CN189455

Overview
NameCN189455
Unique NameCN189455
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length473
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189455 vs. ExPASy Swiss-Prot
Match: SODM_HEVBR (Superoxide dismutase [Mn], mitochondrial OS=Hevea brasiliensis GN=SODA PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 3.599e-19
Identity = 40/49 (81.63%), Postives = 43/49 (87.76%), Query Frame = -3
Query:  322 PILVPLLGIDVWEHAYYLHSKNVKPVYLKNIWNLMNWKYASDVYQKECP 468
            P LVPLLGIDVWEHAYYL  KNV+P YLKNIW +MNWKYAS+VY KECP
Sbjct:  183 PTLVPLLGIDVWEHAYYLQYKNVRPDYLKNIWKVMNWKYASEVYAKECP 231          
BLAST of CN189455 vs. ExPASy Swiss-Prot
Match: SODM_CAPAN (Superoxide dismutase [Mn], mitochondrial OS=Capsicum annuum GN=SODA PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 8.019e-19
Identity = 39/49 (79.59%), Postives = 44/49 (89.80%), Query Frame = -3
Query:  322 PILVPLLGIDVWEHAYYLHSKNVKPVYLKNIWNLMNWKYASDVYQKECP 468
            P LVPLLGIDVWEHAYYL  KNVKP YLKNIW ++NWKYA++VY+KECP
Sbjct:  180 PNLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWKVINWKYAAEVYEKECP 228          
BLAST of CN189455 vs. ExPASy Swiss-Prot
Match: SODM_NICPL (Superoxide dismutase [Mn], mitochondrial OS=Nicotiana plumbaginifolia GN=SODA PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.786e-18
Identity = 38/47 (80.85%), Postives = 43/47 (91.49%), Query Frame = -3
Query:  322 LVPLLGIDVWEHAYYLHSKNVKPVYLKNIWNLMNWKYASDVYQKECP 462
            LVPLLGIDVWEHAYYL  KNV+P YLKNIW +MNWKYA++VY+KECP
Sbjct:  182 LVPLLGIDVWEHAYYLQYKNVRPDYLKNIWKVMNWKYANEVYEKECP 228          
BLAST of CN189455 vs. ExPASy Swiss-Prot
Match: SODM_PRUPE (Superoxide dismutase [Mn], mitochondrial OS=Prunus persica GN=SOD PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 6.788e-18
Identity = 38/49 (77.55%), Postives = 43/49 (87.76%), Query Frame = -3
Query:  322 PILVPLLGIDVWEHAYYLHSKNVKPVYLKNIWNLMNWKYASDVYQKECP 468
            P LVPLLGIDVWEHAYYL  KNV+P YLKNIW ++NWKYAS+VY+KE P
Sbjct:  180 PTLVPLLGIDVWEHAYYLQYKNVRPDYLKNIWKVINWKYASEVYEKESP 228          
BLAST of CN189455 vs. ExPASy Swiss-Prot
Match: SODM_ARATH (Superoxide dismutase [Mn], mitochondrial OS=Arabidopsis thaliana GN=SODA PE=1 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 3.725e-16
Identity = 34/45 (75.56%), Postives = 41/45 (91.11%), Query Frame = -3
Query:  328 LVPLLGIDVWEHAYYLHSKNVKPVYLKNIWNLMNWKYASDVYQKE 462
            LVPL+GIDVWEHAYYL  KNV+P YLKN+W ++NWKYAS+VY+KE
Sbjct:  185 LVPLVGIDVWEHAYYLQYKNVRPEYLKNVWKVINWKYASEVYEKE 229          
BLAST of CN189455 vs. ExPASy Swiss-Prot
Match: SODM_PEA (Superoxide dismutase [Mn], mitochondrial OS=Pisum sativum GN=SODA PE=2 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 6.353e-16
Identity = 35/45 (77.78%), Postives = 41/45 (91.11%), Query Frame = -3
Query:  328 LVPLLGIDVWEHAYYLHSKNVKPVYLKNIWNLMNWKYASDVYQKE 462
            LVPLLGIDVWEHAYYL  KNV+P YLKNIW ++NWK+AS+VY+KE
Sbjct:  187 LVPLLGIDVWEHAYYLQYKNVRPDYLKNIWKVINWKHASEVYEKE 231          
BLAST of CN189455 vs. ExPASy Swiss-Prot
Match: SODM_ORYSJ (Superoxide dismutase [Mn], mitochondrial OS=Oryza sativa subsp. japonica GN=SODA PE=2 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 9.174e-15
Identity = 33/43 (76.74%), Postives = 37/43 (86.05%), Query Frame = -3
