CN189452

Overview
NameCN189452
Unique NameCN189452
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length739
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2732 contig Csv1_Contig2732:1..739. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN189452 vs. ExPASy Swiss-Prot
Match: AMY3E_ORYSJ (Alpha-amylase isozyme 3E OS=Oryza sativa subsp. japonica GN=AMY1.4 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.054e-22
Identity = 52/105 (49.52%), Postives = 66/105 (62.86%), Query Frame = -1
Query:  422 WRFPGGREMQGYAYILTHPGTPSVFYDHIFS-HYRQEIEALLSVRKRNKIHCRSRVEIVKAERDVYAAIIDEKVAMKLGPGHYEPPSGSQNWCFVTEGRDYKVWE 733
            W FP  + MQGYAYILTHPG P +FYDH+F  + + EI  L  +R RN IH  S ++I+KAE D+Y A+ID KV  KLGP +        ++  V  G DY VWE
Sbjct:  320 WPFPSDKVMQGYAYILTHPGIPCIFYDHVFDWNLQHEIATLAEIRSRNGIHAESTLDILKAEGDIYVAMIDGKVITKLGPRYDAGGIIPSDFHVVAHGNDYCVWE 424          
BLAST of CN189452 vs. ExPASy Swiss-Prot
Match: AMY3D_ORYSJ (Alpha-amylase isozyme 3D OS=Oryza sativa subsp. japonica GN=AMY1.3 PE=2 SV=2)

HSP 1 Score: 105.531 bits (262), Expect = 3.066e-22
Identity = 49/105 (46.67%), Postives = 70/105 (66.67%), Query Frame = -1
Query:  422 WRFPGGREMQGYAYILTHPGTPSVFYDHIFS-HYRQEIEALLSVRKRNKIHCRSRVEIVKAERDVYAAIIDEKVAMKLGPGHYEPPSGSQNWCFVTEGRDYKVWE 733
            W FP  + MQGYAYILTHPG P +FYDH+F  + +QEI AL ++R+RN I+  S++ IV A+ D Y A++DEKV +K+G  +    +   ++     G+DY VWE
Sbjct:  320 WPFPSDKVMQGYAYILTHPGVPCIFYDHMFDWNLKQEITALAAIRERNGINAGSKLRIVVADADAYVAVVDEKVMVKIGTRYDVGNAVPSDFHQTVHGKDYSVWE 424          
BLAST of CN189452 vs. ExPASy Swiss-Prot
Match: AMY6_HORVU (Alpha-amylase type B isozyme OS=Hordeum vulgare GN=AMY1.6 PE=2 SV=2)

HSP 1 Score: 104.76 bits (260), Expect = 5.229e-22
Identity = 53/109 (48.62%), Postives = 70/109 (64.22%), Query Frame = -1
Query:  422 WRFPGGREMQGYAYILTHPGTPSVFYDHIFS-HYRQEIEALLSVRKRNKIHCRSRVEIVKAERDVYAAIIDEKVAMKLGP----GHYEPPSGSQNWCFVTEGRDYKVWE 733
            W FP  R MQGYAYILTHPG P +FYDH F    ++EI+ L+S+R R  IH  S+++I++A+ D+Y A I+ KV +KLGP    GH  P    + +  V  G DY VWE
Sbjct:  323 WPFPSDRVMQGYAYILTHPGNPCIFYDHFFDWGLKEEIDRLVSIRTRQGIHSESKLQIMEADADLYLAEIEGKVIVKLGPRYDVGHLIP----EGFKVVAHGNDYAVWE 427          
BLAST of CN189452 vs. ExPASy Swiss-Prot
Match: AMY2_HORVU (Alpha-amylase type B isozyme OS=Hordeum vulgare GN=AMY1.2 PE=1 SV=3)

