CN189442

Overview
NameCN189442
Unique NameCN189442
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length736
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10524 contig Csv1_Contig10524:17..752. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN189442 vs. ExPASy Swiss-Prot
Match: HEMH_CUCSA (Ferrochelatase-2, chloroplastic OS=Cucumis sativus GN=HEMH PE=2 SV=1)

HSP 1 Score: 234.187 bits (596), Expect = 5.672e-61
Identity = 113/149 (75.84%), Postives = 128/149 (85.91%), Query Frame = -1
Query:  290 KDRGINNDHTLAYQSRVGPVKWLKPYTDEVLVELGQKGVKSLLAIPVSFVSEHIETLEEIDMEYKELALESGIENWGRVPALNCTPSFITDLADAVIEALPSALAMSAPKNISQEDDHNPVRYAIKMFFGSILAFVLFFSPRMINAFRN 736
            K RGI N+HTLAYQSRVGPV+WLKPYTDEVLVELGQKG+KSLLA+PVSFVSEHIETLEEIDMEYK LALESGI+NWGRVPALNC  SFI+DLADAVIEALPSA A++   + +  DDH+P  YAIK+ FGS+LAF+L  SP+    FRN
Sbjct:  339 KARGIGNEHTLAYQSRVGPVQWLKPYTDEVLVELGQKGIKSLLAVPVSFVSEHIETLEEIDMEYKHLALESGIQNWGRVPALNCNSSFISDLADAVIEALPSATALAPHTSSTDADDHDPFLYAIKLLFGSVLAFILLLSPKAFMVFRN 487          
BLAST of CN189442 vs. ExPASy Swiss-Prot
Match: HEMH1_ORYSJ (Ferrochelatase-1, chloroplastic OS=Oryza sativa subsp. japonica GN=Os09g0297000 PE=2 SV=1)

HSP 1 Score: 233.802 bits (595), Expect = 7.408e-61
Identity = 118/151 (78.15%), Postives = 129/151 (85.43%), Query Frame = -1
Query:  284 KDRGINNDHTLAYQSRVGPVKWLKPYTDEVLVELGQKGVKSLLAIPVSFVSEHIETLEEIDMEYKELALESGIENWGRVPALNCTPSFITDLADAVIEALPSALAMSAPKNISQEDDHNPVRYAIKMFFGSILAFVLFFSPRMINAFRNQL 736
            K RGI N HTLAYQSRVGPV+WLKPYTDEVLVELGQ+GVKSLLA+PVSFVSEHIETLEEIDMEYKELALESGIENWGRVPAL CT SFI+DLADAV+EALPSA A+   K    + D + + Y  KMFFGSILAFVL  SPR+I+AFRN L
Sbjct:  331 KSRGILNSHTLAYQSRVGPVQWLKPYTDEVLVELGQQGVKSLLAVPVSFVSEHIETLEEIDMEYKELALESGIENWGRVPALGCTSSFISDLADAVVEALPSASALVTKKVDESDSDMDLMHYLSKMFFGSILAFVLLLSPRLISAFRNTL 481          
BLAST of CN189442 vs. ExPASy Swiss-Prot
Match: HEMH_HORVU (Ferrochelatase-2, chloroplastic OS=Hordeum vulgare GN=HEMH PE=2 SV=1)

HSP 1 Score: 231.876 bits (590), Expect = 2.815e-60
Identity = 115/151 (76.16%), Postives = 128/151 (84.77%), Query Frame = -1
Query:  284 KDRGINNDHTLAYQSRVGPVKWLKPYTDEVLVELGQKGVKSLLAIPVSFVSEHIETLEEIDMEYKELALESGIENWGRVPALNCTPSFITDLADAVIEALPSALAMSAPKNISQEDDHNPVRYAIKMFFGSILAFVLFFSPRMINAFRNQL 736
