CN189458

Overview
NameCN189458
Unique NameCN189458
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length646
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2335 contig Csv1_Contig2335:45..690. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CN189458 vs. ExPASy Swiss-Prot
Match: MIP1_ARATH (MND1-interacting protein 1 OS=Arabidopsis thaliana GN=MIP1 PE=1 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 1.607e-42
Identity = 88/146 (60.27%), Postives = 108/146 (73.97%), Query Frame = -1 
Query:  221 NKRKLEALRLKIEIDFQRHKDDLQRLEQEFSRLKAFAEFNEQNHQSNTLPSGKLERAKPQGETIARLLHELDELEDFSEKETNCDRDCIICLKDEVSIVFLPCAHQVLCASCSDNY----GKKGKATCPCCRVPIEQRIRVFGASS 646
            NKRKLE LRLKIE+DFQRHKDD QRLEQE  RLKA ++ ++ +H SN     K    K QGE IA+LL E+D+LE   + E N DR+CIIC+KDEVS+VFLPCAHQV+C SCSD++        K TCPCCR  ++QRIR+FGA+S
Sbjct:  571 NKRKLETLRLKIELDFQRHKDDHQRLEQELGRLKASSD-SDSSHISNNAWKPK----KSQGENIAKLLEEIDKLEGSYDNEANYDRECIICMKDEVSVVFLPCAHQVVCGSCSDSFFASNNGGSKVTCPCCRGLVQQRIRIFGATS 711
The following BLAST results are available for this feature:
BLAST of CN189458 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
MIP1_ARATH1.607e-4260.27MND1-interacting protein 1 OS=Arabidopsis thaliana... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS06_0001O08_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001O08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189458 ID=CN189458; Name=CN189458; organism=Citrus sinensis; type=EST; length=646bp
TTTTTTTTTTTTTTTTTCCCAACCCAAGTAAAATGCATTTCACTTATTTA
GGCTTGAATTTTCTTATTTACATACCAACCATATTCCACTGAAGCACTTC
AGCATATCAAGACAGGTTTAAAAGCATGCAGTCCAAATAGCCGGGACAAA
ATTTAAATTGCATAATATCAGTATACCTGAAGGAGATTTGACAGCATTTT
CTTAAAACAAACTACGACTATGAACTGGCACCAAAAACACGGATCCTCTG
TTCAATTGGAACCCGGCAGCATGGACATGTAGCTTTCCCCTTCTTTCCAT
AATTGTCACTGCAACTGGCACACAAAACTTGGTGCGCACACGGCAAGAAA
ACAATTGACACTTCATCTTTCAAACAAATTATGCAGTCCCTATCACAGTT
GGTTTCTTTCTCAGAAAAATCCTCCAGTTCATCTAATTCATGGAGCAACC
TAGCAATTGTTTCTCCTTGGGGCTTTGCCCTCTCTAACTTTCCCGATGGT
AAAGTATTCGACTGATGATTCTGCTCATTAAACTCAGCAAAAGCTTTTAG
GCGCGAAAACTCCTGCTCAAGTCTTTGCAAATCATCCTTATGACGCTGGA
AGTCTATCTCTATCTTCAGCCGCAAAGCCTCAAGCTTTCTTTTATT
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