CN189457

Overview
NameCN189457
Unique NameCN189457
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length514
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN189457_ssr137 microsatellite CN189457_ssr137:137..158. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig10871 contig Csv1_Contig10871:99..616. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN189457 vs. ExPASy Swiss-Prot
Match: HFA7A_ARATH (Heat stress transcription factor A-7a OS=Arabidopsis thaliana GN=HSFA7A PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 3.443e-24
Identity = 47/59 (79.66%), Postives = 53/59 (89.83%), Query Frame = 3
Query:  336 PQPMEGLHDTGPPPFLTKTYEMVDDPNTNEVVSWSRGGVSFVVWDPHAFSTSLLPRHFK 512
            PQPMEGLH+  PPPFLTKT+EMVDDPNT+ +VSW+RGG SFVVWD H+FST LLPRHFK
Sbjct:   16 PQPMEGLHENAPPPFLTKTFEMVDDPNTDHIVSWNRGGTSFVVWDLHSFSTILLPRHFK 74          
BLAST of CN189457 vs. ExPASy Swiss-Prot
Match: HFA2B_ORYSJ (Heat stress transcription factor A-2b OS=Oryza sativa subsp. japonica GN=HSFA2B PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 3.807e-23
Identity = 54/90 (60.00%), Postives = 64/90 (71.11%), Query Frame = 3
Query:  255 IKEEQP----GGIPSESGADEAAVMTMMMAAPQPMEGLHDTGPPPFLTKTYEMVDDPNTNEVVSWSRGGVSFVVWDPHAFSTSLLPRHFK 512
            +KEE+     GG+   +G D AA +   +A P+PMEGLHD GPPPFLTKTY+MVDD  T+  VSWS    SFVVWDPHAF+T LLPR FK
Sbjct:    9 VKEEESHGDGGGLEVVAGEDGAAAVAAGVA-PRPMEGLHDAGPPPFLTKTYDMVDDAGTDAAVSWSATSNSFVVWDPHAFATVLLPRFFK 97          
BLAST of CN189457 vs. ExPASy Swiss-Prot
Match: HFA7B_ARATH (Heat stress transcription factor A-7b OS=Arabidopsis thaliana GN=HSFA7B PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 7.179e-22
Identity = 43/62 (69.35%), Postives = 52/62 (83.87%), Query Frame = 3
Query:  327 MAAPQPMEGLHDTGPPPFLTKTYEMVDDPNTNEVVSWSRGGVSFVVWDPHAFSTSLLPRHFK 512
            M  P PMEGL + GP PFLTKT+EMV DPNTN +VSW+RGG+SFVVWDPH+FS ++LP +FK
Sbjct:   12 MPPPVPMEGLQEAGPSPFLTKTFEMVGDPNTNHIVSWNRGGISFVVWDPHSFSATILPLYFK 73          
BLAST of CN189457 vs. ExPASy Swiss-Prot
Match: HSFA2_ARATH (Heat stress transcription factor A-2 OS=Arabidopsis thaliana GN=HSFA2 PE=1 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 9.376e-22
Identity = 47/74 (63.51%), Postives = 59/74 (79.73%), Query Frame = 3
Query:  291 SGADEAAVMTMMMAAPQPMEGLHDTGPPPFLTKTYEMVDDPNTNEVVSWSRGGVSFVVWDPHAFSTSLLPRHFK 512
            +G+  A+      ++P+PMEGL++TGPPPFLTKTYEMV+DP T+ VVSWS G  SFVVWD H FST+LLPR+FK
Sbjct:   16 TGSVAASSSVGSSSSPRPMEGLNETGPPPFLTKTYEMVEDPATDTVVSWSNGRNSFVVWDSHKFSTTLLPRYFK 89          
BLAST of CN189457 vs. ExPASy Swiss-Prot