HSP 1 Score: 104.76 bits (260), Expect = 5.229e-22
Identity = 52/105 (49.52%), Postives = 68/105 (64.76%), Query Frame = -1
Query:  422 WRFPGGREMQGYAYILTHPGTPSVFYDHIFS-HYRQEIEALLSVRKRNKIHCRSRVEIVKAERDVYAAIIDEKVAMKLGPGHYEPPSGSQNWCFVTEGRDYKVWE 733
            W FP  R MQGYAYILTHPGTP +FYDH F    ++EI+ L+SVR R+ IH  S+++I++A+ D+Y A ID KV +KLGP +         +     G DY VWE
Sbjct:  321 WPFPSDRVMQGYAYILTHPGTPCIFYDHFFDWGLKEEIDRLVSVRTRHGIHNESKLQIIEADADLYLAEIDGKVIVKLGPRYDVGNLIPGGFKVAAHGNDYAVWE 425          
BLAST of CN189452 vs. ExPASy Swiss-Prot
Match: AMY3B_ORYSJ (Alpha-amylase isozyme 3B OS=Oryza sativa subsp. japonica GN=AMY1.6 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 8.920e-22
Identity = 50/105 (47.62%), Postives = 69/105 (65.71%), Query Frame = -1
Query:  422 WRFPGGREMQGYAYILTHPGTPSVFYDHIFS-HYRQEIEALLSVRKRNKIHCRSRVEIVKAERDVYAAIIDEKVAMKLGPGHYEPPSGSQNWCFVTEGRDYKVWE 733
            W FP  + MQGYAYILTHPG P +FYDH+F  + +QEI  L +VR RN+IH  S+++I+ AE DVY A+ID+KV  K+G  +        ++  V  G +Y +WE
Sbjct:  321 WPFPSDKVMQGYAYILTHPGVPCIFYDHVFDWNLKQEISTLAAVRSRNEIHPGSKLKILAAEGDVYVAMIDDKVITKIGTRYDVGNLIPSDFHVVAHGNNYCIWE 425          
BLAST of CN189452 vs. ExPASy Swiss-Prot
Match: AMY3C_ORYSJ (Alpha-amylase isozyme 3C OS=Oryza sativa subsp. japonica GN=AMY1.7 PE=2 SV=2)

HSP 1 Score: 101.679 bits (252), Expect = 4.427e-21
Identity = 50/105 (47.62%), Postives = 67/105 (63.81%), Query Frame = -1
Query:  422 WRFPGGREMQGYAYILTHPGTPSVFYDHIFS-HYRQEIEALLSVRKRNKIHCRSRVEIVKAERDVYAAIIDEKVAMKLGPGHYEPPSGSQNWCFVTEGRDYKVWE 733
            W FP  + MQGYAYILTHPG P +FYDH+F  + +QEI  L +VR RN IH  S++ I+ A+ DVY A+ID+KV  K+G  +        ++  V  G +Y VWE
Sbjct:  321 WPFPSDKVMQGYAYILTHPGVPCIFYDHVFDWNLKQEISTLAAVRSRNGIHPGSKLNILAADGDVYVAMIDDKVITKIGTRYDVGNLIPSDFHVVAHGNNYCVWE 425          
BLAST of CN189452 vs. ExPASy Swiss-Prot
Match: AMYA_VIGMU (Alpha-amylase OS=Vigna mungo GN=AMY1.1 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.782e-21
Identity = 53/109 (48.62%), Postives = 70/109 (64.22%), Query Frame = -1
Query:  422 WRFPGGREMQGYAYILTHPGTPSVFYDHIFS-HYRQEIEALLSVRKRNKIHCRSRVEIVKAERDVYAAIIDEKVAMKLGP----GHYEPPSGSQNWCFVTEGRDYKVWE 733
            W FP  + MQGYAYILTHPGTPS+FYDH F    +++I  L S+R RN I+ +S V+I+ +E D+Y A ID K+ +K+GP    G+  P     N    T G+DY VWE
Sbjct:  317 WPFPSDKVMQGYAYILTHPGTPSIFYDHFFDWGLKEQIAKLSSIRLRNGINEKSTVKIMASEGDLYVAKIDNKIMVKIGPKMDLGNLIP----SNLHVATSGQDYAVWE 421          
BLAST of CN189452 vs. ExPASy Swiss-Prot
Match: AMY3A_ORYSJ (Alpha-amylase isozyme 3A OS=Oryza sativa subsp. japonica GN=AMY1.2 PE=2 SV=2)

