=Nfyc PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 2.243e-29
Identity = 64/94 (68.09%), Postives = 76/94 (80.85%), Query Frame = 3 
Query:  522 FWSNQMQEIEQTA--DFKNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFLV 797
            FW   M+EI      DF+   LPLARIKKIMK DEDV+MISAEAPV+FAKA ++FI ELTLR+WIHTE+NKRRTLQ+NDIA AI++ D FDFL+
Sbjct:   22 FWPRVMEEIRNLTVKDFRVQELPLARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAITKFDQFDFLI 115
[Close]
BLAST of CN189463 vs. ExPASy Swiss-Prot
Match: NFYC_PONAB (Nuclear transcription factor Y subunit gamma OS=Pongo abelii GN=NFYC PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 2.243e-29
Identity = 64/94 (68.09%), Postives = 76/94 (80.85%), Query Frame = 3 
Query:  522 FWSNQMQEIEQTA--DFKNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFLV 797
            FW   M+EI      DF+   LPLARIKKIMK DEDV+MISAEAPV+FAKA ++FI ELTLR+WIHTE+NKRRTLQ+NDIA AI++ D FDFL+
Sbjct:   22 FWPRVMEEIRNLTVKDFRVQELPLARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAITKFDQFDFLI 115
[Close]
BLAST of CN189463 vs. ExPASy Swiss-Prot
Match: NFYC_MOUSE (Nuclear transcription factor Y subunit gamma OS=Mus musculus GN=Nfyc PE=2 SV=2)

HSP 1 Score: 129.413 bits (324), Expect = 2.243e-29
Identity = 64/94 (68.09%), Postives = 76/94 (80.85%), Query Frame = 3 
Query:  522 FWSNQMQEIEQTA--DFKNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFLV 797
            FW   M+EI      DF+   LPLARIKKIMK DEDV+MISAEAPV+FAKA ++FI ELTLR+WIHTE+NKRRTLQ+NDIA AI++ D FDFL+
Sbjct:   22 FWPRVMEEIRNLTVKDFRVQELPLARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAITKFDQFDFLI 115
[Close]
BLAST of CN189463 vs. ExPASy Swiss-Prot
Match: NFYC_HUMAN (Nuclear transcription factor Y subunit gamma OS=Homo sapiens GN=NFYC PE=1 SV=3)

HSP 1 Score: 129.413 bits (324), Expect = 2.243e-29
Identity = 64/94 (68.09%), Postives = 76/94 (80.85%), Query Frame = 3 
Query:  522 FWSNQMQEIEQTA--DFKNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFLV 797
            FW   M+EI      DF+   LPLARIKKIMK DEDV+MISAEAPV+FAKA ++FI ELTLR+WIHTE+NKRRTLQ+NDIA AI++ D FDFL+
Sbjct:   22 FWPRVMEEIRNLTVKDFRVQELPLARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAITKFDQFDFLI 115
The following BLAST results are available for this feature:
BLAST of CN189463 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
NFYC2_ARATH1.890e-4494.62Nuclear transcription factor Y subunit C-2 OS=Arab... [more]
NFYC9_ARATH1.147e-4188.04Nuclear transcription factor Y subunit C-9 OS=Arab... [more]
NFYC3_ARATH5.692e-4186.96Nuclear transcription factor Y subunit C-3 OS=Arab... [more]
NFYC4_ARATH1.268e-4084.95Nuclear transcription factor Y subunit C-4 OS=Arab... [more]
NFYC1_ARATH2.825e-4083.87Nuclear transcription factor Y subunit C-1 OS=Arab... [more]
NFYC_DICDI7.451e-3347.13Nuclear transcription factor Y subunit gamma OS=Di... [more]
NFYC_RAT2.243e-2968.09Nuclear transcription factor Y subunit gamma OS=Ra... [more]
NFYC_PONAB2.243e-2968.09Nuclear transcription factor Y subunit gamma OS=Po... [more]
NFYC_MOUSE2.243e-2968.09Nuclear transcription factor Y subunit gamma OS=Mu... [more]
NFYC_HUMAN2.243e-2968.09Nuclear transcription factor Y subunit gamma OS=Ho... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001O10_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001O10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189463 ID=CN189463; Name=CN189463; organism=Citrus sinensis; type=EST; length=797bp
GAGGCCTTACTGGACGACACGTGTCATCGCACAGATACCCGCAGAAGTCT
CCTCGGTGTCCGAAAGTTTTCCAAGACTTGAAAATAAACATTCAAAGGGC
TCTCTCCGTCCCTCCCTCCCTTTTTAAGTTTAACCTTCACTCTACTTTCT
CTCTCTTAGGGTTTCTGCTAACTCAATAAGCTCTTCTTGAAGATTCAGCT
CGAGCAATCATATTGTGATGAGAATATAGCTTGAAGAGGAAAAGTTTTAA
AAAATTGGGCATGGATCAATCAGATCAAACACAACAACAACAACAGCAAC
AGCAGCAGCCTGTGATGGGGGTTGTAGCTGGTGCTGGTCAGATGTCATAT
CCTCCCTACCAAACGGCTCCTTTGGTGGCTTCTGGTACTCCTGCTGTGGC
TGTCCCCTCCCCAACCCAGCCTCCATCTACTTTCGCCAGTTCTCCGCACC
AGCTTGCCTACCAACAAGCCCAGCACTTTCACCACCAACAGCAGCAGCAA
CAACAGCAGCAGCTTCAGATGTTCTGGTCCAATCAAATGCAAGAAATTGA
GCAAACGGCCGACTTCAAGAATCACAGCCTCCCACTTGCTAGGATCAAGA
AAATTATGAAAGCTGATGAAGATGTGAGAATGATTTCAGCAGAGGCCCCT
GTCATATTTGCCAAGGCTTGTGAGATGTTTATTTTGGAACTAACTCTGCG
GTCTTGGATCCACACAGAAGAGAATAAAAGGAGAACACTGCAAAAGAATG
ATATAGCGGCTGCCATTTCAAGGACTGATGTTTTTGATTTCTTGGTG
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