CN189453

Overview
NameCN189453
Unique NameCN189453
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length666
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3249 contig Csv1_Contig3249:207..871. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN189453 vs. ExPASy Swiss-Prot
Match: ACP1_CASGL (Acyl carrier protein 1, chloroplastic OS=Casuarina glauca GN=ACP1 PE=2 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 5.981e-32
Identity = 78/102 (76.47%), Postives = 82/102 (80.39%), Query Frame = -2
Query:  306 GKSFPSLRMRSAPRFRVSCAAKPETVDKVCQIVKKQLALPADTTVTGESKFAALGADSLDTVEIVMGLXXXXXXXXXXESAQTISTVQDAADLIEKLIETKS 611
            GKSF  LRMRSA RF V CAAKPETV+KVC IVKKQLALP D+ VTGESKFA LGADSLDTVEIVMGL          ESAQ+I+TVQDAADLIEKLIE KS
Sbjct:   35 GKSFAPLRMRSA-RFVVCCAAKPETVEKVCAIVKKQLALPDDSAVTGESKFATLGADSLDTVEIVMGLEEEFGINVEEESAQSIATVQDAADLIEKLIEKKS 135          
BLAST of CN189453 vs. ExPASy Swiss-Prot
Match: ACP4_CUPLA (Acyl carrier protein 4, chloroplastic OS=Cuphea lanceolata GN=ACL1 PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.012e-28
Identity = 70/100 (70.00%), Postives = 75/100 (75.00%), Query Frame = -2
Query:  309 KSFPSLRMRSAPRFRVSCAAKPETVDKVCQIVKKQLALPADTTVTGESKFAALGADSLDTVEIVMGLXXXXXXXXXXESAQTISTVQDAADLIEKLIETK 608
            KSFPSLR       RVSC AKPETV KVC+IVKKQLALP D+ V G SKF+ALGADSLDTVEIVMGL          ESAQ+I TVQDAADLIEKL+E K
Sbjct:   38 KSFPSLRSSKGSFARVSCQAKPETVAKVCRIVKKQLALPDDSEVNGLSKFSALGADSLDTVEIVMGLEEEFGISVEEESAQSIQTVQDAADLIEKLMEKK 137          
BLAST of CN189453 vs. ExPASy Swiss-Prot
Match: ACP1_CUPLA (Acyl carrier protein 1, chloroplastic OS=Cuphea lanceolata GN=ACL1.1 PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 4.436e-27
Identity = 70/101 (69.31%), Postives = 77/101 (76.24%), Query Frame = -2
Query:  309 KSFPSLRM-RSAPRFRVSCAAKPETVDKVCQIVKKQLALPADTTVTGESKFAALGADSLDTVEIVMGLXXXXXXXXXXESAQTISTVQDAADLIEKLIETK 608
            KSFPSL+  +S+   RVSC AKPETV KVC IVKKQLALP D+ V G SKF+ALGADSLDTVEIVMGL          ESAQ+I TVQDAADLIEKL+E K
Sbjct:   38 KSFPSLKSSKSSFALRVSCQAKPETVAKVCGIVKKQLALPDDSEVNGLSKFSALGADSLDTVEIVMGLEEEFGISVEEESAQSIQTVQDAADLIEKLMEKK 138          
BLAST of CN189453 vs. ExPASy Swiss-Prot
Match: ACP3_CUPLA (Acyl carrier protein 3, chloroplastic OS=Cuphea lanceolata GN=ACL1.3 PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 9.882e-27
Identity = 68/102 (66.67%), Postives = 74/102 (72.55%), Query Frame = -2
Query:  309 GKSFPSLRMRSAP-RFRVSCAAKPETVDKVCQIVKKQLALPADTTVTGESKFAALGADSLDTVEIVMGLXXXXXXXXXXESAQTISTVQDAADLIEKLIETK 611
            GK FPSLR    P  FRV C AK ETV +VC+IVKKQLALP D+ V G SKF+ALGADSLDTVEIVMGL          ESAQ+I TVQDAADLIEKL+  K
Sbjct:   41 GKIFPSLRSSRGPLSFRVCCQAKQETVTRVCEIVKKQLALPEDSEVNGLSKFSALGADSLDTVEIVMGLEEEFGISVEEESAQSIQTVQDAADLIEKLVGNK 142          
BLAST of CN189453 vs. ExPASy Swiss-Prot