Query:  334 LVPLLGIDVWEHAYYLHSKNVKPVYLKNIWNLMNWKYASDVYQ 462
            LVPLLGIDVWEHAYYL  KNV+P YL NIW +MNWKYA +VY+
Sbjct:  185 LVPLLGIDVWEHAYYLQYKNVRPDYLSNIWKVMNWKYAGEVYE 227          
BLAST of CN189455 vs. ExPASy Swiss-Prot
Match: SODM4_MAIZE (Superoxide dismutase [Mn] 3.4, mitochondrial OS=Zea mays GN=SODA.3 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 9.174e-15
Identity = 33/43 (76.74%), Postives = 37/43 (86.05%), Query Frame = -3
Query:  334 LVPLLGIDVWEHAYYLHSKNVKPVYLKNIWNLMNWKYASDVYQ 462
            LVPLLGIDVWEHAYYL  KNV+P YL NIW +MNWKYA +VY+
Sbjct:  187 LVPLLGIDVWEHAYYLQYKNVRPDYLNNIWKVMNWKYAGEVYE 229          
BLAST of CN189455 vs. ExPASy Swiss-Prot
Match: SODM3_MAIZE (Superoxide dismutase [Mn] 3.3, mitochondrial OS=Zea mays GN=SODA.2 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 9.174e-15
Identity = 33/43 (76.74%), Postives = 37/43 (86.05%), Query Frame = -3
Query:  334 LVPLLGIDVWEHAYYLHSKNVKPVYLKNIWNLMNWKYASDVYQ 462
            LVPLLGIDVWEHAYYL  KNV+P YL NIW +MNWKYA +VY+
Sbjct:  187 LVPLLGIDVWEHAYYLQYKNVRPDYLNNIWKVMNWKYAGEVYE 229          
BLAST of CN189455 vs. ExPASy Swiss-Prot
Match: SODM2_MAIZE (Superoxide dismutase [Mn] 3.2, mitochondrial OS=Zea mays GN=SODA.1 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 9.174e-15
Identity = 33/43 (76.74%), Postives = 37/43 (86.05%), Query Frame = -3
Query:  334 LVPLLGIDVWEHAYYLHSKNVKPVYLKNIWNLMNWKYASDVYQ 462
            LVPLLGIDVWEHAYYL  KNV+P YL NIW +MNWKYA +VY+
Sbjct:  186 LVPLLGIDVWEHAYYLQYKNVRPDYLNNIWKVMNWKYAGEVYE 228          
The following BLAST results are available for this feature:
BLAST of CN189455 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
SODM_HEVBR3.599e-1981.63Superoxide dismutase [Mn], mitochondrial OS=Hevea ... [more]
SODM_CAPAN8.019e-1979.59Superoxide dismutase [Mn], mitochondrial OS=Capsic... [more]
SODM_NICPL1.786e-1880.85Superoxide dismutase [Mn], mitochondrial OS=Nicoti... [more]
SODM_PRUPE6.788e-1877.55Superoxide dismutase [Mn], mitochondrial OS=Prunus... [more]
SODM_ARATH3.725e-1675.56Superoxide dismutase [Mn], mitochondrial OS=Arabid... [more]
SODM_PEA6.353e-1677.78Superoxide dismutase [Mn], mitochondrial OS=Pisum ... [more]
SODM_ORYSJ9.174e-1576.74Superoxide dismutase [Mn], mitochondrial OS=Oryza ... [more]
SODM4_MAIZE9.174e-1576.74Superoxide dismutase [Mn] 3.4, mitochondrial OS=Ze... [more]
SODM3_MAIZE9.174e-1576.74Superoxide dismutase [Mn] 3.3, mitochondrial OS=Ze... [more]
SODM2_MAIZE9.174e-1576.74Superoxide dismutase [Mn] 3.2, mitochondrial OS=Ze... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001O06_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001O06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189455 ID=CN189455; Name=CN189455; organism=Citrus sinensis; type=EST; length=473bp
GCATTGTATGATCGTTACGCCACTTAAACAAATATGAAAATATGAAACCC
ACATCATACACTATTCACAAGATCTCGTGCACAATAGTGTAGATACAAAA
TAGAGCATAAACNCCCACATATTATTTTGTGATGTCACACTAAGGGATAC
ACAAGTTAACACTCACCTTCAAAAGAAAGGGTGTGCTGTCATCACGTTGC
AAATTATTCGTTTTATTGTCACTCTCAGCGTGAAAAGCTGCAAGGGTATT
CGCCTCTTGAACCCAAGAGAGAACCCAGATCAAACAAAGAACTCCATGCT
CAAGGAAGAGCTCCAAGCTTAAGGGCATTCTTTCTGATACACATCACTAG
CATACTTCCAGTTCATTAAGTTCCAAATGTTTTTCAAATAAACGGGTTTG
ACATTCTTGGAATGTAAGTAGTATGCATGCTCCCAAACATCTATACCAAG
CAAAGGAACCAAAATTGGGGCTT
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