CN189444

Overview
NameCN189444
Unique NameCN189444
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length686
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7399 contig Csv1_Contig7399:148..833. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN189444 vs. ExPASy Swiss-Prot
Match: TIF6B_ARATH (Protein TIFY 6B OS=Arabidopsis thaliana GN=TIFY6B PE=1 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.286e-24
Identity = 88/231 (38.10%), Postives = 124/231 (53.68%), Query Frame = 2
Query:    8 IVVKEEVNNDVRKEIGFSKGSAIQWPFSNKVSAVP-QFMSFKVAQEDKNKKILSDHLGSSG-FMPFS-AEAYEHNQRRGMAEVQKSFDLDRQGGTHISLTAYSVPHEVHSVHCSHDIKTFPVSNQ---AIPVSINNPVFKNQ-FATIGQNMGGANVKQQFLGGIPVTSPH-TVLPTIGSFGGVHESWNNIKTRGSP-QLTIFYAGTVNVFEDISPEKAQAIMLLAGNGSSI 673
            I VKEE +   R     +    + W FSNKVSA   QF+SF+  QED+++K  + HL  SG FMP S A+ Y+  ++   + VQ                                ++ FP SNQ      VS++ P F++  +A  G++    N   Q L G+P+ +P  ++LP  GS  G  +  ++ K  GSP QLTIFYAG+V V++DISPEKA+AIMLLAGNGSS+
Sbjct:   15 ITVKEETSESSRDS---APNRGMNWSFSNKVSASSSQFLSFRPTQEDRHRKSGNYHLPHSGSFMPSSVADVYDSTRKAPYSSVQ-------------------------------GVRMFPNSNQHEETNAVSMSMPGFQSHHYAPGGRSFMNNNNNSQPLVGVPIMAPPISILPPPGSIVGTTDIRSSSKPIGSPAQLTIFYAGSVCVYDDISPEKAKAIMLLAGNGSSM 211          
BLAST of CN189444 vs. ExPASy Swiss-Prot
Match: TIF6A_ARATH (Protein TIFY 6A OS=Arabidopsis thaliana GN=TIFY6A PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.183e-19
Identity = 75/231 (32.47%), Postives = 103/231 (44.59%), Query Frame = 2
Query:    8 IVVKEEVNNDVRKEIGFSKGSAIQWPFSNKVSAVPQFMSFKVAQEDKNKKILSDHLGSSGFMPFSAEAYEHNQRRGMAEVQKSFDLDRQGGTHISLTAYSVPHEVHSVHCSHDIKTFPVSNQ----AIPVSINNPVFKNQFATIGQNMGGANVKQQFLGGIPVTSPHTVLPTIGSFGGVHESWNNIKTRGSP---QLTIFYAGTVNVFEDISPEKAQAIMLLAGNGSSIAP 679
            I VKEE N D     G      + W FS+KV + PQF+SF  +Q++     ++DHL SS  M       + NQR   + +Q+                                + FP S+Q     I VS++ P + N F           +  Q LGG P+ +P            V  +   I++   P   QLTIFYAG+V V++DI+PEKAQAIMLLAGNG    P
Sbjct:   15 ITVKEETNEDSAPSRGM-----MDWSFSSKVGSGPQFLSFGTSQQETRVNTVNDHLLSSAAM-------DQNQRTYFSSLQED-------------------------------RVFPGSSQQDQTTITVSMSEPNYINSF-----------INHQHLGGSPIMAPPV---------SVFPAPTTIRSSSKPLPPQLTIFYAGSVLVYQDIAPEKAQAIMLLAGNGPHAKP 182          
The following BLAST results are available for this feature:
BLAST of CN189444 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
TIF6B_ARATH1.286e-2438.10Protein TIFY 6B OS=Arabidopsis thaliana GN=TIFY6B ... [more]
TIF6A_ARATH6.183e-1932.47Protein TIFY 6A OS=Arabidopsis thaliana GN=TIFY6A ... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS06_0001N23_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001N23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189444 ID=CN189444; Name=CN189444; organism=Citrus sinensis; type=EST; length=686bp
ATTTGTTATTGTGGTGAAGGAAGAGGTCAACAATGATGTTCGCAAAGAGA
TAGGATTTAGTAAAGGGTCGGCGATTCAGTGGCCCTTCTCCAACAAGGTC
AGTGCAGTTCCTCAATTCATGTCTTTTAAGGTTGCTCAAGAAGATAAGAA
TAAGAAGATTCTATCTGATCACCTGGGGTCCTCTGGATTTATGCCTTTCT
CTGCGGAAGCATATGAGCATAATCAAAGGCGTGGAATGGCCGAAGTTCAG
AAATCATTCGATCTCGATAGGCAAGGTGGGACTCATATTTCACTGACAGC
TTATTCTGTGCCACATGAAGTGCATTCTGTGCACTGTTCTCATGATATAA
AGACATTTCCAGTCTCCAACCAGGCAATTCCGGTTTCTATCAACAACCCT
GTCTTCAAGAATCAATTTGCTACCATAGGTCAGAACATGGGTGGTGCCAA
CGTGAAGCAACAGTTTCTTGGAGGAATTCCTGTTACATCTCCACATACAG
TTCTTCCCACCATTGGATCTTTTGGTGGGGTACATGAATCATGGAACAAT
ATCAAAACCCGTGGATCTCCTCAGTTGACCATCTTTTATGCCGGTACAGT
TAATGTCTTTGAAGATATCTCGCCTGAGAAGGCTCAGGCTATTATGCTAT
TAGCTGGTAATGGTTCCTCCATTGCTCCAACAATGG
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