Match: HFA6B_ARATH (Heat stress transcription factor A-6b OS=Arabidopsis thaliana GN=HSFA6b PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 9.376e-22
Identity = 53/106 (50.00%), Postives = 67/106 (63.21%), Query Frame = 3
Query:  237 MNPYY-MIKEEQPGGIP-------------SESGADEAAVMTMMMAAPQPMEGLHDTGPPPFLTKTYEMVDDPNTNEVVSWSRGGVSFVVWDPHAFSTSLLPRHFK 512
            M+P +  IKEE P G               S S A+ A      ++ PQP+EGLH++GPPPFLTKTY++V+D  TN VVSWS+   SF+VWDP AFS +LLPR FK
Sbjct:    1 MDPSFRFIKEEFPAGFSDSPSPPSSSSYLYSSSMAEAAINDPTTLSYPQPLEGLHESGPPPFLTKTYDLVEDSRTNHVVSWSKSNNSFIVWDPQAFSVTLLPRFFK 106          
BLAST of CN189457 vs. ExPASy Swiss-Prot
Match: HFA2C_ORYSJ (Heat stress transcription factor A-2c OS=Oryza sativa subsp. japonica GN=HSFA2C PE=2 SV=2)

HSP 1 Score: 102.449 bits (254), Expect = 1.225e-21
Identity = 45/61 (73.77%), Postives = 52/61 (85.25%), Query Frame = 3
Query:  330 AAPQPMEGLHDTGPPPFLTKTYEMVDDPNTNEVVSWSRGGVSFVVWDPHAFSTSLLPRHFK 512
            AAP+PMEGLH+ GPPPFLTKTY++V+DP T+ VVSWSR G SFVVWDPH F+  LLPR FK
Sbjct:   27 AAPRPMEGLHEVGPPPFLTKTYDLVEDPATDGVVSWSRAGNSFVVWDPHVFADLLLPRLFK 87          
BLAST of CN189457 vs. ExPASy Swiss-Prot
Match: HFA2D_ORYSJ (Heat stress transcription factor A-2d OS=Oryza sativa subsp. japonica GN=HSFA2D PE=2 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 3.563e-21
Identity = 48/87 (55.17%), Postives = 56/87 (64.37%), Query Frame = 3
Query:  252 MIKEEQPGGIPSESGADEAAVMTMMMAAPQPMEGLHDTGPPPFLTKTYEMVDDPNTNEVVSWSRGGVSFVVWDPHAFSTSLLPRHFK 512
            M+KEE P   P E              AP+PMEGLH+ GPPPFLTKT+++V DP T+ VVSW R G SFVVWDPH F+   LPR FK
Sbjct:    8 MVKEEWPPSSPEEG------------EAPRPMEGLHEVGPPPFLTKTFDLVADPATDGVVSWGRAGSSFVVWDPHVFAAVFLPRFFK 82          
BLAST of CN189457 vs. ExPASy Swiss-Prot
Match: HFA2E_ORYSJ (Heat stress transcription factor A-2e OS=Oryza sativa subsp. japonica GN=HSFA2E PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.955e-19
Identity = 42/59 (71.19%), Postives = 47/59 (79.66%), Query Frame = 3
Query:  336 PQPMEGLHDTGPPPFLTKTYEMVDDPNTNEVVSWSRGGVSFVVWDPHAFSTSLLPRHFK 512
            P+PM+GL D GPPPFLTKTY+MVDDP T+ VVSWS    SFVVWDPH F   LLPR+FK
Sbjct:   25 PRPMDGLADGGPPPFLTKTYDMVDDPTTDAVVSWSATNNSFVVWDPHLFGNVLLPRYFK 83          
BLAST of CN189457 vs. ExPASy Swiss-Prot
Match: HSF30_SOLPE (Heat shock factor protein HSF30 OS=Solanum peruvianum GN=HSF30 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 7.429e-19
Identity = 40/57 (70.18%), Postives = 48/57 (84.21%), Query Frame = 3
Query:  342 PMEGLHDTGPPPFLTKTYEMVDDPNTNEVVSWSRGGVSFVVWDPHAFSTSLLPRHFK 512
