CN189448

Overview
NameCN189448
Unique NameCN189448
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length611
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10601 contig Csv1_Contig10601:490..1100. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN189448 vs. ExPASy Swiss-Prot
Match: MYB44_ARATH (Transcription factor MYB44 OS=Arabidopsis thaliana GN=MYB44 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 5.162e-16
Identity = 66/180 (36.67%), Postives = 89/180 (49.44%), Query Frame = -2
Query:  107 CNGYD-ADFGNSFQQQPLKLKRSVSAGSSVPVTTGLYMXXXXXXXXXXXXXXXXXXXSNYNIYKPVARSGGINVDVNVVPEP-ETTSSSNDPPTSLSLSLPGVD-----XXXXXXXXXXXSTQAVNAKASVPAPVSSDSGSKGLV--------GFSKEFMAVMQEMIKQEVRTYMAALEQ 601
            C GYD   +  S   +P+K  RSVSAGS  PV TGLYM                    +  ++KPV R G +     V+P P ET+SSS+DPPTSLSLSLPG D                +T + +   +  + +    G +G +        G   EFMAV+QEMIK EVR+YM  +++
Sbjct:  107 CGGYDHRGYDGSEDHRPVK--RSVSAGSP-PVVTGLYMSPGSPTGSDVSDSSTIPILPSVELFKPVPRPGAV-----VLPLPIETSSSSDDPPTSLSLSLPGADVSEESNRSHESTNINNTTSSRHNHNNTVSFMPFSGGFRGAIEEMGKSFPGNGGEFMAVVQEMIKAEVRSYMTEMQR 278          
The following BLAST results are available for this feature:
BLAST of CN189448 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
MYB44_ARATH5.162e-1636.67Transcription factor MYB44 OS=Arabidopsis thaliana... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS06_0001O02_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001O02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189448 ID=CN189448; Name=CN189448; organism=Citrus sinensis; type=EST; length=611bp
TTTTTTTTTTTTTTTTTACTCACTAACCAGTCCTTTGCATGGCAACATTC
CTTAAAACCCCATCACCGCCCCCACCACTACCGTTATAACACGCGCCACC
TCTCTGCTGCTCAAGCGCCGCCATGTACGTCCTCACTTCCTGCTTTATCA
TCTCCTGCATCACAGCCATAAACTCTTTACTAAACCCCACTAATCCCTTC
GACCCACTGTCACTACTTACTGGAGCCGGCACCGAAGCTTTTGCGTTCAC
TGCCTGAGTTGACTCACTCACTTTGTTTGAAACTTCTGAGGAGGAATCCA
CACCAGGAAGGGACAGACTCAATGAAGTAGGAGGGTCATTAGACGACGAC
GTCGTTTCCGGCTCGGGCACCACATTCACGTCCACATTGATACCGCCAGA
TCTCGCCACGGGTTTGTATATATTGTAATTCGATGACAAACCCGGCACGC
TTGAATCGCTGACGTCGGATCCCGATGGACTACCGGGGCTCATATAAAGT
CCCGTGGTCACGGGCACACTCGATCCCGCACTCACCGATCTTTTCAATTT
CAACGGCTGTTGCTGAAAACTATTCCCAAAATCCGCATCGTATCCATTAC
AATTCAAAAAA
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