HSP 1 Score: 101.293 bits (251), Expect = 5.782e-21
Identity = 50/109 (45.87%), Postives = 70/109 (64.22%), Query Frame = -1
Query:  422 WRFPGGREMQGYAYILTHPGTPSVFYDHIFS-HYRQEIEALLSVRKRNKIHCRSRVEIVKAERDVYAAIIDEKVAMKLGP----GHYEPPSGSQNWCFVTEGRDYKVWE 733
            W FP  + + GYAYILTHPG P +FYDH+F  + +QEI AL + RKRN I+  S++ ++ AE D+Y A++DE+V  K+GP    G+  P     ++  V  G DY VWE
Sbjct:  323 WPFPSDKVILGYAYILTHPGVPCIFYDHVFDWNLKQEINALAATRKRNGINAGSKLRVLAAESDMYVAMVDERVITKIGPRIDVGNIIP----SDFHIVAHGNDYCVWE 427          
BLAST of CN189452 vs. ExPASy Swiss-Prot
Match: AMY4_HORVU (Alpha-amylase type B isozyme (Fragment) OS=Hordeum vulgare GN=AMY1.4 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 7.551e-21
Identity = 54/109 (49.54%), Postives = 70/109 (64.22%), Query Frame = -1
Query:  422 WRFPGGREMQGYAYILTHPGTPSVFYDHIFS-HYRQEIEALLSVRKRNKIHCRSRVEIVKAERDVYAAIIDEKVAMKLGPGHYEP----PSGSQNWCFVTEGRDYKVWE 733
            W FP  R MQGYAYILTHP TP +FYDH F    ++EI+ L+SVR R+ IH  S+++I++A+ D+Y A ID KV +KLGP  Y+     P G +       G DY VWE
Sbjct:   47 WPFPSDRVMQGYAYILTHPRTPCIFYDHFFDWGPKEEIDRLVSVRTRHGIHNESKLQIIEADADLYLAEIDGKVIVKLGP-RYDVGNLIPGGFEG---AAHGNDYAVWE 151          
BLAST of CN189452 vs. ExPASy Swiss-Prot
Match: AMY3_WHEAT (Alpha-amylase AMY3 OS=Triticum aestivum GN=AMY1.1 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 6.392e-20
Identity = 54/109 (49.54%), Postives = 67/109 (61.47%), Query Frame = -1
Query:  422 WRFPGGREMQGYAYILTHPGTPSVFYDHIFS-HYRQEIEALLSVRKRNKIHCRSRVEIVKAERDVYAAIIDEKVAMKLGP----GHYEPPSGSQNWCFVTEGRDYKVWE 733
            W FP  + MQGYAYILTHPG P +FYDH+F    +QEI AL +VR RN IH  S ++I+KAE D+Y A I  KV  K+G     G    PSG +      +G +Y VWE
Sbjct:  304 WPFPSDKVMQGYAYILTHPGIPCIFYDHVFDWKLKQEITALATVRSRNGIHPGSTLDILKAEGDLYVAKIGGKVITKIGSRYNIGDNVIPSGFK---IAAKGNNYCVWE 409          
The following BLAST results are available for this feature:
BLAST of CN189452 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
AMY3E_ORYSJ1.054e-2249.52Alpha-amylase isozyme 3E OS=Oryza sativa subsp. ja... [more]
AMY3D_ORYSJ3.066e-2246.67Alpha-amylase isozyme 3D OS=Oryza sativa subsp. ja... [more]
AMY6_HORVU5.229e-2248.62Alpha-amylase type B isozyme OS=Hordeum vulgare GN... [more]
AMY2_HORVU5.229e-2249.52Alpha-amylase type B isozyme OS=Hordeum vulgare GN... [more]
AMY3B_ORYSJ8.920e-2247.62Alpha-amylase isozyme 3B OS=Oryza sativa subsp. ja... [more]
AMY3C_ORYSJ4.427e-2147.62Alpha-amylase isozyme 3C OS=Oryza sativa subsp. ja... [more]
AMYA_VIGMU5.782e-2148.62Alpha-amylase OS=Vigna mungo GN=AMY1.1 PE=2 SV=1[more]
AMY3A_ORYSJ5.782e-2145.87Alpha-amylase isozyme 3A OS=Oryza sativa subsp. ja... [more]
AMY4_HORVU7.551e-2149.54Alpha-amylase type B isozyme (Fragment) OS=Hordeum... [more]
AMY3_WHEAT6.392e-2049.54Alpha-amylase AMY3 OS=Triticum aestivum GN=AMY1.1 ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001O04_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001O04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189452 ID=CN189452; Name=CN189452; organism=Citrus sinensis; type=EST; length=739bp
GAGGAAATCATATATTTTTTACAAAGTTCTATAACAACAATGAAACGTAT
AATTCCACTCTGGGTGTTCTTTTAAATATAAACCAGCTTCCACCAGCTAG
TCGTAAAATCCAAGTACTGTAAATGACTTGTAAACAGGCTTGAGCACTAT
CTGTGGCTGCAGCAATACTCAATTTCCAAAGCTGCATTGCCCTTAATCAA
GTCGCTCTTAACCCTTCTATAAATGACATGTAAAATAATGTTGGTATATG
GTACACTAACTTCTATTTCAGGTTTGGAGCACACCACCTTCAAGGAAAAC
TAAACTATCCCCTTCTGGTATTCGCCAGATTGCTCTAGAAATACAAGCTA
CTTCACAGTGAATACTTATCTAATCAATTTTACGAGATTAACAATACTGC
TGTGATTATATATTAAGCTGCTTCCCAGACCTTGTAATCTCTCCCCTCCG
TTACAAAACACCAATTTTGGGACCCACTTGGAGGTTCATAATGACCTGGT
CCAAGCTTCATTGCAACTTTTTCATCGATGATGGCTGCATATACATCTCT
CTCTGCCTTCACAATTTCAACTCTACTACGGCAGTGGATTTTATTCCTTT
TTCTCACAGAGAGAAGAGCTTCAATCTCCTGTCGATAATGAGAAAAGATA
TGATCATAGAACACTGATGGTGTTCCTGGATGAGTTAGGATGTAAGCATA
TCCTTGCATTTCCCTTCCACCTGGAAATCTCCAATGACC
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