Match: ACP2_CUPLA (Acyl carrier protein 2, chloroplastic OS=Cuphea lanceolata GN=ACL1.2 PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.152e-25
Identity = 67/100 (67.00%), Postives = 74/100 (74.00%), Query Frame = -2
Query:  309 KSFPSLRMRSAPRFRVSCAAKPETVDKVCQIVKKQLALPADTTVTGESKFAALGADSLDTVEIVMGLXXXXXXXXXXESAQTISTVQDAADLIEKLIETK 608
            KSF S   R +   RV+C AKPETV KVC IVKKQLALP D+ V+G SKF+ALGADSLDTVEIVMGL          ESAQ+I TVQDAADLIEKL+E K
Sbjct:   38 KSFFS--RRGSFSLRVNCQAKPETVTKVCNIVKKQLALPDDSDVSGVSKFSALGADSLDTVEIVMGLEEEFGISVEEESAQSIQTVQDAADLIEKLMEKK 135          
BLAST of CN189453 vs. ExPASy Swiss-Prot
Match: ACP1_HORVU (Acyl carrier protein 1, chloroplastic OS=Hordeum vulgare GN=ACL1.1 PE=1 SV=2)

HSP 1 Score: 109.383 bits (272), Expect = 1.744e-23
Identity = 65/108 (60.19%), Postives = 75/108 (69.44%), Query Frame = -2
Query:  303 SFPSLRMR-SAPRFRVSCAA------KPETVDKVCQIVKKQLALPADTTVTGESKFAALGADSLDTVEIVMGLXXXXXXXXXXESAQTISTVQDAADLIEKLIETKSA 605
            SF S+  R S+ RF++ CAA      K ETVDKVC IVKKQLA+P  T VT ESKF+ LGADSLDTVEIVMGL           SAQ I+TVQDAA+LIEKL+  K+A
Sbjct:   42 SFVSISSRPSSLRFKICCAAMGEAQAKKETVDKVCMIVKKQLAVPDGTPVTAESKFSELGADSLDTVEIVMGLEEEFNITVDETSAQDIATVQDAANLIEKLVTEKTA 149          
BLAST of CN189453 vs. ExPASy Swiss-Prot
Match: ACP3_HORVU (Acyl carrier protein 3, chloroplastic OS=Hordeum vulgare GN=ACL1.3 PE=1 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 1.477e-22
Identity = 57/98 (58.16%), Postives = 71/98 (72.45%), Query Frame = -2
Query:  303 LRMRSAP-RFRVSCAAKPETVDKVCQIVKKQLALPADTTVTGESKFAALGADSLDTVEIVMGLXXXXXXXXXXESAQTISTVQDAADLIEKLIETKSA 593
            LR++  P RF V C+AK +TV+KVC+IVKKQLA+P  T V G +KF+ LGADSLDTVEIVMGL           SAQ I+TV+DAA LI+KL+  KS+
Sbjct:   35 LRLQPVPMRFAVCCSAKQDTVEKVCEIVKKQLAVPEGTEVCGTTKFSDLGADSLDTVEIVMGLEEEFQISVEETSAQAIATVEDAATLIDKLVSAKSS 132          
BLAST of CN189453 vs. ExPASy Swiss-Prot
Match: ACP2_HORVU (Acyl carrier protein 2, chloroplastic OS=Hordeum vulgare GN=ACL1.2 PE=1 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 5.611e-22
Identity = 58/94 (61.70%), Postives = 67/94 (71.28%), Query Frame = -2
Query:  318 SLRMRSAP-RFRVSCAAKPETVDKVCQIVKKQLALPADTTVTGESKFAALGADSLDTVEIVMGLXXXXXXXXXXESAQTISTVQDAADLIEKLI 596
            S R++  P RF V CAAK ETV+KVC IVK QLAL  DT V+G S FA LGADSLDTVEIVMGL           SAQTI+TV+DAA+LI+ L+
Sbjct:   34 SFRLQPVPQRFSVCCAAKKETVEKVCDIVKSQLALSDDTEVSGSSTFADLGADSLDTVEIVMGLEEAFGISVEESSAQTIATVEDAANLIDSLV 127          
BLAST of CN189453 vs. ExPASy Swiss-Prot
Match: ACP_BRACM (Acyl carrier protein SF2, chloroplastic OS=Brassica campestris GN=Acl1.1 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.132e-21
Identity = 56/96 (58.33%), Postives = 69/96 (71.88%), Query Frame = -2
Query:  309 SLRMRSAPRFRVSCAAKPETVDKVCQIVKKQLALPADTTVTGESKFAALGADSLDTVEIVMGLXXXXXXXXXXESAQTISTVQDAADLIEKLIETK 596