            K RG  NDHTLAYQSRVGPV+WLKPYTDEVLVELGQKGVKSLLA+PVSFVSEHIETLEEIDMEY+ELALESGIENWGRVPAL CT SFI+DLADAV+EALPSA AM+  K    + D + + Y  KMF GS+LAF L  SPR+++AFRN L
Sbjct:  333 KSRGTLNDHTLAYQSRVGPVQWLKPYTDEVLVELGQKGVKSLLAVPVSFVSEHIETLEEIDMEYRELALESGIENWGRVPALGCTSSFISDLADAVVEALPSASAMATRKVKDTDSDMDMMHYLTKMFLGSVLAFFLLLSPRLVSAFRNTL 483          
BLAST of CN189442 vs. ExPASy Swiss-Prot
Match: HEMH1_ARATH (Ferrochelatase-1, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=HEM15 PE=2 SV=1)

HSP 1 Score: 227.254 bits (578), Expect = 6.933e-59
Identity = 114/152 (75.00%), Postives = 128/152 (84.21%), Query Frame = -1
Query:  290 KDRGINNDHTLAYQSRVGPVKWLKPYTDEVLVELGQKGVKSLLAIPVSFVSEHIETLEEIDMEYKELALESGIENWGRVPALNCTPSFITDLADAVIEALPSALAMSAPKNISQEDD---HNPVRYAIKMFFGSILAFVLFFSPRMINAFRN 736
            K RG+ NDH LAYQSRVGPV+WLKPYTDEVLV+LG+ GVKSLLA+PVSFVSEHIETLEEIDMEY+ELALESG+ENWGRVPAL  TPSFITDLADAVIE+LPSA AMS P  +   +D    +   Y +KMFFGSILAFVL  SP+M +AFRN
Sbjct:  314 KARGVLNDHKLAYQSRVGPVQWLKPYTDEVLVDLGKSGVKSLLAVPVSFVSEHIETLEEIDMEYRELALESGVENWGRVPALGLTPSFITDLADAVIESLPSAEAMSNPNAVVDSEDSESSDAFSYIVKMFFGSILAFVLLLSPKMFHAFRN 465          
BLAST of CN189442 vs. ExPASy Swiss-Prot
Match: HEMH_ORYSI (Ferrochelatase-2, chloroplastic OS=Oryza sativa subsp. indica GN=HEMH PE=2 SV=2)

HSP 1 Score: 176.022 bits (445), Expect = 1.833e-43
Identity = 84/105 (80.00%), Postives = 96/105 (91.43%), Query Frame = -1
Query:  416 RGINNDHTLAYQSRVGPVKWLKPYTDEVLVELGQKGVKSLLAIPVSFVSEHIETLEEIDMEYKELALESGIENWGRVPALNCTPSFITDLADAVIEALPSALAMS 730
            RGI N  TLAYQSRVGPV+WL+PYTDE ++ELGQKGVKSLLA+P+SFVSEHIETLEEID+EYKELALESGI++WGRVPAL C P+FITDLADAVIE+LP   AM+
Sbjct:  340 RGITNSCTLAYQSRVGPVEWLRPYTDETIIELGQKGVKSLLAVPISFVSEHIETLEEIDVEYKELALESGIKHWGRVPALGCEPTFITDLADAVIESLPYVGAMA 444          
BLAST of CN189442 vs. ExPASy Swiss-Prot
Match: HEMH2_ORYSJ (Ferrochelatase-2, chloroplastic OS=Oryza sativa subsp. japonica GN=Os05g0361200 PE=2 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 1.833e-43
Identity = 84/105 (80.00%), Postives = 96/105 (91.43%), Query Frame = -1
Query:  416 RGINNDHTLAYQSRVGPVKWLKPYTDEVLVELGQKGVKSLLAIPVSFVSEHIETLEEIDMEYKELALESGIENWGRVPALNCTPSFITDLADAVIEALPSALAMS 730
            RGI N  TLAYQSRVGPV+WL+PYTDE ++ELGQKGVKSLLA+P+SFVSEHIETLEEID+EYKELALESGI++WGRVPAL C P+FITDLADAVIE+LP   AM+
Sbjct:  340 RGITNSCTLAYQSRVGPVEWLRPYTDETIIELGQKGVKSLLAVPISFVSEHIETLEEIDVEYKELALESGIKHWGRVPALGCEPTFITDLADAVIESLPYVGAMA 444          