            PMEGLHD GPPPFL+KTYEMV+D +T++V+SWS    SF+VWD H FST+LLPR FK
Sbjct:   20 PMEGLHDVGPPPFLSKTYEMVEDSSTDQVISWSTTRNSFIVWDSHKFSTTLLPRFFK 76          
BLAST of CN189457 vs. ExPASy Swiss-Prot
Match: HFA2A_ORYSJ (Heat stress transcription factor A-2a OS=Oryza sativa subsp. japonica GN=HSFA2A PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 2.162e-18
Identity = 47/98 (47.96%), Postives = 62/98 (63.27%), Query Frame = 3
Query:  237 MNPYYMIKEEQPGGIPSESGADEAAVMTM------MMAAPQPMEGLHDTGPPPFLTKTYEMVDDPNTNEVVSWSRGGVSFVVWDPHAFSTSLLPRHFK 512
            MNP  +I +E+     + + A  A   +       +M  P+PMEGL + GPPPFL KTYE+VDDP T+ V+SW   G SFVVWD +AF+  LLPR+FK
Sbjct:    1 MNPLRVIVKEEELDFAAAAAAAAAGEGSPSSWAVGVMDLPRPMEGLGEAGPPPFLCKTYEVVDDPGTDTVISWGFAGNSFVVWDANAFAAVLLPRYFK 98          
The following BLAST results are available for this feature:
BLAST of CN189457 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
HFA7A_ARATH3.443e-2479.66Heat stress transcription factor A-7a OS=Arabidops... [more]
HFA2B_ORYSJ3.807e-2360.00Heat stress transcription factor A-2b OS=Oryza sat... [more]
HFA7B_ARATH7.179e-2269.35Heat stress transcription factor A-7b OS=Arabidops... [more]
HSFA2_ARATH9.376e-2263.51Heat stress transcription factor A-2 OS=Arabidopsi... [more]
HFA6B_ARATH9.376e-2250.00Heat stress transcription factor A-6b OS=Arabidops... [more]
HFA2C_ORYSJ1.225e-2173.77Heat stress transcription factor A-2c OS=Oryza sat... [more]
HFA2D_ORYSJ3.563e-2155.17Heat stress transcription factor A-2d OS=Oryza sat... [more]
HFA2E_ORYSJ1.955e-1971.19Heat stress transcription factor A-2e OS=Oryza sat... [more]
HSF30_SOLPE7.429e-1970.18Heat shock factor protein HSF30 OS=Solanum peruvia... [more]
HFA2A_ORYSJ2.162e-1847.96Heat stress transcription factor A-2a OS=Oryza sat... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001O07_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001O07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189457 ID=CN189457; Name=CN189457; organism=Citrus sinensis; type=EST; length=514bp
AAATATCAGTGCCACTTTGTCTTTTTATCAACTTTCTTTTTGACCTTTTT
TGTTTTTCCTTAACCATGGGCATCAATTTGAGTTTCCATAAGTTAATCAT
ACAATTCACCTGTTGATTCAATTGTTCTCTTCTTATACACACACACACAC
ACACACACATAAGTCTTCTCCGACTGCTCCGTTTTTCTTTTTTCGCTTCT
TCGTTTATAAACGATCAGAATCTTTCATTAGGCTAAATGAATCCGTATTA
CATGATAAAAGAAGAGCAGCCGGGTGGGATTCCATCGGAATCCGGAGCCG
ATGAGGCAGCAGTAATGACGATGATGATGGCGGCGCCGCAGCCGATGGAA
GGTCTGCATGACACAGGGCCGCCGCCGTTTCTGACGAAGACATATGAAAT
GGTGGATGACCCAAATACAAATGAAGTAGTTTCTTGGAGCAGGGGAGGTG
TTAGCTTTGTTGTTTGGGACCCTCATGCTTTCTCCACTTCTCTTCTTCCT
AGACACTTCAAGCA
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