            +LR     RF +SCAAKPETV+KV +IVKKQL+L  D  V  E+KFA LGADSLDTVEIVMGL          E AQ I+TV++AA+LIE+L++ K
Sbjct:   38 NLRRSIPTRFSISCAAKPETVEKVSKIVKKQLSLKDDQKVVAETKFADLGADSLDTVEIVMGLEEEFDIEMAEEKAQKIATVEEAAELIEELVQLK 133          
BLAST of CN189453 vs. ExPASy Swiss-Prot
Match: ACP2_BRANA (Acyl carrier protein, chloroplastic OS=Brassica napus GN=ACL1.A2 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 6.204e-21
Identity = 56/96 (58.33%), Postives = 68/96 (70.83%), Query Frame = -2
Query:  309 SLRMRSAPRFRVSCAAKPETVDKVCQIVKKQLALPADTTVTGESKFAALGADSLDTVEIVMGLXXXXXXXXXXESAQTISTVQDAADLIEKLIETK 596
            +LR     R  VSCAAKPETV+KV +IVKKQL+L  D  V  E+KFA LGADSLDTVEIVMGL          E AQ I+TV++AA+LIE+L++ K
Sbjct:   38 NLRRSIPTRLSVSCAAKPETVEKVSKIVKKQLSLKDDQKVVAETKFADLGADSLDTVEIVMGLEEEFDIEMAEEKAQKIATVEEAAELIEELVQAK 133          
The following BLAST results are available for this feature:
BLAST of CN189453 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
ACP1_CASGL5.981e-3276.47Acyl carrier protein 1, chloroplastic OS=Casuarina... [more]
ACP4_CUPLA4.012e-2870.00Acyl carrier protein 4, chloroplastic OS=Cuphea la... [more]
ACP1_CUPLA4.436e-2769.31Acyl carrier protein 1, chloroplastic OS=Cuphea la... [more]
ACP3_CUPLA9.882e-2766.67Acyl carrier protein 3, chloroplastic OS=Cuphea la... [more]
ACP2_CUPLA4.152e-2567.00Acyl carrier protein 2, chloroplastic OS=Cuphea la... [more]
ACP1_HORVU1.744e-2360.19Acyl carrier protein 1, chloroplastic OS=Hordeum v... [more]
ACP3_HORVU1.477e-2258.16Acyl carrier protein 3, chloroplastic OS=Hordeum v... [more]
ACP2_HORVU5.611e-2261.70Acyl carrier protein 2, chloroplastic OS=Hordeum v... [more]
ACP_BRACM2.132e-2158.33Acyl carrier protein SF2, chloroplastic OS=Brassic... [more]
ACP2_BRANA6.204e-2158.33Acyl carrier protein, chloroplastic OS=Brassica na... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001O05_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001O05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189453 ID=CN189453; Name=CN189453; organism=Citrus sinensis; type=EST; length=666bp
TTTTTTTTTTTTTTAAATAATCTCTTGTTCAGTCATTATATATTGTTTTC
TCCTTTGATTGACTTATTGTGAAGCCGATAACAGGGTCCACAACCGAAAA
CTGGAACATGTTTATGATTGATTCCAAGCAAACTGATTAATTGAGTTCTC
TCTAATAGAAGGAACAACAGAATAGAAAAACCACTGACAAGTTCACAATA
CAAGCTAGAAACTCCTTGAGACAAGCCAACAAAAAGATCGAAAACGAAAC
TAGACGAACTAAGTCCCTAAGCCCCGGCTCTCTCTCCAGACCATTTTAAT
TAAGCACTCTTGGTCTCAATGAGCTTCTCAATCAGATCTGCAGCATCTTG
AACGGTTGAGATGGTCTGGGCACTTTCTTCTTCAACGCTGATCCCAAATT
CCTCCTCCAGTCCCATCACAATCTCAACCGTATCAAGAGAATCAGCTCCA
AGGGCAGCGAATTTTGACTCTCCGGTAACGGTAGTATCTGCTGGGAGTGC
CAACTGCTTCTTCACAATTTGACAAACCTTATCCACGGTCTCTGGCTTGG
CCGCACAGGAAACCCGGAAGCGGGGTGCTGATCGCATTCTAAGGGATGGG
AAGCTTTTCCCATTGATGGAAAGTGAAACTGAATTCACACTAGAGATCCT
ACCCTGGGTCTGCTTG
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