BLAST of CN189442 vs. ExPASy Swiss-Prot
Match: HEMH2_ARATH (Ferrochelatase-2, chloroplastic OS=Arabidopsis thaliana GN=At2g30390 PE=2 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 2.739e-39
Identity = 77/105 (73.33%), Postives = 93/105 (88.57%), Query Frame = -1
Query:  416 RGINNDHTLAYQSRVGPVKWLKPYTDEVLVELGQKGVKSLLAIPVSFVSEHIETLEEIDMEYKELALESGIENWGRVPALNCTPSFITDLADAVIEALPSALAMS 730
            R I N +TLAYQSRVGPV+WLKPYT+E + ELG+KGV++LLA+P+SFVSEHIETLEEID+EYKELAL+SGI+NWGRVPAL   P FI+DLADAV+E+LP   AM+
Sbjct:  327 RKITNAYTLAYQSRVGPVEWLKPYTEEAITELGKKGVENLLAVPISFVSEHIETLEEIDVEYKELALKSGIKNWGRVPALGTEPMFISDLADAVVESLPYVGAMA 431          
BLAST of CN189442 vs. ExPASy Swiss-Prot
Match: HEMH_TRIEI (Ferrochelatase OS=Trichodesmium erythraeum (strain IMS101) GN=hemH PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 5.532e-32
Identity = 67/100 (67.00%), Postives = 80/100 (80.00%), Query Frame = -1
Query:  437 KDRGINNDHTLAYQSRVGPVKWLKPYTDEVLVELGQKGVKSLLAIPVSFVSEHIETLEEIDMEYKELALESGIENWGRVPALNCTPSFITDLADAVIEAL 736
            K    +N HTLAYQSRVGPV+WLKPYT++ + EL   GVK LL +P+SFVSEHIETL+EID+EY+ELA E+GI N+ RVPALN  P FI DLAD V+EAL
Sbjct:  223 KTLNCSNPHTLAYQSRVGPVEWLKPYTEDAIEELAAGGVKDLLVVPISFVSEHIETLQEIDIEYRELAEEAGISNFYRVPALNTHPVFINDLADLVMEAL 322          
BLAST of CN189442 vs. ExPASy Swiss-Prot
Match: HEMH_SYNP2 (Ferrochelatase OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=hemH PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 4.683e-31
Identity = 64/97 (65.98%), Postives = 82/97 (84.54%), Query Frame = -1
Query:  437 GINNDHTLAYQSRVGPVKWLKPYTDEVLVELGQKGVKSLLAIPVSFVSEHIETLEEIDMEYKELALESGIENWGRVPALNCTPSFITDLADAVIEAL 727
            G  ND+TLAYQSRVGPV+WL+PYT++ L+ LG+KGVK L+ IP+SFVSEHIETL+EID+EY+E+A E+GIEN+ RVPALN  P FI  LA+ V ++L
Sbjct:  226 GRPNDYTLAYQSRVGPVEWLQPYTEDSLIALGEKGVKDLVVIPISFVSEHIETLQEIDIEYREVAEEAGIENFRRVPALNTHPLFIESLANLVTDSL 322          
BLAST of CN189442 vs. ExPASy Swiss-Prot
Match: HEMH_CYAP4 (Ferrochelatase OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=hemH PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 4.683e-31
Identity = 63/94 (67.02%), Postives = 78/94 (82.98%), Query Frame = -1
Query:  437 NDHTLAYQSRVGPVKWLKPYTDEVLVELGQKGVKSLLAIPVSFVSEHIETLEEIDMEYKELALESGIENWGRVPALNCTPSFITDLADAVIEAL 718
            N H LAYQSRVGPV+WLKPYT+EV+ EL  +GV  L+ +P+SF+SEHIETL+EIDMEY+ELA E+GIE++ RVPALN  P FI DL+  V+EAL
Sbjct:  229 NPHVLAYQSRVGPVEWLKPYTEEVIPELASQGVNELVVVPISFISEHIETLQEIDMEYRELAEEAGIEHFRRVPALNTHPLFIADLSQLVLEAL 322          
The following BLAST results are available for this feature:
BLAST of CN189442 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 207
Match NameE-valueIdentityDescription
HEMH_CUCSA5.672e-6175.84Ferrochelatase-2, chloroplastic OS=Cucumis sativus... [more]
HEMH1_ORYSJ7.408e-6178.15Ferrochelatase-1, chloroplastic OS=Oryza sativa su... [more]
HEMH_HORVU2.815e-6076.16Ferrochelatase-2, chloroplastic OS=Hordeum vulgare... [more]
HEMH1_ARATH6.933e-5975.00Ferrochelatase-1, chloroplastic/mitochondrial OS=A... [more]
HEMH_ORYSI1.833e-4380.00Ferrochelatase-2, chloroplastic OS=Oryza sativa su... [more]
HEMH2_ORYSJ1.833e-4380.00Ferrochelatase-2, chloroplastic OS=Oryza sativa su... [more]
HEMH2_ARATH2.739e-3973.33Ferrochelatase-2, chloroplastic OS=Arabidopsis tha... [more]
HEMH_TRIEI5.532e-3267.00Ferrochelatase OS=Trichodesmium erythraeum (strain... [more]
HEMH_SYNP24.683e-3165.98Ferrochelatase OS=Synechococcus sp. (strain ATCC 2... [more]
HEMH_CYAP44.683e-3167.02Ferrochelatase OS=Cyanothece sp. (strain PCC 7425 ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001N22_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001N22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189442 ID=CN189442; Name=CN189442; organism=Citrus sinensis; type=EST; length=736bp
TTTTTTTTTTTTTTTTTAGCCAATGAGCCAATGAAAACAAAATATATCAT
AAATACATTCCACAAAGATTTATATTTGATTATTTTTCAGTAACTGACGA
CCACAGCAACAAAAAGCCGCGGTATTCCCCAGTCATAAATATTCCCTCAT
TGTATCGCTAGTTTCCCGTATAAGAATAAAATAGAGAAAGACCAAAATTC
TTGAACGGTATCAGTATTTTTATCTCTCCTTGCTCAAGACGTAATATTAC
TCAAGTAAGCTTGCCTCTTAATCACCTTCAAAAGAGCTGATTCCTAAATG
CATTAATCATTCTTGGCGAGAAAAACAGAACAAATGCCAAGATCGAACCA
AAGAACATTTTGATGGCATATCTCACAGGGTTATGGTCATCCTCTTGAGA
GATATTCTTAGGGGCAGACATGGCTAATGCCGAAGGTAGAGCTTCTATTA
CTGCATCTGCCAAATCTGTGATGAAGGAAGGGGTGCAATTCAGAGCAGGT
ACACGTCCCCAATTTTCAATGCCGGATTCAAGAGCCAATTCCTTGTACTC
CATGTCAATCTCTTCAAGAGTTTCAATGTGCTCGCTCACAAAACTGACTG
GAATGGCTAGAAGACTCTTGACACCTTTCTGGCCAAGCTCCACAAGAACT
TCATCAGTGTAAGGCTTCAGCCATTTTACAGGCCCAACTCGACTCTGGTA
TGCCAAAGTATGATCATTGTTGATTCCTCTATCTTT
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